BNL1231

Marker Overview
NameBNL1231
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1231_orig
Source Typegenomic
Repeat Motif(AG)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL1231_F: TAATAAAAGGGAAAGGAAAGAGTT
Primer 2BNL1231_R: TATGGCTCTAGAATATTCCCTCG
PolymorphismP_ BNL1231
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1MGG-293-793, MAGIC (2018)MAGIC-19831_chr11N/AAD_chr.11200.8BNL1231-200.8View
2(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part.SSZ8-4WC_A11-3N/AAD_chr.1117.3BNL1231View
37235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D06-1N/AAD_chr.2511.2BNL1231View
4Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr11N/AAD_chr.1130.46BNL1231View
5Guazuncho-2 x VH8-4602, BC2 (2005)Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr21/lgD02N/AAD_chr.2110.1BNL1231View
6Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c21N/AAD_chr.2128.95BNL1231View
7AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr11N/AAD_chr.1112BNL1231View
8AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr25N/AAD_chr.253BNL1231View
9TM-1 x 3-79, RIL (2006)TM-1 x 3-79, RIL (2006).T3-RIL_chr.11bN/AAD_chr.1133BNL1231View
10Zhongmiansuo-12 x 8891, RIL (2007)Zhongmiansuo-12 x 8891, RIL (2007).Z8-RIL_ch11/A11N/AAD_chr.1125.2BNL1231View
11AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr21N/AAD_chr.2125BNL1231View
12DH962 x Jinmian-6, F2 (2009)DJ-F2_chr11N/AAD_chr.1156.2BNL1231View
13DH962 x Jinmian-6, F2 (2009)DJ-F2_chr11/LG12N/AAD_chr.1156.2BNL1231View
14NemX x SJ-2, RIL (2005)NS-RIL_chr11/lgA03N/AAD_chr.1121BNL1231View
15DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr11N/AAD_chr.1127.92BNL1231View
16TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr03N/AAD_chr.0348.9BNL1231View
17Emian-22 x 3-79, BC1 (2015)E3-BC1-2015_chr11N/AAD_chr.11200.8BNL1231View
18DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr11-1N/AAD_chr.11-145.3BNL1231View
19Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr21/lgD02N/AAD_chr.2131.3BNL1231aView
20Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr21N/AAD_chr.21150BNL1231aView
21Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr11/lgA03N/AAD_chr.1113.1BNL1231aView
22TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c21N/AAD_chr.21113.36BNL1231aView
23TM-1 x 3-79, RIL (2014)T3-RIL.14_chr21N/AAD_chr.21124.1BNL1231aView
24Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr08/lgA02N/AAD_chr.08132.8BNL1231a*View
25Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr11/lgA03N/AAD_chr.11162.8BNL1231cView
26Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr11/lgA03N/AAD_chr.11315.1BNL1231bView
27Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr11N/AAD_chr.11170BNL1231bView
28Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr21/lgD02N/AAD_chr.2110.6BNL1231bView
29TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c11N/AAD_chr.11140.86BNL1231bView
30TM-1 x 3-79, RIL (2014)T3-RIL.14_chr11N/AAD_chr.11144BNL1231bView
31TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr11N/AAD_chr.110BNL1231-185View
32TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr11/A11N/AAD_chr.110BNL1231-185View
33Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgA03.1N/AAD_chr.112.9BNL1231-185View
34ST-474 x Auburn 634 RNR, F2 (2007)STA-F2_chr11/lgA03N/AAD_chr.11107.5BNL-1231View
35TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.11N/AAD_chr.11143.99BNL1231b-143.985View
36TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.21N/AAD_chr.21124.06BNL1231a-124.06View
