BNL1026

Marker Overview
NameBNL1026
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1026_orig
Source Typegenomic
Repeat Motif(TC)5+(AC)12+(AT)4
PCR ConditionAnnealing temperature: 55
Primer 1BNL1026_F: TTGGGATGTTTCCAAACGTT
Primer 2BNL1026_R: AAGCAATTTGACCGACAACC
PolymorphismP_ BNL1026
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 (2008)Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 (2008).JZ-F2_A13N/AA_chr.13113.3BNL1026View
2Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr07N/AAD_chr.0730BNL1026View
3Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg5/chr16N/AAD_chr.16125.6BNL1026View
4Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr07N/AAD_chr.0782.53BNL1026View
5AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr16N/AAD_chr.16131BNL1026View
6AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr07N/AAD_chr.0784BNL1026View
7Yumian-1 x T586, RIL (2006)YT-RIL_chr16-2N/AAD_chr.1650.7BNL1026View
8DH962 x Jinmian-6, F2 (2009)DJ-F2_chr07N/AAD_chr.0721.9BNL1026View
9DH962 x Jinmian-6, F2 (2009)DJ-F2_chr07/LG17N/AAD_chr.0721.9BNL1026View
10Yumian-1 x T586, RIL (2015)YT-RIL.15_chr16N/AAD_chr.1671.3BNL1026View
11DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr07-2N/AAD_chr.0771.58BNL1026View
12DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr16N/AAD_chr.1671.58BNL1026View
13GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr16N/AAD_chr.1631.2BNL1026View
14DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr17-1N/AAD_chr.17-149.7BNL1026View
15CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr16N/AAD_chr.16145.4BNL1026View
16Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr07N/AAD_chr.0730BNL1026aView
17TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c07N/AAD_chr.0786.93BNL1026aView
18TM-1 x 3-79, RIL (2014)T3-RIL.14_chr07N/AAD_chr.0750.2BNL1026aView
19Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr16N/AAD_chr.16130BNL1026bView
20TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c16N/AAD_chr.1682.92BNL1026bView
21TM-1 x 3-79, RIL (2014)T3-RIL.14_chr16N/AAD_chr.1641.3BNL1026bView
22TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr07/A7N/AAD_chr.0765.79BNL1026-195View
23TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr16/D1N/AAD_chr.1679.6BNL1026-300View
24H16 x T586, F2 (2009)H16T586-F2_chr16N/AAD_chr.1679.2BNL1026-300View
25Yumian-1 x T586, RIL (2009)YT-RIL_chr16-2N/AAD_chr.1619.5BNL1026/200yView
26CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr16N/ADt.07104.02BNL1026-104.018View
27TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.07N/AAD_chr.0750.21BNL1026a-50.212View
28TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.16N/AAD_chr.1641.25BNL1026b-41.251View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL1026_FBNL1026_FGossypium hirsutumprimer
BNL1026_RBNL1026_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber uniformityqFU.DJiM-RIL_ch17-1.h13Gossypium hirsutumQTL
lint percentqLP.DJiM-RIL_ch17-1.hj08-13Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1026BNL1026Gossypium hirsutummarker_locus
BNL1026aBNL1026aGossypium hirsutummarker_locus
BNL1026bBNL1026bGossypium hirsutummarker_locus
BNL1026-195BNL1026-195Gossypium hirsutummarker_locus
BNL1026-300BNL1026-300Gossypium hirsutummarker_locus
BNL1026/200yBNL1026/200yGossypium hirsutummarker_locus
BNL1026BNL1026-104.018Gossypium hirsutummarker_locus
BNL1026aBNL1026a-50.212Gossypium hirsutummarker_locus
BNL1026bBNL1026b-41.251Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1026_origBNL1026_origGossypium hirsutumsequence_feature


Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL1026 ID=BNL1026|Name=BNL1026|organism=Gossypium hirsutum|type=genetic_marker|length=125bp
TTGGGATGTTTCCAAACGTTTGTTTGTTCTTTCTTTTTGNCGTTTCTTCA
GAGTTTTTTCTTCTCTCTCTCACACACACACACACACACACACACATATA
TATAGGGTTGTCGGTCAAATTGCTT