Data Template
Template TypePHENOTYPE
Templateqtl_trait_data
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Headers
ColumnDescription
* dataset_name name of the QTL trait study, the dataset_name should exist in 'dataset_name' column of the 'Dataset' sheet. A-B-C-D system
A: common name of species (scientific name if not available and genus name if cross-species)
B: trait_name (usually an article report multiple QTL for a trait)
C: Last name of the corresponding author
D: publish year
* stock_nameName of the population or parent of the population, The name should exist in the 'stock_name' column of the 'Stock' sheet.
* genusGenus to which the stock belongs to.
* speciesSpecies name. Enter 'sp.' to represent one unknown species, 'spp.' to represent multiple unknown species.
* descriptorName of the trait. It should exist in 'trait_name' column of the 'Trait' sheet and 'QTL' sheet.
trait_descriptor_setThe name of the crop trait ontology that is stored in cv table of chado (eg. 'rosaceae_trait_ontology' for GDR, 'cotton_trait_ontology' for cotton). In Main Lab, we develop crop trait ontology for Rosaceae, cool season food legumes, cotton and citrus, and map them to the Plant Trait Ontology. If not provided, the site trait ontology will be used.
site_nameLocation/environment where the plant was grown. Site_name should exist in 'site_name' column of the 'Site' sheet. If the phenotypic measurement has bee done in multiple years, create multiple site_code even if it is done in the same location.
* meanThe mean value of the traits for each parent and progeny.
min_valueThe minimum value of the traits for each parent and progeny.
max_valueThe maximum value of the traits for each parent and progeny.
standard_deviation
coefficient_of_variation
skewness
h2
CI_90Confidence Intervals
comments
reference
* Required field
cvterms
cv.namecvterm.name
MAINci_90
MAINcoefficient_of_variation
MAINcomments
MAINh2
MAINphenotyping
MAINskewness
MAINstandard_deviation
MAINstatistical