BNL3661

Marker Overview
NameBNL3661
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3661_orig
Source Typegenomic
Repeat Motif(CT)17
PCR ConditionAnnealing temperature: 55
Primer 1BNL3661_F: AGGACAGCGATGTGTTGTTG
Primer 2BNL3661_R: ATGGAATGAATAAAATAAGAACAACG
PolymorphismP_ BNL3661
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr22N/AAD_chr.22202.9BNL3661View
2Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr14N/AAD_chr.14130BNL3661View
3Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg6/chr02N/AAD_chr.0236.6BNL3661View
4AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr02N/AAD_chr.02165BNL3661View
5Yumian-1 x T586, RIL (2015)YT-RIL.15_chr14N/AAD_chr.1411.5BNL3661View
6GX1135 x GX100-2, F2 (2013)GG-F2_chr14-2N/AAD_chr.148.7BNL3661View
7GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr14N/AAD_chr.1421.2BNL3661View
8GX1135 x VGX100-2, RIL (2016)GVG-RIL_chr14-3N/AAD_chr.140BNL3661View
9CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr14N/ADt.0220.5BNL3661View
10CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr02N/AAD_chr.0289.8BNL3661aView
11CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr14N/AAD_chr.1455.3BNL3661bView
12CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr14N/ADt.0225.78BNL3661b-25.777View
13CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr02N/AAt.0220.17BNL3661a-20.166View
14PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr02-1N/AAt.0253.6BNL3661b-53.6View
15PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr02-1N/AAt.0254.8BNL3661a-54.8View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL3661_FBNL3661_FGossypium hirsutumprimer
BNL3661_RBNL3661_RGossypium hirsutumprimer


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
seed indexqSI.CY-RIL.17_ch02.kl14Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3661BNL3661Gossypium hirsutummarker_locus
BNL3661aBNL3661aGossypium hirsutummarker_locus
BNL3661bBNL3661bGossypium hirsutummarker_locus
BNL3661bBNL3661b-25.777Gossypium hirsutummarker_locus
BNL3661aBNL3661a-20.166Gossypium hirsutummarker_locus
BNL3661bBNL3661b-53.6Gossypium hirsutummarker_locus
BNL3661aBNL3661a-54.8Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3661_origBNL3661_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr05chromosomeBNL3661:1..477 .
Chr05:3196184..3196648 +
Chr5chromosomeBNL3661:1..477 .
Chr5:2031080..2031544 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL3661 ID=BNL3661|Name=BNL3661|organism=Gossypium hirsutum|type=genetic_marker|length=197bp
AGGACAGCGATGTGTTGTTGTTTCTTTGTCATTGTCGTTGTCTTTGTCTT
TGTCTGTCTTTCACTTTCTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTTCCATTTTCTTATTTATACTAAATAAATACATTTTTAAATTCATC
TAAAATTTAAAATAAAAAATTCGTTGTTCTTATTTTATTCATTCCAT