BNL1694

Marker Overview
NameBNL1694
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1694_orig
Source Typegenomic
Repeat Motif(AG)19, (TC)19
PCR ConditionAnnealing temperature: 55
Primer 1BNL1694_F: CGTTTGTTTTCGTGTAACAGG
Primer 2BNL1694_R: TGGTGGATTCACATCCAAAG
PolymorphismP_ BNL1694
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr07N/AAD_chr.0716BNL1694bView
2Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr16N/AAD_chr.1677.5BNL1694bView
3Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr07N/AAD_chr.0750BNL1694bView
4TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c07N/AAD_chr.0785.88BNL1694bView
5TM-1 x 3-79, RIL (2014)T3-RIL.14_chr07N/AAD_chr.0752.3BNL1694bView
6SG 747 x Giza 75, BIL (2013)SG-BIL_chr16N/AAD_chr.1670.8BNL1694bView
7CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr07N/AAD_chr.0794.7BNL1694aView
8Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr07N/AAD_chr.0786.8BNL1694aView
9Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr16N/AAD_chr.16130BNL1694aView
10TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c16N/AAD_chr.1678.22BNL1694aView
11TM-1 x 3-79, RIL (2014)T3-RIL.14_chr16N/AAD_chr.1646.2BNL1694aView
12SG 747 x Giza 75, BIL (2013)SG-BIL_chr07N/AAD_chr.0755.4BNL1694aView
13Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c07N/AAD_chr.0736.37BNL1694View
14Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr16N/AAD_chr.1658.1BNL1694View
15AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr16N/AAD_chr.16105BNL1694View
16AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr07N/AAD_chr.07107BNL1694View
17Yumian-1 x T586, RIL (2006)YT-RIL_chr07-2N/AAD_chr.0740.2BNL1694View
18PD6992 x SM3, F2:3 (2005)PDSM-F2:3_chr07-2N/AAD_chr.070BNL1694View
19Yumian-1 x T586, RIL (2015)YT-RIL.15_chr07N/AAD_chr.07106.8BNL1694View
20DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr07-3N/AAD_chr.073.32BNL1694View
21TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr07N/AAD_chr.0723BNL1694View
220-153 x sGK9708, RIL (2016)0s-RIL_chr07-2N/AAD_chr.0713.6BNL1694View
23DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr07-1N/AAD_chr.07-115.3BNL1694View
24CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr07N/AAt.0769.6BNL1694View
25CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr16N/ADt.0776.1BNL1694View
26CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr07N/AAD_chr.0733.7BNL1694View
270-153 x sGK9708, RIL (2017)0s-RIL.17_chr16N/AAD_chr.16154.44BNL1694View
28Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr07N/AAD_chr.070BNL1694c*View
29Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr07N/AAD_chr.0712.1BNL1694dView
30Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr16N/AAD_chr.1651.4BNL1694a*View
31HS-46 x MARCABUCAG8US-1-88, RIL (2009)HS-46 x MARCABUCAG8US-1-88, RIL (2009).HSM-RIL_chr07N/AAD_chr.070BNL1694-236View
32TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr07N/AAD_chr.0768.4BNL1694-260View
33TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr07/A7N/AAD_chr.0768.64BNL1694-260View
34TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr16N/AAD_chr.1680.2BNL1694-235View
35TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr16/D1N/AAD_chr.1675.36BNL1694-235View
36Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr16N/AAD_chr.1686.1BNL1694-235View
37H16 x T586, F2 (2009)H16T586-F2_chr16N/AAD_chr.1680.4BNL1694-235View
38Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr16N/AAD_chr.160BNL1694-221View
39Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr16N/AAD_chr.16117.3BNL1694-232View
40Yumian-1 x T586, RIL (2009)YT-RIL_chr07-1N/AAD_chr.0793.3BNL1694/230y(C7,C16)View
41CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr07N/AAt.0764.72BNL1694-64.72View
42TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.07N/AAD_chr.0752.32BNL1694b-52.323View
43TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.16N/AAD_chr.1646.25BNL1694a-46.247View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL1694_FBNL1694_FGossypium hirsutumprimer
BNL1694_RBNL1694_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
lint percentqLP.SG-BIL_ch07.ay08Gossypium hirsutum x barbadenseQTL
lint percentqLP.SG-BIL_ch16.ay08.2Gossypium hirsutum x barbadenseQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1694bBNL1694bGossypium hirsutummarker_locus
BNL1694aBNL1694aGossypium hirsutummarker_locus
BNL1694BNL1694Gossypium hirsutummarker_locus
BNL1694c*BNL1694c*Gossypium hirsutummarker_locus
BNL1694dBNL1694dGossypium hirsutummarker_locus
BNL1694a*BNL1694a*Gossypium hirsutummarker_locus
BNL1694-236BNL1694-236Gossypium hirsutummarker_locus
BNL1694-260BNL1694-260Gossypium hirsutummarker_locus
BNL1694-235BNL1694-235Gossypium hirsutummarker_locus
BNL1694-221BNL1694-221Gossypium hirsutummarker_locus
BNL1694-232BNL1694-232Gossypium hirsutummarker_locus
BNL1694/230y(C7,C16)BNL1694/230y(C7,C16)Gossypium hirsutummarker_locus
BNL1694BNL1694-64.72Gossypium hirsutummarker_locus
BNL1694bBNL1694b-52.323Gossypium hirsutummarker_locus
BNL1694aBNL1694a-46.247Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1694_origBNL1694_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr01chromosomeBNL1694:1..318 .
Chr01:27263136..27263431 +
Chr1chromosomeBNL1694:1..318 .
Chr1:11354286..11354581 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL1694 ID=BNL1694|Name=BNL1694|organism=Gossypium hirsutum|type=genetic_marker|length=250bp
CGTTTGTTTTCGTGTAACAGGAGATAATGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAAATATTGGGAAACGAAACACGGATTTTATTACAT
TACTCACACTGTCACAAACATACATACATACATACATATTATGCATATAT
AGAAGTCCATATACATGCAGTATATTTATCTTGCCAACTTTGTTAGTGAT
ATAACTCCAAATCAAGTACTAATAATTTTTCTTTGGATGTGAATCCACCA