BNL1395

Marker Overview
NameBNL1395
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1395_orig
Source Typegenomic
Repeat Motif(AT)11+(AG)10
PCR ConditionAnnealing temperature: 55
Primer 1BNL1395_F: AAGCAGCCAAGAAATACCGA
Primer 2BNL1395_R: TCGATAACGGCTACAGTAATCT
PolymorphismP_ BNL1395
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_chr16N/AAD_chr.1617.6BNL1395View
27235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D07-1N/AAD_chr.1634.7BNL1395View
3Hai-7124 x Junmian-1, BC1 (2008) partHai-7124 x Junmian-1, BC1 (2008) part.HJ-BC1_chr07N/AAD_chr.07171.2BNL1395View
4AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr16N/AAD_chr.16146BNL1395View
5AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr07N/AAD_chr.0757BNL1395View
6Yumian-1 x T586, RIL (2006)YT-RIL_chr16-2N/AAD_chr.1645BNL1395View
7(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr16-2N/AAD_chr.1674.8BNL1395View
87235 x TM-1, F2:3 (2005)7T-F2:3_chr16N/AAD_chr.166.7BNL1395View
9HS427-10 x TM-1, F2:3 (2005)HT-F2:3_chr16N/AAD_chr.1611.7BNL1395View
10Yumian-1 x T586, RIL (2015)YT-RIL.15_chr16N/AAD_chr.1673.9BNL1395View
11CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr16N/ADt.0725.6BNL1395View
12CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr16N/AAD_chr.16159.1BNL1395View
13Deltapine-61 x Texas-701, F2 (2007)Deltapine-61 x Texas-701, F2 (2007).DT-F2_chr.16.1N/AAD_chr.161.7BNL1395-165View
14TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr16N/AAD_chr.1678.8BNL1395-165View
15TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr16/D1N/AAD_chr.1678.65BNL1395-165View
16Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr16N/AAD_chr.16140.5BNL1395-165View
17H16 x T586, F2 (2009)H16T586-F2_chr16N/AAD_chr.1678.3BNL1395-165View
18HS-46 x MARCABUCAG8US-1-88, RIL (2009)HS-46 x MARCABUCAG8US-1-88, RIL (2009).HSM-RIL_chr16N/AAD_chr.168BNL1395-151View
19Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr07N/AAD_chr.0730BNL1395cView
20TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c07N/AAD_chr.0791.65BNL1395cView
21TM-1 x 3-79, RIL (2014)T3-RIL.14_chr07N/AAD_chr.0746.7BNL1395cView
22Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr16N/AAD_chr.16110BNL1395bView
23TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c16N/AAD_chr.1680.88BNL1395bView
24TM-1 x 3-79, RIL (2014)T3-RIL.14_chr16N/AAD_chr.1643.1BNL1395bView
25Yumian-1 x T586, RIL (2009)YT-RIL_chr16-2N/AAD_chr.1613.7BNL1395/160t(C16)View
26Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr16N/AAD_chr.1617.6BNL1395(C16)View
27CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr16N/ADt.07104.88BNL1395-104.876View
28TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.07N/AAD_chr.0746.72BNL1395c-46.72View
29TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.16N/AAD_chr.1643.13BNL1395b-43.133View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL1395_FBNL1395_FGossypium hirsutumprimer
BNL1395_RBNL1395_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1395BNL1395Gossypium hirsutummarker_locus
BNL1395-165BNL1395-165Gossypium hirsutummarker_locus
BNL1395-151BNL1395-151Gossypium hirsutummarker_locus
BNL1395cBNL1395cGossypium hirsutummarker_locus
BNL1395bBNL1395bGossypium hirsutummarker_locus
BNL1395/160t(C16)BNL1395/160t(C16)Gossypium hirsutummarker_locus
BNL1395(C16)BNL1395(C16)Gossypium hirsutummarker_locus
BNL1395BNL1395-104.876Gossypium hirsutummarker_locus
BNL1395cBNL1395c-46.72Gossypium hirsutummarker_locus
BNL1395bBNL1395b-43.133Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1395_origBNL1395_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr01chromosomeBNL1395:1..414 .
Chr01:29668797..29669238 +
scaffold89supercontigBNL1395:1..414 .
scaffold89:114846..115366 +
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL1395 ID=BNL1395|Name=BNL1395|organism=Gossypium hirsutum|type=genetic_marker|length=156bp
AAGCAGCCAAGAAATACCGATCATCAACAACAACGAGAACAGGAACAGTA
ACAACTTCGCGCCGTGTCAATGAAGCAGTAAAAAGACAGATCAGATATAT
ATATATATATATATATAGAGAGAGAGAGAGAGAGAGATTACTGTAGCCGT
TATCGA