EVM_prediction_Ga03G2028, evm.model.Ga03G2028_CRI-A2_v1.0.a1 (mRNA) Gossypium arboreum

Transcript Overview
NameEVM_prediction_Ga03G2028
Unique Nameevm.model.Ga03G2028_CRI-A2_v1.0.a1
TypemRNA
OrganismGossypium arboreum (Tree cotton)
Sequence length861
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:126182782..126184710 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abacL0640Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abacL0782Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abacL1776Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
acrbR1085Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
acrbR1096Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
achnR1231Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
achnR1246Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
achnR1262Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
achnR1268Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
achnR1333Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
achnR1344Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
achbR1525Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
achbR1561Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
achbR1634Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
achbR1639Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
acghR0910Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
acghR0924Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
acghR0985Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
acacL0050Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acacL0399Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acacR0701Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acacR0738Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acrjR0686Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
acrjR0691Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
acrjR0726Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
acbhR1380Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
acbhR1481Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
acbhR1490Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
achjR1212Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
achjR1226Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
achjR1232Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
achjR1298Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
achjR1307Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
acgbR0956Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
acgbR0972Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
acgbR1031Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
acgbR1046Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
acbzR1165Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
acbzR1186Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
acbzR1202Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
acbzR1207Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
acbzR1269Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
acbzR1279Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
achzR1159Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
achzR1179Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
achzR1196Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
achzR1201Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
achzR1267Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
achzR1276Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
acgkR0717Gossypioides kirkii genome ISU_v3Gossypioides kirkii
acgkR0723Gossypioides kirkii genome ISU_v3Gossypioides kirkii
acgkR0741Gossypioides kirkii genome ISU_v3Gossypioides kirkii
acgrbR0799Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
acgrbR0821Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
acgrbR0852Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
acgtbR0845Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
acgtbR0877Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
acgtbR0906Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
acghzR1012Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
acghzR1029Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
acghzR1045Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
acghzR1105Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
acghzR1115Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
acghtR1128Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
acghtR1148Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
acghtR1161Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
acghtR1166Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
acghtR1232Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
acghtR1240Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
acgauR0700Gossypium australe (G2) genome CRI_v1.1Gossypium australe
acgauR0732Gossypium australe (G2) genome CRI_v1.1Gossypium australe
acgauR0759Gossypium australe (G2) genome CRI_v1.1Gossypium australe
acadR0976Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
acadR0989Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
acadR1010Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
acadR1066Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
acadR1075Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
achgsR0975Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
achgsR0988Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
achgsR1002Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
achgsR1004Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
achgsR1065Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
achgsR1076Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
actoR0966Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
actoR0981Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
actoR0995Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
actoR0999Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
actoR1053Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
actoR1064Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
acgdR1048Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
acgdR1064Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
acgdR1076Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
acgdR1081Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
acgdR1148Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
acgdR1158Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
acfnR0833Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
acfnR0862Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
acfnR0877Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
acdtR0755Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
acdtR0767Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
acdtR0777Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
achwR0891Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
achwR0919Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
achwR0949Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
acawR0841Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
acawR0863Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
acawR0897Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
actwR1162Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
actwR1181Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
actwR1199Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
actwR1204Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
actwR1272Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
actwR1283Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
acuhR0958Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
acuhR0974Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
acuhR0986Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
acuhR0990Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
acuhR1049Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
acuhR1057Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
acdtoR0574Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
acdtoR0577Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
acdtoR0610Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
acdttR0630Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
acdttR0662Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
acdfiR0629Gossypium aridum (D4) genome ISU_v1Gossypium aridum
acdfiR0652Gossypium aridum (D4) genome ISU_v1Gossypium aridum
acdfiR0674Gossypium aridum (D4) genome ISU_v1Gossypium aridum
acgtiR0947Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
acgtiR0960Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
acgtiR1004Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
acdriR0689Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
acdriR0692Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
acdriR0724Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
acdsiR0534Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
acdsiR0562Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
acdqiR0641Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
acdqiR0662Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
acdqiR0682Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
acgroR0902Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
acgroR0936Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
acgroR0976Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
acgahR0857Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
acgahR0884Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
acgahR0916Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
acgcfR0702Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
acgcfR0723Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
acgcfR0746Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum

