Gh216

Marker Overview
NameGh216
Genbank IDDQ908158
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908158
Source Typegenomic
Repeat MotifCT(15)
Primer 1Gh216_F: TCCACATTCCCATGCACTACTC
Primer 2Gh216_R: CTAAAACCTTATACATACAAAATGCAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908158
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c01N/AAD_chr.0162.78Gh216View
2Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr01N/AAD_chr.0137.77Gh216View
3Yumian-1 x 7235, RIL (2015)Y7-RIL_chr01N/AAD_chr.0146Gh216View
4DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr01N/AAD_chr.0192.7Gh216View
5DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr15-1N/AAD_chr.1592.7Gh216View
6TM-1 x 3-79, RIL (2014)T3-RIL.14_chr01N/AAD_chr.0181.6Gh216View
7DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr01N/AAD_chr.0139.2Gh216View
8DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr15N/AAD_chr.1539.2Gh216View
9CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr01N/AAD_chr.01129.1Gh216View
10CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr01N/AAt.0134.05Gh216-34.054View
11TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.01N/AAD_chr.0181.6GH216-81.601View
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
Gh216_FGh216_FGossypium hirsutumprimer
Gh216_RGh216_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber elongationqFEL.DJiM-RIL_ch01.j09.1Gossypium hirsutumQTL
fiber elongationqFEL.DJiM-RIL_ch15.j09.1Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Gh216Gh216Gossypium hirsutummarker_locus
Gh216Gh216-34.054Gossypium hirsutummarker_locus
GH216GH216-81.601Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908158DQ908158Gossypium hirsutumsequence_feature


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr02chromosomeGh216:1..498 .
Chr02:25379596..25380073 -
Chr2chromosomeGh216:1..498 .
Chr2:30497038..30497515 -
Germplasm
Stock NameType
Tamcot SphinxTBD
Sequence
>Gh216 ID=Gh216|Name=Gh216|organism=Gossypium hirsutum|type=genetic_marker|length=90bp
TCCACATTCCCATGCACTACTCAATTTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTTTCTTGCTGCATTTTGTATGTATAAGGTTTTAG