BNL0519

Marker Overview
NameBNL0519
AliasBNL519
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0519_orig
Source Typegenomic
Repeat Motif(GA)16
PCR ConditionAnnealing temperature: 55
Primer 1BNL0519_F: CTCTACAACGCACCTTCACG
Primer 2BNL0519_R: CCGAACAAAGAGCTTTGAGG
CommentPrimer data obtained in 2000
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr14N/AAD_chr.1424.01BNL519View
2Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr14N/AAD_chr.1490BNL0519View
3TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c14N/AAD_chr.1472.59BNL0519View
4Yumian-1 x T586, RIL (2006)YT-RIL_chr14-3N/AAD_chr.1411.7BNL0519View
5Yumian-1 x T586, RIL (2015)YT-RIL.15_chr14N/AAD_chr.1451.9BNL0519View
6Yumian-1 x 7235, RIL (2015)Y7-RIL_chr14N/AAD_chr.1444.4BNL0519View
7TM-1 x 3-79, RIL (2014)T3-RIL.14_chr14N/AAD_chr.1453.8BNL0519View
8Yumian-1 x T586, RIL (2009)YT-RIL_chr14-1N/AAD_chr.1478.9BNL0519/110yView
9TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.14N/AAD_chr.1453.84BNL0519-53.835View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL0519_FBNL0519_FGossypium hirsutumprimer
BNL0519_RBNL0519_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL519BNL519Gossypium hirsutummarker_locus
BNL0519BNL0519Gossypium hirsutummarker_locus
BNL0519/110yBNL0519/110yGossypium hirsutummarker_locus
BNL0519BNL0519-53.835Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0519_origBNL0519_origGossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr05chromosomeBNL0519:1..309 .
Chr05:19207783..19208079 -
Chr6chromosomeBNL0519:1..309 .
Chr6:36241696..36241992 -
Germplasm
Stock NameType
Deltapine 90TBD
Sequence
>BNL0519 ID=BNL0519|Name=BNL0519|organism=Gossypium hirsutum|type=genetic_marker|length=252bp
CTCTACAACGCACCTTCACGCCGGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAAATGACATCGGATGGGGCGACGTCGACGCCGGCTCCAAGGAGGAA
ACCGTCGTGGAGGGAGAGGGAGAATAACAGGAGGAGAGAAAGGAGGAGAA
GAGCCATTGCTGCTAAGATTTATACTGGCCTTAGAGCTCAAGGGAACTAC
AATTTGCCCAAGCACTGTGATAACAATGAGGTCCTCAAAGCTCTTTGTTC
GG