Orthologs
Gene/TranscriptAssemblySpecies
Ghicr24_A03G174300.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gh_A03G1330Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
CotAD_52168Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Gh_A03G176300.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Ghi_A03G10091Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
Ghe03G07900Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gar03G07870Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Cotton_A_10025Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EVM_prediction_Ga03G2028evm.TU.Ga03G2028_CRI-A2_v1.0.a1Gossypium arboreumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Ga03G2028.exon1_CRI-A2_v1.0.a1evm.model.Ga03G2028.exon1_CRI-A2_v1.0.a1Gossypium arboreumexon
evm.model.Ga03G2028.exon2_CRI-A2_v1.0.a1evm.model.Ga03G2028.exon2_CRI-A2_v1.0.a1Gossypium arboreumexon
evm.model.Ga03G2028.exon3_CRI-A2_v1.0.a1evm.model.Ga03G2028.exon3_CRI-A2_v1.0.a1Gossypium arboreumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.evm.model.Ga03G2028_CRI-A2_v1.0.a1cds.evm.model.Ga03G2028_CRI-A2_v1.0.a1Gossypium arboreumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
EVM_prediction_Ga03G2028evm.model.Ga03G2028_CRI-A2_v1.0.a1-proteinGossypium arboreumpolypeptide
evm.model.Ga03G2028_CRI-A2_v1.0.a1evm.model.Ga03G2028_CRI-A2_v1.0.a1Gossypium arboreumpolypeptide


Homology
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|1347719021|gb|PPS15345.1| (hypothetical protein GOBAR_AA05219 [Gossypium barbadense])

HSP 1 Score: 303.908 bits (777), Expect = 8.299e-101
Identity = 206/236 (87.29%), Postives = 211/236 (89.41%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGNVGTSVGGSVGFSVGGSVASIGGSVGSLIGVPVGVNVIGGNVIGGNVIGGIGGKNGDLIGGNGGNNDNVIGDTSISDTC 286
            +  SSISRTPKFYKEYRDFIINKYREDPSH FTFTEIHKSLIDDVTLLHKVF FLEAWGLITFVAPPPP KGSENDDRVRVKN+TSNGVWVIATPNSLRSLSVEVVKGKNS DGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSG+    +GNVGTS         G    S+GGSVGS IGVPVGVNVIG NVIGGNVIGGIGGKNGDLIGGNGGNNDNVIGDTSISDTC
Sbjct:    9 FEGSSISRTPKFYKEYRDFIINKYREDPSHRFTFTEIHKSLIDDVTLLHKVFCFLEAWGLITFVAPPPPRKGSENDDRVRVKNETSNGVWVIATPNSLRSLSVEVVKGKNSSDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGF--GIQGNVGTS-------VGGSVGFSVGGSVGSSIGVPVGVNVIGANVIGGNVIGGIGGKNGDLIGGNGGNNDNVIGDTSISDTC 235
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|1347712795|gb|PPS09774.1| (hypothetical protein GOBAR_AA10870 [Gossypium barbadense])

HSP 1 Score: 298.901 bits (764), Expect = 1.981e-94
Identity = 149/189 (78.84%), Postives = 155/189 (82.01%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS----------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYS           SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSKRQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 196
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|1050628688|ref|XP_017637260.1| (PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Gossypium arboreum] >gi|728850741|gb|KHG30184.1| SWI/SNF complex subunit SWI3A -like protein [Gossypium arboreum])

HSP 1 Score: 295.819 bits (756), Expect = 2.623e-93
Identity = 150/200 (75.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 207
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|1028968688|ref|XP_016727867.1| (PREDICTED: SWI/SNF complex subunit SWI3A-like isoform X2 [Gossypium hirsutum])

HSP 1 Score: 295.819 bits (756), Expect = 2.680e-93
Identity = 150/200 (75.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 207
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|1028968686|ref|XP_016727866.1| (PREDICTED: SWI/SNF complex subunit SWI3A-like isoform X1 [Gossypium hirsutum])

HSP 1 Score: 295.819 bits (756), Expect = 2.733e-93
Identity = 150/200 (75.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 207
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|1050628686|ref|XP_017637259.1| (PREDICTED: SWI/SNF complex subunit SWI3A isoform X1 [Gossypium arboreum])

HSP 1 Score: 295.434 bits (755), Expect = 3.427e-93
Identity = 150/200 (75.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 207
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|1029074549|ref|XP_016697502.1| (PREDICTED: SWI/SNF complex subunit SWI3A-like isoform X2 [Gossypium hirsutum])

