BNL0946

Marker Overview
NameBNL0946
AliasBNL946
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0946_orig
Source Typegenomic
Repeat Motif(GA)14
PCR ConditionAnnealing temperature: 55
Primer 1BNL0946_F: GCTGTTGCTCCACATCTCCT
Primer 2BNL0946_R: GGGCAAACAGATAGGCAGAA
PolymorphismP_ BNL0946
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr20N/AAD_chr.2047.2BNL946View
2Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr20N/AAD_chr.2067.22BNL946View
3Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr20N/AAD_chr.20148BNL946View
4Guazuncho-2 x VH8-4602, BC2 (2005)Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr20N/AAD_chr.2065.9BNL946View
5Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_chr10/chr20N/AAD_chr.1027.6BNL946View
6Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_chr10/chr20N/AAD_chr.2027.6BNL946View
7Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr20N/AAD_chr.20172.1BNL946View
8DH962 x Jinmian-6, F2 (2009)DJ-F2_chr20.1N/AAD_chr.2043.2BNL946View
9DH962 x Jinmian-6, F2 (2009)DJ-F2_chr20/LG16N/AAD_chr.2043.2BNL946View
10DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr20N/AAD_chr.2046.61BNL946View
11TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr20-1N/AAD_chr.2059.5BNL946View
12DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr20N/AAD_chr.2062.8BNL946View
13CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr20N/ADt.1082.3BNL946View
14Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch20N/AAD_chr.2054.9BNL0946View
15TM-1 x 3-79, RIL (2006)TM-1 x 3-79, RIL (2006).T3-RIL_chr.20bN/AAD_chr.2038.9BNL0946View
16TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c20N/AAD_chr.2052.7BNL0946View
17Yumian-1 x T586, F2:7 (2008)Yumian-1 x T586, RIL (2008).YT-RIL_chr20.1N/AAD_chr.2023.1BNL0946View
18Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c20N/AAD_chr.2089.29BNL0946View
19AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr20N/AAD_chr.2077BNL0946View
20Yumian-1 x T586, RIL (2006)YT-RIL_chr20-2N/AAD_chr.2080.1BNL0946View
21(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr20-3N/AAD_chr.2031.1BNL0946View
22Yumian-1 x T586, RIL (2015)YT-RIL.15_chr20N/AAD_chr.2080.4BNL0946View
23Yumian-1 x 7235, RIL (2015)Y7-RIL_chr20N/AAD_chr.2057.8BNL0946View
24TM-1 x 3-79, RIL (2014)T3-RIL.14_chr20N/AAD_chr.2054BNL0946View
25CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr20N/AAD_chr.2098BNL0946View
26Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr20N/AAD_chr.2070BNL0946bView
27TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr20N/AAD_chr.2059.1BNL946-335View
28TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr20/D10N/AAD_chr.2060.87BNL946-335View
29Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr20.2N/AAD_chr.2037.9BNL946-335View
30Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr20.2N/AAD_chr.2037.9BNL946-1000View
31Yumian-1 x T586, RIL (2009)YT-RIL_chr20N/AAD_chr.2033.9BNL0946/310t(C20)View
32Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr10-2N/AAD_chr.1027.6BNL946(C20)View
33Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr20-1N/AAD_chr.2027.6BNL946(C20)View
34CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr20N/ADt.1066.92BNL0946-66.915View
35TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.20N/AAD_chr.2053.97BNL0946-53.971View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL0946_FBNL0946_FGossypium hirsutumprimer
BNL0946_RBNL0946_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL946BNL946Gossypium hirsutummarker_locus
BNL0946BNL0946Gossypium hirsutummarker_locus
BNL0946bBNL0946bGossypium hirsutummarker_locus
BNL946-335BNL946-335Gossypium hirsutummarker_locus
BNL946-1000BNL946-1000Gossypium hirsutummarker_locus
BNL0946/310t(C20)BNL0946/310t(C20)Gossypium hirsutummarker_locus
BNL946(C20)BNL946(C20)Gossypium hirsutummarker_locus
BNL0946BNL0946-66.915Gossypium hirsutummarker_locus
BNL0946BNL0946-53.971Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0946_origBNL0946_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeBNL0946:2..475 .
Chr11:28724683..28725102 -
Chr11chromosomeBNL0946:2..475 .
Chr11:26536851..26537270 +
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL0946 ID=BNL0946|Name=BNL0946|organism=Gossypium hirsutum|type=genetic_marker|length=329bp
GCTGTTGCTCCACATCTCCTGTTAAAAACAAGAACTGGTTTAATTTCTTT
CTTCATGATTGCTAATTCAAGACAAGACCAAGCTAATAAGATACACATAT
CACCTAAGAATAATTTAAGGTAACAAGGATAAGAAACAAACATAGATGCC
ACAAACTTGATTCTCACAAGGATAAGAAACAAACATAGATGCCACAAACT
TGATTCTCTTTCTTTTGCTAATAAAGCATGCGAACTACAGAATAGTGAAA
ATGTACCAGCCACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAACA
CAATGCTTTTTCTGCCTATCTGTTTGCCC