TMB0312

Marker Overview
NameTMB0312
AliasTMK12
Genbank IDBV679337
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679337.1
Source Typegenomic
Repeat Motif(CA)20
PCR ConditionAnnealing temperature: 55
Primer 1TMB0312_F: AGCTTTTCCATTCCAGAGCA
Primer 2TMB0312_R: GGTTGTTGCAAGAGTTCACG
Product Length207
PolymorphismP_ TMB0312
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679337
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
17235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D09-3N/AAD_chr.2332.7TMK12bView
27235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D09-3N/AAD_chr.2346.3TMK12aView
3TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c13N/AAD_chr.1389.82tmb0312View
4AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr13N/AAD_chr.1350tmb0312View
5Yumian-1 x T586, RIL (2006)YT-RIL_chr13-1N/AAD_chr.1313.2tmb0312View
6Yumian-1 x T586, RIL (2015)YT-RIL.15_chr13N/AAD_chr.13123.4tmb0312View
7TM-1 x 3-79, RIL (2014)T3-RIL.14_chr13N/AAD_chr.1386.3tmb0312View
8Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgA01N/AAD_chr.130TMK12-210View
9Yumian-1 x T586, RIL (2009)YT-RIL_chr13-1N/AAD_chr.1313.2TMB0312/190yView
100-153 x sGK9708, RIL (2016)0s-RIL_chr13N/AAD_chr.1379.2TMK12View
110-153 x sGK9708, RIL (2017)0s-RIL.17_chr13N/AAD_chr.1316.58TMK12View
12TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.13N/AAD_chr.1386.29TMB0312-86.288View
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
TMB0312_FTMB0312_FGossypium hirsutumprimer
TMB0312_RTMB0312_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
boll sizeqBS.7T-ch23.e2Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
TMK12bTMK12bGossypium hirsutummarker_locus
TMK12aTMK12aGossypium hirsutummarker_locus
tmb0312tmb0312Gossypium hirsutummarker_locus
TMK12-210TMK12-210Gossypium hirsutummarker_locus
TMB0312/190yTMB0312/190yGossypium hirsutummarker_locus
TMK12TMK12Gossypium hirsutummarker_locus
TMB0312TMB0312-86.288Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679337.1BV679337.1Gossypium hirsutumsequence_feature


Germplasm
Stock NameType
TM-1TBD
Sequence
>TMB0312 ID=TMB0312|Name=TMB0312|organism=Gossypium hirsutum|type=genetic_marker|length=207bp
AGCTTTTCCATTCCAGAGCATTTTAAGCATCATAAGGGAAAAAACACACA
CACACACACACACACACACACACACACACACACATTATCATACAATTAAA
AGCATGATGGATTGCAAACTTCAGAAGACCCAATTTAGCAATATAGTCTT
CTTCATTTCTCAATATTCACTTACCAGCTGAGGTTCCCGTGAACTCTTGC
AACAACC