BNL0645

Marker Overview
NameBNL0645
AliasBNL645
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0645_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1BNL0645_F: TCCAAGGAAAACCAATCCAG
Primer 2BNL0645_R: TGGAACCTCCTTCGGTACAC
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr14N/AAD_chr.14150BNL0645View
2Yumian-1 x T586, RIL (2006)YT-RIL_chr14-2N/AAD_chr.1411.9BNL0645View
3Yumian-1 x T586, RIL (2015)YT-RIL.15_chr13N/AAD_chr.133.4BNL0645View
4Yumian-1 x 7235, RIL (2015)Y7-RIL_chr14N/AAD_chr.141BNL0645View
5CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr18N/AAD_chr.184.6BNL0645View
6Yumian-1 x T586, RIL (2009)YT-RIL_chr18-2N/AAD_chr.1811.9BNL0645/120tView
7CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr18N/ADt.131.36BNL0645-1.362View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL0645_FBNL0645_FGossypium hirsutumprimer
BNL0645_RBNL0645_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0645BNL0645Gossypium hirsutummarker_locus
BNL0645/120tBNL0645/120tGossypium hirsutummarker_locus
BNL0645BNL0645-1.362Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0645_origBNL0645_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr04chromosomeBNL0645:1..270 .
Chr04:62172408..62172645 -
Chr5chromosomeBNL0645:1..270 .
Chr5:7606..7865 -
Chr09chromosomeBNL0645:1..270 .
Chr09:70685746..70685995 -
Chr07chromosomeBNL0645:1..270 .
Chr07:60954571..60954804 -
Chr06chromosomeBNL0645:1..270 .
Chr06:51049228..51049455 -
Chr05chromosomeBNL0645:1..270 .
Chr05:37925..38184 -
Chr07chromosomeBNL0645:2..270 .
Chr07:33070463..33070717 +
Chr8chromosomeBNL0645:2..270 .
Chr8:1009626..1009880 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL0645 ID=BNL0645|Name=BNL0645|organism=Gossypium hirsutum|type=genetic_marker|length=161bp
TCCAAGGAAAACCAATCCAGATAAGTACTAACTTTAATTTCAAACACAAA
TTCTATGTGGCTAAAGGCCTGCCTAGCTCTGTGTGTGTGTGCGTGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATATGAAGTGTACCGA
AGGAGGTTCCA