HSP 1 Score: 290.812 bits (743), Expect = 1.913e-91
Identity = 148/198 (74.75%), Postives = 154/198 (77.78%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGYYEYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYYEYKK 205
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|1029074547|ref|XP_016697501.1| (PREDICTED: SWI/SNF complex subunit SWI3A-like isoform X1 [Gossypium hirsutum])

HSP 1 Score: 291.197 bits (744), Expect = 2.079e-91
Identity = 148/198 (74.75%), Postives = 154/198 (77.78%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGYYEYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYYEYKK 205
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|763784155|gb|KJB51226.1| (hypothetical protein B456_008G207800 [Gossypium raimondii])

HSP 1 Score: 283.878 bits (725), Expect = 2.581e-90
Identity = 146/198 (73.74%), Postives = 153/198 (77.27%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSG GVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGY+EYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGGGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYHEYKK 205
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Match: gi|763784153|gb|KJB51224.1| (hypothetical protein B456_008G207800 [Gossypium raimondii] >gi|763784154|gb|KJB51225.1| hypothetical protein B456_008G207800 [Gossypium raimondii] >gi|763784156|gb|KJB51227.1| hypothetical protein B456_008G207800 [Gossypium raimondii])

HSP 1 Score: 283.878 bits (725), Expect = 3.118e-90
Identity = 146/198 (73.74%), Postives = 153/198 (77.27%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSG GVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGY+EYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGGGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYHEYKK 205
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. TAIR10
Match: AT2G47620.1 (| Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose nonfermenting 3A | chr2:19532034-19534251 FORWARD LENGTH=512)

HSP 1 Score: 145.206 bits (365), Expect = 8.077e-40
Identity = 77/164 (46.95%), Postives = 100/164 (60.98%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKR----LHYGSCGDNCDSGYYEYKKGNVG 210
            ++ SSI+RTPK YKEYRDFIINK+RED     TFT + K L+ DV LL KVF FLE WGLI F +         + D  +++  T  G+ V ATPNSLR ++   +  +       E G+K+PPL SYSDVF DLK+    L    CG+ CDS +Y++ KG V 
Sbjct:   39 FTESSITRTPKVYKEYRDFIINKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDNAKIEQGTPAGIRVTATPNSLRPITAPPLVEERV-----ETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCGERCDSPFYQHNKGIVN 197
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. TAIR10
Match: AT2G33610.1 (| Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 | chr2:14229023-14231149 FORWARD LENGTH=469)

HSP 1 Score: 63.929 bits (154), Expect = 1.898e-11
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITF--VAPPPPCKGSEND 126
            + S S S+ PKFY   R+ II +YR+D     +FT++ ++L+ DV  + +VF FL++WGLI +   A   P K  E +
Sbjct:   74 FDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSASAKPLKWEEKE 151
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. TAIR10
Match: AT1G21700.1 (| Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose nonfermenting 3C | chr1:7620156-7623978 REVERSE LENGTH=807)

HSP 1 Score: 55.0694 bits (131), Expect = 2.402e-8
Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLID--DVTLLHKVFRFLEAWGLITFVA 115
            +S  S + TP+ Y E+R+ I++KY E+P  + T ++  + L+D  D+    +VFRFL+ WG+I + A
Sbjct:  202 FSGKSPNHTPESYMEFRNAIVSKYVENPEKTLTISDC-QGLVDGVDIEDFARVFRFLDHWGIINYCA 267
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana OX=3702 GN=SWI3A PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.120e-38
Identity = 77/164 (46.95%), Postives = 100/164 (60.98%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKR----LHYGSCGDNCDSGYYEYKKGNVG 210
            ++ SSI+RTPK YKEYRDFIINK+RED     TFT + K L+ DV LL KVF FLE WGLI F +         + D  +++  T  G+ V ATPNSLR ++   +  +       E G+K+PPL SYSDVF DLK+    L    CG+ CDS +Y++ KG V 
Sbjct:   39 FTESSITRTPKVYKEYRDFIINKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDNAKIEQGTPAGIRVTATPNSLRPITAPPLVEERV-----ETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCGERCDSPFYQHNKGIVN 197
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SWI3B_ARATH (SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana OX=3702 GN=SWI3B PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.630e-10
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITF--VAPPPPCKGSEND 126
            + S S S+ PKFY   R+ II +YR+D     +FT++ ++L+ DV  + +VF FL++WGLI +   A   P K  E +
Sbjct:   74 FDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSASAKPLKWEEKE 151
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SSR2_SCHPO (SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr2 PE=1 SV=3)