Image
Images
Gel image of 288 germplasm panel sceened by SSR BNL1231. Sample List: 1. Deltapine 14A, 2. Deltapine 14, 3. Short Deltapine 14, 4. Shi Duan 10, 5. Fox (CN-ZM-06131), 6. Huadong-7, 7. Ningmian-18, 8. Ningmian-21, 9. Ningmian-23, 10. Peng Hun 1, 11. Jiangsu Mian 2, 12. 57-681, 13. Dongting 3, 14. Nantong 5, 15. Ya Peng Mian, 16. Yuncheng 4, 17. Zhengzhou 385, 18. Dongting 1, 19. Yangma Big Boll, 20. Siyang-437, 21. Simian-2, 22. Su Mian 9, 23. Smooth leaf Deltapine, 24. Deltapine 16, 25. Xuzhou 538, 26. Half and Half, 27. Zhong Mian Suo 2, 28. Zhong Mian Suo 4, 29. Shan Mian 4, 30. Stonveille 4 (CN-ZM-06254), 31. Shan Mian 5, 32. China 86-1 (CN-ZM-01746), 33. Stoneville 4b (CN-ZM-06256), 34. Liao Mian 3, 35. Stoneville 2b (CN-ZM-06250), 36. Xuzhou 209, 37. 72-74, 38. Xuzhou 287, 39. Xuzhou 1818, 40. Xuzhou 142, 41. Xuzhou 142 no lint, 42. Zhong 521, 43. Zhong Mian Suo 5, 44. Zhong Mian Suo 6, 45. Uganda 4, 46. Zhong Mian Suo 7, 47. Zhong Mian Suo 12, 48. E Kang Mian 10, 49. E Mian 21, 50. Han 109, 51. Han 284, 52. Jin (Shanxi) Mian 25, 53. Lu Mian Yan 16, 54. Yu 668, 55. Yu Mian 11, 56. Yu Mian 17, 57. Yu Mian 21, 58. Zhong Mian Suo 35, 59. Zhong Mian Suo 40, 60. Jin Cou Zhong 12, 61. Zhong 12-73-12 early mature, 62. Zhong 12-73-13, 63. Zhong 12-901, 64. Zhong 12 (high-density-selection), 65. Coker 100 (CN-ZM-06166), 66. Delfos 531, 67. CN-ZM-03650, 68. Foster 6, 69. Gan Mian 1, 70. Shan Mian 3, 71. King 1, 72. Chao Yang Mian 1, 73. Guannong-1, 74. Jin Mian 2, 75. Jin Mian 1, 76. Hei Shan Mian 1, 77. Zhong Mian Suo 10, 78. KK-1543, 79. Lambright GL-5, 80. McNair 210, 81. Trice (CN-ZM-06234), 82. Yi Shu Hong, 83. P3-3594, 84. 65-3049-6, 85. 108F, 86. Bao Mian 2, 87. E Mian 9, 88. Shan Nong 3, 89. Han 74-209, 90. Han 81-272, 91. Handan 333, 92. Hong Ye Mian 2, 93. Hong Ye Mian 3, 94. Ji (Hebei) 182, 95. TM-1, 96. 3-79, 97. Lu (Shandong) Mian 12, 98. Lu Wu 401, 99. Yu Mian 17, 100. Macheng 96-1, 101. Shenmian-5, 102. Shen Mian 718 (71), 103. Shen Mian 9, 104. Shen Mian 8, 105. Xin Lu 101, 106. Xin Lu 102, 107. Zhong 1276, 108. Zhong 206, 109. Zhong Mian Suo 13, 110. Zhong 383 Glandless, 111. Zhong Mian Suo 19, 112. Zhong Mian Suo 8, 113. Ji Mian 20, 114. Ji (Hebei) A-1-7 (line33), 115. Ji (Hebei) A-7-8 (line33), 116. Chuan 109, 117. Chuan 109-1, 118. QB-1, 119. long fibre 2, 120. Ke Yuan 1, 121. Ke Yuan 4, 122. Qinli-514, 123. Shan 3619, 124. Shi Yuan 345, 125. Zhong 5881, 126. Zhong Mian Suo 23, 127. Zhong Mian Suo 9, 128. Zhong Yuan 9113, 129. E E80-11, 130. E E913, 131. E(Hubei) T 458, 132. E(Hubei) I 578, 133. CNH-67, 134. HL-07, 135. Qinyuan 91406-4, 136. Ya Huang 9101, 137. Ya Huang 9102, 138. Ya Huang 9103, 139. Zhong Yuan 9111, 140. Zhong Yuan 9112, 141. Zhong Yuan 9117, 142. Zhong Yuan 9118, 143. Zhong Yuan 9119, 144. Zhong Yuan HAS-1, 145. Zhong Yuan HST-1, 146. Zhong Yuan HST-2, 147. Zhong Yuan 9116, 148. Zhong Yuan 9115, 149. SA-1406, 150. Tashkent I, 151. Tashkent-6, 152. Zhong Yuan 9114, 153. Zhong Yuan HM-1, 154. Zhong 12, 155. Zhong 375, 156. Suyuan-3290, 157. Suyuan-7036, 158. Suyuan-7158, 159. Suyuan-7235, 160. Suyuan-7252, 161. Jin Mian 21, 162. Lang Huang F10-W99 (white lint), 163. Lang Huang F8 (brown lint), 164. Lang Mian 4, 165. Zong 1-61, 166. Zong 1-62, 167. RT White lint, 168. CN-ZM-114572, 169. Jin (Shanxi) Mian 27, 170. Ji (Hebei) Yuan 12-13, 171. Shi Yuan 638, 172. Zhong Yi B-25, 173. Zhong Yi Hong 2, 174. F(PDLINE), 175. PD 2165, 176. PD 3249, 177. AC 239, 178. AC 241, 179. Han 8957, 180. PD 109, 181. PD 113, 182. SC-1, 183. PD 6142, 184. PD 6179, 185. PD 6186, 186. PD 9223, 187. PD 9364, 188. Acala SJ-1, 189. Acala SJ-2, 190. Acala SJ-4, 191. Acala SJC-1, 192. Delcot 277-5, 193. Ji (Hebei) Yuan 23-24, 194. Ji (Hebei) Yuan 55, 195. Ji Zi 123, 196. Ji-668, 197. Jin (Shanxi) Yuan 1081, 198. Qinyuan-93089, 199. Hong Ye Mian 1, 200. Ji Mian 24 (Shi Yuan 321), 201. ISA205B396, 202. ISABC-2, 203. TX-1324, 204. TX-1326, 205. TX-1327, 206. Zhong Yuan HP-1, 207. E E901, 208. E E911, 209. Zhong Mian Suo 3, 210. Changde Small Leaf, 211. An Mian 1, 212. Xin Mian 291, 213. Liu Zhuang 1, 214. Baiquan 260, 215. Baiquan 460, 216. Baiquan 481, 217. Xiang Yang 415, 218. Xiang Yang 434, 219. Wan Mian 3, 220. Shangqiu-11, 221. Ji Han 2, 222. Ji Han 3, 223. Yan 70-14, 224. Shijiazhuang 353, 225. Ji Mian 8, 226. Lu Mian 1, 227. Lu Mian 2, 228. Liao 159, 229. He Mian 3, 230. Rendong 67-69, 231. Rendong 67-86, 232. Chang Za 1, 233. Chang Za 2, 234. Chang Za 4, 235. Yi Ke 30, 236. Yi Ke 32, 237. Hai Huang Mian, 238. Dai Hong Dai, 239. Xiang Xuan 2, 240. Zhi Mian 1, 241. Hua Mian 4, 242. Hua Mian 5, 243. Hong Shi 3, 244. E Mian 6, 245. Tian Mian 1, 246. Xiao Mian 1, 247. Xiaoxian 107, 248. Xiaoxian 171, 249. Huai Mian 3, 250. Jiangsu Mian 1, 251. Jiangsu Mian 3, 252. Ningmian-12, 253. Xuzhou 58, 254. Hu Mian 204, 255. Shanghai-1, 256. Bao Mian 13, 257. Bao Mian 18, 258. Simian-1, 259. Xin Mian 4, 260. Zhe Mian 1, 261. Ci Mian 1, 262. Bao Mian 1, 263. Gui Mian 1, 264. Gui Mian 2, 265. Autumn Deltapine, 266. Changdezaoshuxi, 267. Yun An 3, 268. Ji Han 5, 269. Xuzhou 287, 270. Pengze-1, 271. Shan-401, 272. Wu Ji Yi Zhi Hua, 273. Lishan Big Boll, 274. Xiang 4108, 275. Liao Mian 3, 276. Liao Mian 4, 277. Jin 444, 278. Jin Mian 6, 279. Jin Zhong 200, 280. Ba 11-29, 281. Chuan Jian 3, 282. Ya Peng Mian, 283. Liao (Liaoning) 7 Dominate-gland, 284. Liao (Liaoning) 7 Dominate-glandless, 285. Zhong 12 Dominate gland, 286. Zhong 12 Dominate glandless, 287. Zhong 17 (Dominate-glandless), 288. Zhong 17 Recessive glandless.
Relationships

This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
micronaireqMIC.MAGIC-19831_ch11.zk15Gossypium spp.QTL
fiber elongationqFEL.MAGIC-19831_ch11.jz15Gossypium spp.QTL
fiber elongationqFEL.MAGIC-19831_ch11.hg13Gossypium spp.QTL


This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL1231_FBNL1231_FGossypium hirsutumprimer
BNL1231_RBNL1231_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
lint indexqLI.HP-ch8Gossypium spp.QTL
lint yieldqLY.HP-ch8.1Gossypium spp.QTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1231BNL1231-200.8Gossypium hirsutummarker_locus
BNL1231BNL1231Gossypium hirsutummarker_locus
BNL1231aBNL1231aGossypium hirsutummarker_locus
BNL1231a*BNL1231a*Gossypium hirsutummarker_locus
BNL1231cBNL1231cGossypium hirsutummarker_locus
BNL1231bBNL1231bGossypium hirsutummarker_locus
BNL1231-185BNL1231-185Gossypium hirsutummarker_locus
BNL-1231BNL-1231Gossypium hirsutummarker_locus
BNL1231bBNL1231b-143.985Gossypium hirsutummarker_locus
BNL1231aBNL1231a-124.06Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1231_origBNL1231_origGossypium hirsutumsequence_feature


Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL1231 ID=BNL1231|Name=BNL1231|organism=Gossypium hirsutum|type=genetic_marker|length=199bp
TAATAAAAGGGAAAGGAAAGAGTTAAAAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAACTAAAACAAGACACACCCAGCGACAGGGTGAGCCAATAGAA
AGACAGAAATAAAACAAAGAAATTATTTGCATGCCTAAAATAGTTACATT
TCGTTGTTAGGTATGTTTTTAGAAAACGAGGGAATATTCTAGAGCCATA