BNL0645

Marker Overview
NameBNL0645
AliasBNL645
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0645_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1BNL0645_F: TCCAAGGAAAACCAATCCAG
Primer 2BNL0645_R: TGGAACCTCCTTCGGTACAC
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr14N/AAD_chr.14150BNL0645View
2Yumian-1 x T586, RIL (2006)YT-RIL_chr14-2N/AAD_chr.1411.9BNL0645View
3Yumian-1 x T586, RIL (2015)YT-RIL.15_chr13N/AAD_chr.133.4BNL0645View
4Yumian-1 x 7235, RIL (2015)Y7-RIL_chr14N/AAD_chr.141BNL0645View
5CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr18N/AAD_chr.184.6BNL0645View
6Yumian-1 x T586, RIL (2009)YT-RIL_chr18-2N/AAD_chr.1811.9BNL0645/120tView
7CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr18N/ADt.131.36BNL0645-1.362View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL0645_FBNL0645_FGossypium hirsutumprimer
BNL0645_RBNL0645_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0645BNL0645Gossypium hirsutummarker_locus
BNL0645/120tBNL0645/120tGossypium hirsutummarker_locus
BNL0645BNL0645-1.362Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0645_origBNL0645_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:47940..48096 -
D04chromosomeD04:56917534..56917694 +
Ghir_A03chromosomeGhir_A03:103157678..103157822 -
Ghir_A11chromosomeGhir_A11:123125891..123126031 -
Ghir_D02chromosomeGhir_D02:50802..50952 -
Ghir_D11chromosomeGhir_D11:72885608..72885738 -
Ghir_A08chromosomeGhir_A08:45642..45776 +
Ghir_D04chromosomeGhir_D04:56397905..56398065 +
Ghir_D08chromosomeGhir_D08:68955..69091 +
Ghir_D11chromosomeGhir_D11:35460156..35460288 +
Scaffold423supercontigScaffold423:15832..15954 +
Scaffold423supercontigScaffold423:60121..60261 +
Scaffold514supercontigScaffold514:24199..24327 +
D02chromosomeD02:48021..48177 -
scaffold222608supercontigscaffold222608:33..189 -
D04chromosomeD04:51442453..51442613 +
Dt_chr12chromosomeDt_chr12:4148743..4148903 -
At_chr1chromosomeAt_chr1:106934840..106934996 +
CM016621.1chromosomeCM016621.1:37033..37201 +
D10_04chromosomeD10_04:29301..29467 -
D10_13chromosomeD10_13:60750245..60750391 +
Chr5chromosomeChr5:7711..7861 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:34253..34409 +
D5_03chromosomeD5_03:62992573..62992723 +
CM018216.1chromosomeCM018216.1:40543..40695 -
CM018225.1chromosomeCM018225.1:34370402..34370552 +
D02chromosomeD02:56797..56953 -
D04chromosomeD04:56570912..56571072 +
Chr04chromosomeBNL0645:1..270 .
Chr04:62172408..62172645 -
Chr5chromosomeBNL0645:1..270 .
Chr5:7606..7865 -
Chr09chromosomeBNL0645:1..270 .
Chr09:70685746..70685995 -
Chr07chromosomeBNL0645:1..270 .
Chr07:60954571..60954804 -
Chr06chromosomeBNL0645:1..270 .
Chr06:51049228..51049455 -
Chr05chromosomeBNL0645:1..270 .
Chr05:37925..38184 -
Chr07chromosomeBNL0645:2..270 .
Chr07:33070463..33070717 +
Chr8chromosomeBNL0645:2..270 .
Chr8:1009626..1009880 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL0645 ID=BNL0645|Name=BNL0645|organism=Gossypium hirsutum|type=genetic_marker|length=161bp
TCCAAGGAAAACCAATCCAGATAAGTACTAACTTTAATTTCAAACACAAA
TTCTATGTGGCTAAAGGCCTGCCTAGCTCTGTGTGTGTGTGCGTGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATATGAAGTGTACCGA
AGGAGGTTCCA