Cotton Cluster File Request

Name: 
BhanuPrakash Amindala
Email Address: 
bhanuprakash.a@nuziveeduseeds.com
Email Address: 
bhanuprakash.a@nuziveeduseeds.com
Organization: 
Nuziveedu Seeds Limited
Acknowledgement: 
0
Acknowledgement4: 
0

164 QTLs of 27 (18 new) traits from publications available (6/20)

164 QTLs (122 morphological traits and 42 fiber quality or yield traits) added and searchable at CottonGen. Go to www.cottongen.org/find/qtl, select 'QTL' then 'Search' to view all available QTLs. Or search QTLs by any combination of species, trait category, trait name, published symbol or label.

5 tetraploids (Chen et al, 2020) CottonGen anno-tool available (6/20)

The 5 Gossypium species genomes G. hirsutum, G. barbadense, G. tomentosum, G. mustelinum, and G. darwinii (AD1-AD5, Chen et al, 2020) CottonGen annotations and tools available

WHU genomes CottonGen annotation and tools available (5/20)

The Wuhan University (WHU) genomes G. herbaceum, G. arboreum, and G. hirsutum (A1, A2, and AD1. Huang et al., 2020) CottonGen annotation and tools available.

G. hirsutum TM1 UTX v2.1 Genome (26 chrom. and 999 scaffolds)

Human-Readable NameG. hirsutum TM1 UTX v2.1 Genome (26 chrom. and 999 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_UTX_v2.1_genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for Gh_TM1_UTX_v2_a1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum TM1 UTX v2.1 CDs (107,216)

Human-Readable Name-- G. hirsutum TM1 UTX v2.1 CDs (107,216)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_UTX_v2.1.transcripts.fas
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

-- G. hirsutum TM1 UTX v2.1 proteins (107,216)

Human-Readable Name-- G. hirsutum TM1 UTX v2.1 proteins (107,216)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_UTX_v2.1.pep.faa
Database Typeprotein
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink

G. hirsutum TM-1 WHU v1 Genome (26 chrom. and 316 scaffolds)

Human-Readable NameG. hirsutum TM-1 WHU v1 Genome (26 chrom. and 316 scaffolds)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_TM-1_WHU_v1_genome.fasta
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseJBrowse for Gh_TM1_WHU_v1_a1
RegEx/^(\S+).*/
Link-out Typejbrowse

-- G. hirsutum TM-1 WHU v1 CDs (74,350)

Human-Readable Name-- G. hirsutum TM-1 WHU v1 CDs (74,350)
Database Path/mainlab/web/temp/db/cottongen/G.hirsutum_TM-1_WHU_v1.transcripts.fas
Database Typenucleotide
FASTA Header Formatdefault
External DatabaseCottonGen Database
RegEx/^(\S+).*/
Link-out Typelink