BNL2449

Marker Overview
NameBNL2449
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2449_orig
Source Typegenomic
Repeat Motif(GA)16, (TC)16
PCR ConditionAnnealing temperature: 55
Primer 1BNL2449_F: ATCTTTCAAACAACGGCAGC
Primer 2BNL2449_R: CGATTCCGGACTCTTGATGT
PolymorphismP_ BNL2449
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_A01N/AAD_chr.1382.8BNL2449View
2Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr13N/AAD_chr.13119.53BNL2449View
3Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c10N/AAD_chr.1042.14BNL2449View
4Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c13N/AAD_chr.1390.17BNL2449View
5Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr13N/AAD_chr.1390BNL2449View
6TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c13N/AAD_chr.1368.57BNL2449View
7Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg22/chr13N/AAD_chr.1327.1BNL2449View
8Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_A01N/AAD_chr.1330.4BNL2449View
9Yumian-1 x T586, F2:7 (2008)Yumian-1 x T586, RIL (2008).YT-RIL_chr13N/AAD_chr.1320BNL2449View
10Acala-44 x Pima S-7, F2 (2004)Acala-44 x Pima S-7, F2 (2004).AP-F2_lg40N/AAD_unknown4.8BNL2449View
11AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr10N/AAD_chr.1056BNL2449View
12AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr13N/AAD_chr.13188BNL2449View
13Yumian-1 x T586, RIL (2006)YT-RIL_chr13-2N/AAD_chr.1338.2BNL2449View
14Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr01N/AAD_chr.0130.4BNL2449View
15Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr13N/AAD_chr.1330.4BNL2449View
16PD6992 x SM3, F2:3 (2005)PDSM-F2:3_chr13/LGA01N/AAD_chr.130BNL2449View
17Yumian-1 x T586, RIL (2015)YT-RIL.15_chr13N/AAD_chr.1353.1BNL2449View
18Yumian-1 x 7235, RIL (2015)Y7-RIL_chr13N/AAD_chr.1345.8BNL2449View
19TM-1 x 3-79, RIL (2014)T3-RIL.14_chr13N/AAD_chr.1365.3BNL2449View
20TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr13N/AAD_chr.1356.3BNL2449View
21W10 x TM-1, F2:3 (2015)WT-F2:3_chr13N/AAD_chr.1318.1BNL2449View
22GX1135 x GX100-2, F2 (2013)GG-F2_chr13N/AAD_chr.13102.6BNL2449View
23GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr13N/AAD_chr.1357.8BNL2449View
24Emian-22 x 3-79, BC1 (2015)E3-BC1-2015_chr13N/AAD_chr.1380.9BNL2449View
25Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr13/lgA01N/AAD_chr.13147BNL2449aView
26H18 x TM-1, F2 (2005)H18TM1-F2_chr13N/AAD_chr.1375.6BNL2449aView
270-153 x sGK9708, RIL (2016)0s-RIL_chr13N/AAD_chr.1333.8BNL2449aView
28Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr10N/AAD_chr.1060.4BNL2449bView
29H18 x TM-1, F2 (2005)H18TM1-F2_chr13N/AAD_chr.1377.9BNL2449bView
300-153 x sGK9708, RIL (2016)0s-RIL_chr13N/AAD_chr.1331.4BNL2449bView
31TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr13/A13N/AAD_chr.1361.05BNL2449-140View
32Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgA01N/AAD_chr.1333.2BNL2449-140View
33TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr13N/AAD_chr.1360.8BNL2449-140View
34Yumian-1 x T586, RIL (2009)YT-RIL_chr13-2N/AAD_chr.1325BNL2449/170t(C13)View
35TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.13N/AAD_chr.1365.26BNL2449-65.256View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL2449_FBNL2449_FGossypium hirsutumprimer
BNL2449_RBNL2449_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber uniformityqFU.0s-RIL_ch13.ay10Gossypium hirsutumQTL
fiber uniformityqFU.0s-RIL_ch13.gy10Gossypium hirsutumQTL


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber strengthqFS.TTT-CSIL_ch13.p2-nj13.1Gossypium hirsutumQTL
fiber strengthqFS.TTT-CSIL_ch13.p2-nj14.1Gossypium hirsutumQTL
fiber strengthqFS.TTT-CSIL_ch13.p2-sy15.1Gossypium hirsutumQTL
lint percentqLP.TTT-CSIL_ch13.p2-df14.2Gossypium hirsutumQTL
lint percentqLP.TTT-CSIL_ch13.p2-nj14.3Gossypium hirsutumQTL
lint percentqLP.TTT-CSIL_ch13.p2-sy15Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2449BNL2449Gossypium hirsutummarker_locus
BNL2449aBNL2449aGossypium hirsutummarker_locus
BNL2449bBNL2449bGossypium hirsutummarker_locus
BNL2449-140BNL2449-140Gossypium hirsutummarker_locus
BNL2449/170t(C13)BNL2449/170t(C13)Gossypium hirsutummarker_locus
BNL2449BNL2449-65.256Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2449_origBNL2449_origGossypium hirsutumsequence_feature


Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL2449 ID=BNL2449|Name=BNL2449|organism=Gossypium hirsutum|type=genetic_marker|length=145bp
ATCTTTCAAACAACGGCAGCGCATGGAGATATTAGATGAACCATAAGTGC
GACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAATAACTA
TGTACCCTCACACTTGATTAATCAAACATCAAGAGTCCGGAATCG