BNL1551

Marker Overview
NameBNL1551
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1551_orig
Source Typegenomic
Repeat Motif(AG)22
PCR ConditionAnnealing temperature: 55
Primer 1BNL1551_F: CGCAAGCCACCTGTAAAAC
Primer 2BNL1551_R: TCGAATTTTCTCTCTCTCTCTCTCT
PolymorphismP_ BNL1551
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_D02N/AAD_chr.2177.1BNL1551View
2Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c21N/AAD_chr.2164.94BNL1551View
3Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch21/lgD02N/AAD_chr.2148.73BNL1551View
4Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr16N/AAD_chr.1636.1BNL1551View
5Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr21N/AAD_chr.21110BNL1551View
6Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr16N/AAD_chr.1652.8BNL1551View
7Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg2N/AAD_unknown164.6BNL1551View
8Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_chr05.1N/AAD_chr.0551.5BNL1551View
9AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr16N/AAD_chr.16149BNL1551View
10AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr21N/AAD_chr.2170BNL1551View
11TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c21N/AAD_chr.21110.54BNL1551View
12Yumian-1 x T586, F2:7 (2008)Yumian-1 x T586, RIL (2008).YT-RIL_chr21N/AAD_chr.2136.1BNL1551View
13Yumian-1 x T586, RIL (2006)YT-RIL_chr21-3N/AAD_chr.2131.2BNL1551View
14(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr21-2N/AAD_chr.2118.8BNL1551View
15Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr05-1N/AAD_chr.0551.5BNL1551View
16DH962 x Jinmian-6, F2 (2009)DJ-F2_chr21N/AAD_chr.2159.5BNL1551View
17DH962 x Jinmian-6, F2 (2009)DJ-F2_chr21/LG9N/AAD_chr.2159.5BNL1551View
18Yumian-1 x T586, RIL (2015)YT-RIL.15_chr21N/AAD_chr.21139.7BNL1551View
19Yumian-1 x 7235, RIL (2015)Y7-RIL_chr21N/AAD_chr.2140.4BNL1551View
20DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr21-2N/AAD_chr.21103.44BNL1551View
21TM-1 x 3-79, RIL (2014)T3-RIL.14_chr21N/AAD_chr.21116.8BNL1551View
22DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr21-3N/AAD_chr.21-35.8BNL1551View
23CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr21N/ADt.115.7BNL1551View
24SG 747 x Giza 75, BIL (2013)SG-BIL_chr21N/AAD_chr.217.8BNL1551View
25CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr21N/AAD_chr.2189.8BNL1551View
26Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr21/lgD02N/AAD_chr.2192.6BNL1551aView
27TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr21N/AAD_chr.2171.7BNL1551-190View
28TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr21/D11N/AAD_chr.2163.39BNL1551-190View
29Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgD02N/AAD_chr.2159.1BNL1551-190View
30Yumian-1 x T586, RIL (2009)YT-RIL_chr21N/AAD_chr.2135.1BNL1551/180t(C21)View
31GB713 x Nem-X, F2 (2011)GN-F2_chr21N/AAD_chr.21154.2BNL1551_162View
32CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr21N/ADt.11106.14BNL1551-106.139View
33TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.21N/AAD_chr.21116.84BNL1551-116.844View
34PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr21N/ADt.1152.8BNL1551-52.8View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL1551_FBNL1551_FGossypium hirsutumprimer
BNL1551_RBNL1551_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1551BNL1551Gossypium hirsutummarker_locus
BNL1551aBNL1551aGossypium hirsutummarker_locus
BNL1551-190BNL1551-190Gossypium hirsutummarker_locus
BNL1551/180t(C21)BNL1551/180t(C21)Gossypium hirsutummarker_locus
BNL1551_162BNL1551_162Gossypium hirsutummarker_locus
BNL1551BNL1551-106.139Gossypium hirsutummarker_locus
BNL1551BNL1551-116.844Gossypium hirsutummarker_locus
BNL1551BNL1551-52.8Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1551_origBNL1551_origGossypium hirsutumsequence_feature


Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL1551 ID=BNL1551|Name=BNL1551|organism=Gossypium hirsutum|type=genetic_marker|length=184bp
CGCAAGCCACCTGTAAAACGTCGGTACTCCCATGGCTGTGCTGTGAAGAA
TTGGAGGTTCCTCCGGTAAGGTTTTGGAGGGTGAGGTTTTTTTTTTCCGA
TATAGGGAAAATATCGGAAAAAGAAAGAAAAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAAAATTCGA