BNL1122

Marker Overview
NameBNL1122
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1122_orig
Source Typegenomic
Repeat Motif(AG)16
PCR ConditionAnnealing temperature: 55
Primer 1BNL1122_F: TCGATAACGGCTATAGTAATCTCTC
Primer 2BNL1122_R: CAACAAATAAGCAGCCAAGAAA
PolymorphismP_ BNL1122
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c16N/AAD_chr.1651.82BNL1122View
2Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch16N/AAD_chr.1614.43BNL1122View
3Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr16N/AAD_chr.1617.7BNL1122View
4Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg21N/AAD_unknown48BNL1122View
5Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_chr16N/AAD_chr.1620BNL1122View
67235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D07-1N/AAD_chr.1634.7BNL1122View
7AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr16N/AAD_chr.16147BNL1122View
8Yumian-1 x T586, RIL (2006)YT-RIL_chr16-2N/AAD_chr.1647.4BNL1122View
97235 x TM-1, F2:3 (2005)7T-F2:3_chr16N/AAD_chr.167BNL1122View
10HS427-10 x TM-1, F2:3 (2005)HT-F2:3_chr16N/AAD_chr.1610.5BNL1122View
11Yumian-1 x T586, RIL (2015)YT-RIL.15_chr16N/AAD_chr.1673.2BNL1122View
12CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr16N/ADt.0733.8BNL1122View
13CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr16N/AAD_chr.16155.6BNL1122View
14HS-46 x MARCABUCAG8US-1-88, RIL (2009)HS-46 x MARCABUCAG8US-1-88, RIL (2009).HSM-RIL_chr16N/AAD_chr.167BNL1122-163View
15Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr07N/AAD_chr.0730BNL1122aView
16TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c16N/AAD_chr.1669.5BNL1122aView
17TM-1 x 3-79, RIL (2014)T3-RIL.14_chr16N/AAD_chr.1655.2BNL1122aView
18Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr16N/AAD_chr.16130BNL1122bView
19TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c07N/AAD_chr.0784.89BNL1122bView
20TM-1 x 3-79, RIL (2014)T3-RIL.14_chr07N/AAD_chr.0753.5BNL1122bView
21Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr16N/AAD_chr.164.8BNL1122-160View
22TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr16N/AAD_chr.1692.4BNL1122-160View
23TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr16/D1N/AAD_chr.1689BNL1122-160View
24H16 x T586, F2 (2009)H16T586-F2_chr16N/AAD_chr.1689.6BNL1122-160View
25Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr16N/AAD_chr.16115.2BNL1122-170View
26Yumian-1 x T586, RIL (2009)YT-RIL_chr16-2N/AAD_chr.1616.2BNL1122/180t(C16)View
27Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr16N/AAD_chr.1620BNL1122(C16)View
28CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr16N/ADt.07104.88BNL1122-104.876View
29TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.07N/AAD_chr.0753.54BNL1122b-53.536View
30TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.16N/AAD_chr.1655.16BNL1122a-55.159View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL1122_FBNL1122_FGossypium hirsutumprimer
BNL1122_RBNL1122_RGossypium hirsutumprimer


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber strengthqFS.TSP-BNL1122Gossypium spp.QTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1122BNL1122Gossypium hirsutummarker_locus
BNL1122-163BNL1122-163Gossypium hirsutummarker_locus
BNL1122aBNL1122aGossypium hirsutummarker_locus
BNL1122bBNL1122bGossypium hirsutummarker_locus
BNL1122-160BNL1122-160Gossypium hirsutummarker_locus
BNL1122-170BNL1122-170Gossypium hirsutummarker_locus
BNL1122/180t(C16)BNL1122/180t(C16)Gossypium hirsutummarker_locus
BNL1122(C16)BNL1122(C16)Gossypium hirsutummarker_locus
BNL1122BNL1122-104.876Gossypium hirsutummarker_locus
BNL1122bBNL1122b-53.536Gossypium hirsutummarker_locus
BNL1122aBNL1122a-55.159Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1122_origBNL1122_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr01chromosomeBNL1122:1..426 .
Chr01:29668797..29669238 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL1122 ID=BNL1122|Name=BNL1122|organism=Gossypium hirsutum|type=genetic_marker|length=174bp
TCGATAACGGCTATAGTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTATATATATATATATATATATCTGATCTGTCTTTTTACTGCTTCATTGA
CACGGCGCGCAGTTGTTTCTGTTCCTGTTCTCGTTGTTGTTGATGATCGG
TATTTCTTGGCTGCTTATTTGTTG