BNL0569

Marker Overview
NameBNL0569
AliasBNL569
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0569_orig
Source Typegenomic
Repeat Motif(AG)20
PCR ConditionAnnealing temperature: 55
Primer 1BNL0569_F: TTGAGAAGTACTACCATTAATTATCCA
Primer 2BNL0569_R: GACTGATGCCAGTTGACCCT
PolymorphismP_ BNL0569
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr13N/AAD_chr.1392.6BNL569aView
2Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr18N/AAD_chr.1872.86BNL569bView
3Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr13N/AAD_chr.1370BNL0569aView
4TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c18N/AAD_chr.1860.36BNL0569aView
5TM-1 x 3-79, RIL (2014)T3-RIL.14_chr18N/AAD_chr.1861.3BNL0569aView
6Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr18N/AAD_chr.1870BNL0569bView
7TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c13N/AAD_chr.1388.63BNL0569bView
8TM-1 x 3-79, RIL (2014)T3-RIL.14_chr13N/AAD_chr.1385BNL0569bView
9AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr18N/AAD_chr.1836bnl0569View
10AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr13N/AAD_chr.1375bnl0569View
11Yumian-1 x 7235, RIL (2015)Y7-RIL_chr13N/AAD_chr.133.3bnl0569View
12SG 747 x Giza 75, BIL (2013)SG-BIL_chr18N/AAD_chr.18145.9bnl0569View
13GB713 x Nem-X, F2 (2011)GN-F2_chr18N/AAD_chr.1842.8BNL569_131View
14GX1135 x GX100-2, F2 (2013)GG-F2_chr13N/AAD_chr.1358.1BNL569View
15TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.13N/AAD_chr.1385BNL0569b-84.997View
16TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.18N/AAD_chr.1861.33BNL0569a-61.331View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL0569_FBNL0569_FGossypium hirsutumprimer
BNL0569_RBNL0569_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
seed cotton weight per bollqBWT.SG-BIL_ch18.aksu07.2Gossypium hirsutum x barbadenseQTL
lint yieldqLY.SG-BIL_ch18.aksu07Gossypium hirsutum x barbadenseQTL
micronaireqMIC.SG-BIL_ch18.ay07Gossypium hirsutum x barbadenseQTL
seed cotton yieldqSCY.SG-BIL_ch18.aksu07Gossypium hirsutum x barbadenseQTL


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
2.5 span lengthqSL2.5.TSP-BNL0569Gossypium spp.QTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL569aBNL569aGossypium hirsutummarker_locus
BNL569bBNL569bGossypium hirsutummarker_locus
BNL0569aBNL0569aGossypium hirsutummarker_locus
BNL0569bBNL0569bGossypium hirsutummarker_locus
bnl0569bnl0569Gossypium hirsutummarker_locus
BNL569_131BNL569_131Gossypium hirsutummarker_locus
BNL569BNL569Gossypium hirsutummarker_locus
BNL0569bBNL0569b-84.997Gossypium hirsutummarker_locus
BNL0569aBNL0569a-61.331Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0569_origBNL0569_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr13chromosomeBNL0569:1..228 .
Chr13:47353483..47353704 +
scaffold485supercontigBNL0569:1..228 .
scaffold485:103218..103437 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL0569 ID=BNL0569|Name=BNL0569|organism=Gossypium hirsutum|type=genetic_marker|length=140bp
TTGAGAAGTACTACCATTAATTATCCAAAAATAAGAAAAAAAGGAAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGGTGCCACCATT
CTAAATCTTTTTATTTCTCCAGGGTCAACTGGCATCAGTC