BNL0584

Marker Overview
NameBNL0584
AliasBNL584
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0584_orig
Source Typegenomic
Repeat Motif(AG)12
PCR ConditionAnnealing temperature: 55
Primer 1BNL0584_F: ATACATTCACAGAAGAAAAAAATATATACC
Primer 2BNL0584_R: TGAATCACATATTGCCCCCT
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1MGG-293-793, MAGIC (2018)MAGIC-19831_chr06N/AAD_chr.0617.5BNL584-17.5View
2CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr06N/AAD_chr.06160BNL584bView
3Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr25N/AAD_chr.25167.7BNL584bView
4CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr25N/AAD_chr.2510.4BNL584aView
5Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr25N/AAD_chr.2598BNL584aView
6Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr06N/AAD_chr.0617.26BNL584View
7Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg7/chr25N/AAD_chr.250BNL584View
8DH962 x Jinmian-6, F2 (2009)DJ-F2_chr25.2N/AAD_chr.2516.9BNL584View
9DH962 x Jinmian-6, F2 (2009)DJ-F2_chr25/LG35N/AAD_chr.2516.9BNL584View
10DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr25-2N/AAD_chr.257.33BNL584View
11DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr25-2N/AAD_chr.25-229.6BNL584View
12Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr25N/AAD_chr.2588.6BNL584d*View
13Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr25N/AAD_chr.2588.6BNL584e*View
14Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr25N/AAD_chr.25163.2BNL584cView
15Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr06N/AAD_chr.06110BNL0584aView
16TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c06N/AAD_chr.06123.04BNL0584aView
17TM-1 x 3-79, RIL (2014)T3-RIL.14_chr06N/AAD_chr.06123BNL0584aView
18Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr25N/AAD_chr.25110BNL0584bView
19TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c25N/AAD_chr.25116.45BNL0584bView
20TM-1 x 3-79, RIL (2014)T3-RIL.14_chr25N/AAD_chr.25116.2BNL0584bView
21AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr25N/AAD_chr.257bnl0584View
22AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr06N/AAD_chr.06192bnl0584View
23Yumian-1 x 7235, RIL (2015)Y7-RIL_chr25N/AAD_chr.2581.5bnl0584View
240-153 x sGK9708, RIL (2015)0s-RIL.15_chr25N/AAD_chr.25178.8bnl0584View
250-153 x sGK9708, RIL (2016)0s-RIL_chr25-1N/AAD_chr.250bnl0584View
26TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.06N/AAD_chr.06123.04BNL0584a-123.038View
27TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.25N/AAD_chr.25116.24BNL0584b-116.242View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL0584_FBNL0584_FGossypium hirsutumprimer
BNL0584_RBNL0584_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber elongationqFEL.DJiM-RIL_ch25-2.j08Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL584BNL584-17.5Gossypium hirsutummarker_locus
BNL584bBNL584bGossypium hirsutummarker_locus
BNL584aBNL584aGossypium hirsutummarker_locus
BNL584BNL584Gossypium hirsutummarker_locus
BNL584d*BNL584d*Gossypium hirsutummarker_locus
BNL584e*BNL584e*Gossypium hirsutummarker_locus
BNL584cBNL584cGossypium hirsutummarker_locus
BNL0584aBNL0584aGossypium hirsutummarker_locus
BNL0584bBNL0584bGossypium hirsutummarker_locus
bnl0584bnl0584Gossypium hirsutummarker_locus
BNL0584aBNL0584a-123.038Gossypium hirsutummarker_locus
BNL0584bBNL0584b-116.242Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0584_origBNL0584_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeBNL0584:1..243 .
Chr10:998131..998368 -
Chr10chromosomeBNL0584:1..243 .
Chr10:1032627..1032866 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL0584 ID=BNL0584|Name=BNL0584|organism=Gossypium hirsutum|type=genetic_marker|length=184bp
ATACATTCACAGAAGAAAAAAATATATACCTTTTATTCTTTTTATCATAA
TTCATTTTATAAGTAATATATATATATATATAGAGAGAGAGAGAGAGAGA
GAGAGATGGTTAGCCAACACCAACTTGTGGTTGATTTTTACCCCCTTCTA
TTAAAATCATGGGTAGGGGGCAATATGTGATTCA