CGR6896

Marker Overview
NameCGR6896
Genbank IDGQ394326
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1291
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6896_F: GCGCAGGTAAGGACTCCC
Primer 2CGR6896_R: GCATCAAGAGCAGAAACAGTG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394326
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr19N/AAD_chr.19110CGR6896View
2CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr19N/ADt.0572.6CGR6896View
3CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr19N/AAD_chr.1983.8CGR6896View
4CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr19N/ADt.05111.5CGR6896-111.496View
Contact
NameDetails
Monsanto
Country:United States
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
CGR6896_FCGR6896_FGossypium hirsutumprimer
CGR6896_RCGR6896_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CGR6896CGR6896Gossypium hirsutummarker_locus
CGR6896CGR6896-111.496Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1291MONCS1291Gossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr09chromosomeCGR6896:2..400 .
Chr09:26199311..26199907 +
Germplasm
Stock NameType
Deltapine 33 BTBD
Sequence
>CGR6896 ID=CGR6896|Name=CGR6896|organism=Gossypium hirsutum|type=genetic_marker|length=300bp
GCGCAGGTAAGGACTCCCCTCGACTTTTCCCCTTTCTTTATCTTATATAT
GTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCTTTAAAAAACAAAA
AAAAAATTAATAAATAAATTCGGATACCGAATGAAAAAAAGAAAATAAGA
ACCTTTTTTCAAAGATTTTTCATTTTTATTGATTCAACGATGTTTTTTTT
GTATTCTCCATCAAAATCCCCCTATTACATCGTTTTTCTGGGCTTTTTAA
AGCCGAAATATCAATTTTTTATATTTTTTCACTGTTTCTGCTCTTGATGC