BNL3994

Marker Overview
NameBNL3994
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3994_orig
Source Typegenomic
Repeat Motif(CT)25, (GA)25
PCR ConditionAnnealing temperature: 55
Primer 1BNL3994_F: TTGAGGGCATCCAAATCCAT
Primer 2BNL3994_R: CCTCCACCATACACGTGCTA
PolymorphismP_ BNL3994
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c22N/AAD_chr.2253.05BNL3994View
2Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c04N/AAD_chr.0462.47BNL3994View
3Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr04N/AAD_chr.0446.5BNL3994View
4AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr04N/AAD_chr.04103BNL3994View
5TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c22N/AAD_chr.2225.24BNL3994View
6Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg24/chr04N/AAD_chr.0427.7BNL3994View
7Zhongmiansuo-12 x 8891, RIL (2007)Zhongmiansuo-12 x 8891, RIL (2007).Z8-RIL_ch26/D12-1N/AAD_chr.260BNL3994View
8Acala-44 x Pima S-7, F2 (2004)Acala-44 x Pima S-7, F2 (2004).AP-F2_lg20/chr20N/AAD_chr.2066BNL3994View
9Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr04N/AAD_chr.0487.2BNL3994View
10AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr22N/AAD_chr.2280BNL3994View
11AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr26N/AAD_chr.26214BNL3994View
12DH962 x Jinmian-6, F2 (2009)DJ-F2_chr04N/AAD_chr.0465.1BNL3994View
13DH962 x Jinmian-6, F2 (2009)DJ-F2_chr04/LG13N/AAD_chr.0465.1BNL3994View
14HS427-10 x TM-1, F2:3 (2005)HT-F2:3_chr26-1N/AAD_chr.260BNL3994View
15PD6992 x SM3, F2:3 (2005)PDSM-F2:3_chr26N/AAD_chr.260BNL3994View
16Yumian-1 x 7235, RIL (2015)Y7-RIL_chr04N/AAD_chr.0415BNL3994View
17DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr04N/AAD_chr.0422.91BNL3994View
18TM-1 x 3-79, RIL (2014)T3-RIL.14_chr22N/AAD_chr.2256.4BNL3994View
19TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr22N/AAD_chr.2231.9BNL3994View
20DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr04N/AAD_chr.0421.7BNL3994View
21CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr22N/AAD_chr.2245.8BNL3994View
22Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr04N/AAD_chr.04104.6BNL3994bView
23Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr22N/AAD_chr.22177.6BNL3994bView
24Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr22N/AAD_chr.2250BNL3994bView
25Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr22N/AAD_chr.2279.2BNL3994aView
26Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr04N/AAD_chr.0490BNL3994aView
27(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr04-2N/AAD_chr.040BNL3994aView
28HS-46 x MARCABUCAG8US-1-88, RIL (2009)HS-46 x MARCABUCAG8US-1-88, RIL (2009).HSM-RIL_chr04N/AAD_chr.041BNL3994-95View
29Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr22N/AAD_chr.2242.6BNL3994-175View
30TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr26N/AAD_chr.26109.9BNL3994-175View
31TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr26/D12N/AAD_chr.26108.21BNL3994-175View
32CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr22N/ADt.0471.69BNL3994-71.686View
33TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.22N/AAD_chr.2256.39BNL3994-56.387View
34PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr04N/AAt.0496.5BNL3994-96.5View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL3994_FBNL3994_FGossypium hirsutumprimer
BNL3994_RBNL3994_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3994BNL3994Gossypium hirsutummarker_locus
BNL3994bBNL3994bGossypium hirsutummarker_locus
BNL3994aBNL3994aGossypium hirsutummarker_locus
BNL3994-95BNL3994-95Gossypium hirsutummarker_locus
BNL3994-175BNL3994-175Gossypium hirsutummarker_locus
BNL3994BNL3994-71.686Gossypium hirsutummarker_locus
BNL3994BNL3994-56.387Gossypium hirsutummarker_locus
BNL3994BNL3994-96.5Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3994_origBNL3994_origGossypium hirsutumsequence_feature


Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL3994 ID=BNL3994|Name=BNL3994|organism=Gossypium hirsutum|type=genetic_marker|length=126bp
TTGAGGGCATCCAAATCCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGTTGACAGAGAAAGTAGGGATAATTTCCTT
TGACATTAGCACGTGTATGGTGGAGG