BNL3649

Marker Overview
NameBNL3649
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3649_orig
Source Typegenomic
Repeat Motif(TC)20
PCR ConditionAnnealing temperature: 55
Primer 1BNL3649_F: GCAAAAACGAGTTGACCCAT
Primer 2BNL3649_R: CCTGGTTTTCAAGCCTGTTC
PolymorphismP_ BNL3649
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part.SSZ8-4WC_D11-1N/AAD_chr.2110.8BNL3649View
27235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D11-1N/AAD_chr.210BNL3649View
3CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_D02N/AAD_chr.2173.5BNL3649View
4Guazuncho-2 x VH8-4602, BC2 (2005)Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr21/lgD02N/AAD_chr.2151.6BNL3649View
5Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c11N/AAD_chr.1163.07BNL3649View
6Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c21N/AAD_chr.2164.09BNL3649View
7Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr21N/AAD_chr.21110BNL3649View
8AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr11N/AAD_chr.1176BNL3649View
9Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg2N/AAD_unknown161.9BNL3649View
10AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr21N/AAD_chr.2170BNL3649View
11(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr21-2N/AAD_chr.2116BNL3649View
12DH962 x Jinmian-6, F2 (2009)DJ-F2_chr21N/AAD_chr.2127.6BNL3649View
13DH962 x Jinmian-6, F2 (2009)DJ-F2_chr21/LG9N/AAD_chr.2127.6BNL3649View
14NemX x SJ-2, RIL (2005)NS-RIL_chr11/lgA03N/AAD_chr.11118.9BNL3649View
157235 x TM-1, F2:3 (2005)7T-F2:3_chr21/LGD02N/AAD_chr.218.5BNL3649View
16HS427-10 x TM-1, F2:3 (2005)HT-F2:3_chr21/LGD02N/AAD_chr.2113.2BNL3649View
17Yumian-1 x 7235, RIL (2015)Y7-RIL_chr21N/AAD_chr.2137.9BNL3649View
18DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr21-2N/AAD_chr.2188.47BNL3649View
19TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr21N/AAD_chr.21119.6BNL3649View
200-153 x sGK9708, RIL (2016)0s-RIL_chr21-2N/AAD_chr.2170.6BNL3649View
21DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr21-3N/AAD_chr.21-37.3BNL3649View
22CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr21N/ADt.113.2BNL3649View
23CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr21N/AAD_chr.2187.5BNL3649View
240-153 x sGK9708, RIL (2017)0s-RIL.17_chr21N/AAD_chr.2171.24BNL3649View
25Deltapine-61 x Texas-701, F2 (2007)Deltapine-61 x Texas-701, F2 (2007).DT-F2_chr.21N/AAD_chr.210BNL3649-180View
26TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr21N/AAD_chr.2171.7BNL3649-180View
27TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr21/D11N/AAD_chr.2163.39BNL3649-180View
28Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgD02N/AAD_chr.21120.8BNL3649-180View
29Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr11/lgA03N/AAD_chr.1177.2BNL3649bView
30Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr21/lgD02N/AAD_chr.2192.6BNL3649aView
31HS-46 x MARCABUCAG8US-1-88, RIL (2009)HS-46 x MARCABUCAG8US-1-88, RIL (2009).HSM-RIL_chr12N/AAD_chr.1256BNL3649-190View
32Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgD02N/AAD_chr.2162BNL3649-195View
33GB713 x Nem-X, F2 (2011)GN-F2_chr21N/AAD_chr.21153.4BNL3649_176View
34CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr21N/ADt.11104.11BNL3649-104.106View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL3649_FBNL3649_FGossypium hirsutumprimer
BNL3649_RBNL3649_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber elongationqFEL.0s-RIL_ch21-2.ay09Gossypium hirsutumQTL
fiber lengthqUHML.0s-RIL_ch21-2.ay10.2Gossypium hirsutumQTL
fiber strengthqFS.0s-RIL_ch21-2.ay09.2Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3649BNL3649Gossypium hirsutummarker_locus
BNL3649-180BNL3649-180Gossypium hirsutummarker_locus
BNL3649bBNL3649bGossypium hirsutummarker_locus
BNL3649aBNL3649aGossypium hirsutummarker_locus
BNL3649-190BNL3649-190Gossypium hirsutummarker_locus
BNL3649-195BNL3649-195Gossypium hirsutummarker_locus
BNL3649_176BNL3649_176Gossypium hirsutummarker_locus
BNL3649BNL3649-104.106Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3649_origBNL3649_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr07chromosomeBNL3649:1..570 .
Chr07:48640875..48641416 +
scaffold193supercontigBNL3649:1..570 .
scaffold193:689788..690329 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL3649 ID=BNL3649|Name=BNL3649|organism=Gossypium hirsutum|type=genetic_marker|length=195bp
GCAAAAACGAGTTGACCCATTGTAGAGATCCAAAACACAGGCCACTAGCC
AGAGTAGAGAGAGAAACCAAAAACAGAGCAAAAGAAAAAGAAAAACGCCT
GCATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATGG
TGAGTAAAACAGAGGAGACCCAATTGAACAGGCTTGAAAACCAGG