Genetic mapping and comparative expression analysis of transcription factors in cotton

Publication Overview
TitleGenetic mapping and comparative expression analysis of transcription factors in cotton
AuthorsChen X, Jin X, Li X, Lin Z
TypeJournal Article
Journal NamePloS one
Volume10
Issue5
Year2015
Page(s)e0126150
CitationChen X, Jin X, Li X, Lin Z. Genetic mapping and comparative expression analysis of transcription factors in cotton. PloS one. 2015; 10(5):e0126150.

Abstract

Transcription factors (TFs) play an important role in the regulation of plant growth and development. The study of the structure and function of TFs represents a research frontier in plant molecular biology. The findings of these studies will provide significant information regarding genetic improvement traits in crops. Currently, a large number of TFs have been cloned, and their function has been verified. However, relatively few studies that genetically map TFs in cotton are available. To genetically map TFs in cotton in this study, specific primers were designed for TF genes that were published in the Plant Transcription Factor Database. A total of 977 TF primers were obtained, and 31 TF polymorphic loci were mapped on 15 cotton chromosomes. These polymorphic loci were clearly preferentially distributed on chromosomes 5, 11, 19 and 20; and TFs from the same family mapped to homologous cotton chromosomes. In-silico mapping verified that many mapped TFs were mapped on their corresponding chromosomes or their homologous chromosomes' corresponding chromosomes in the diploid genomes. QTL mapping for fiber quality revealed that TF-Ghi005602-2 mapped on Chr19 was associated with fiber length. Eighty-five TF genes were selected for RT-PCR analysis, and 4 TFs were selected for qRT-PCR analysis, revealing unique expression patterns across different stages of fiber development between the mapping parents. Our data offer an overview of the chromosomal distribution of TFs in cotton, and the comparative expression analysis between Gossypium hirsutum and G. barbadense provides a rough understanding of the regulation of TFs during cotton fiber development.

Features
This publication contains information about 978 features:
Feature NameUniquenameType
TF-Ghi004828TF-Ghi004828genetic_marker
TF-Ghi004843TF-Ghi004843genetic_marker
TF-Ghi004846TF-Ghi004846genetic_marker
TF-Ghi004847TF-Ghi004847genetic_marker
TF-Ghi004863TF-Ghi004863genetic_marker
TF-Ghi004871TF-Ghi004871genetic_marker
TF-Ghi004897TF-Ghi004897genetic_marker
TF-Ghi004904TF-Ghi004904genetic_marker
TF-Ghi004909TF-Ghi004909genetic_marker
TF-Ghi004924TF-Ghi004924genetic_marker
TF-Ghi004963TF-Ghi004963genetic_marker
TF-Ghi004965TF-Ghi004965genetic_marker
TF-Ghi004977TF-Ghi004977genetic_marker
TF-Ghi004978TF-Ghi004978genetic_marker
TF-Ghi005005TF-Ghi005005genetic_marker
TF-Ghi005016TF-Ghi005016genetic_marker
TF-Ghi005071TF-Ghi005071genetic_marker
TF-Ghi005135TF-Ghi005135genetic_marker
TF-Ghi005144TF-Ghi005144genetic_marker
TF-Ghi005145TF-Ghi005145genetic_marker
TF-Ghi005187TF-Ghi005187genetic_marker
TF-Ghi005204TF-Ghi005204genetic_marker
TF-Ghi005234-1TF-Ghi005234-1genetic_marker
TF-Ghi005234-2TF-Ghi005234-2genetic_marker
TF-Ghi005272TF-Ghi005272genetic_marker

Pages

Projects
This publication contains information about 1 projects:
Project NameDescription
E3-BC1-2015
Featuremaps
This publication contains information about 1 maps:
Map Name
Emian-22 x 3-79, BC1 (2015)
Properties
Additional details for this publication include:
Property NameValue
Publication ModelElectronic-eCollection
ISSN1932-6203
eISSN1932-6203
Publication Date2015
Journal AbbreviationPLoS ONE
DOI10.1371/journal.pone.0126150
Elocation10.1371/journal.pone.0126150
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States