HSP 1 Score: 62.7734 bits (151), Expect = 6.563e-10
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0 
Query:   58 RTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPP 117
            +TP  YK+YRDF+IN YR +P+   T T   ++L+ DV  + +V  FLE WGLI +   P
Sbjct:   51 KTPSIYKDYRDFMINSYRLEPNEYLTVTACRRNLVGDVCAIIRVHAFLEQWGLINYQIDP 110
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SSR1_SCHPO (SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr1 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.682e-9
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0 
Query:   57 SRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPP 117
            S+TP+ YKEYRDF+I+ +R +     TFT   ++L  DV  + +V RFLE WGLI +   P
Sbjct:   84 SKTPEVYKEYRDFMISTFRLNSKVYLTFTACRRNLAGDVCAVLRVHRFLEQWGLINYNVNP 144
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: RSC8_YEAST (Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RSC8 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.027e-8
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPP 117
            ++ SS  +TPK YK+ R+FIIN YR  P    T T + +++  DV  + K+  FLE WGLI +   P
Sbjct:  106 FNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTITAVRRNVAMDVASIVKIHAFLEKWGLINYQIDP 172
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens OX=9606 GN=SMARCC1 PE=1 SV=3)

HSP 1 Score: 57.3806 bits (137), Expect = 5.091e-8
Identity = 34/106 (32.08%), Postives = 51/106 (48.11%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPP---PPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSV 153
            ++  + S+TP+ Y  YR+F+I+ YR +P    T T   ++L  DV  + +V  FLE WGL+ +   P   P   G        V   T +G+     P  LRS  V
Sbjct:  475 FNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGL----VPLHLRSPQV 576
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SMRC1_MOUSE (SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX=10090 GN=Smarcc1 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 6.443e-8
Identity = 34/106 (32.08%), Postives = 51/106 (48.11%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPP---PPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSV 153
            ++  + S+TP+ Y  YR+F+I+ YR +P    T T   ++L  DV  + +V  FLE WGL+ +   P   P   G        V   T +G+     P  LRS  V
Sbjct:  474 FNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGL----VPLHLRSPQV 575
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.694e-7
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITF----------VAPPP 118
            ++  + S+TP+ Y  YR+F+I+ YR +P    T T   ++L  DV  + +V  FLE WGLI +          + PPP
Sbjct:  450 FNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPP 527
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SMRC2_MOUSE (SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 2.104e-7
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITF----------VAPPP 118
            ++  + S+TP+ Y  YR+F+I+ YR +P    T T   ++L  DV  + +V  FLE WGLI +          + PPP
Sbjct:  450 FNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPP 527
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.329e-7
Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLID--DVTLLHKVFRFLEAWGLITFVA 115
            +S  S + TP+ Y E+R+ I++KY E+P  + T ++  + L+D  D+    +VFRFL+ WG+I + A
Sbjct:  202 FSGKSPNHTPESYMEFRNAIVSKYVENPEKTLTISDC-QGLVDGVDIEDFARVFRFLDHWGIINYCA 267
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A2P5YIC7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA05219 PE=4 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.972e-101
Identity = 206/236 (87.29%), Postives = 211/236 (89.41%), Query Frame = 0 
Query:   51 YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGNVGTSVGGSVGFSVGGSVASIGGSVGSLIGVPVGVNVIGGNVIGGNVIGGIGGKNGDLIGGNGGNNDNVIGDTSISDTC 286
            +  SSISRTPKFYKEYRDFIINKYREDPSH FTFTEIHKSLIDDVTLLHKVF FLEAWGLITFVAPPPP KGSENDDRVRVKN+TSNGVWVIATPNSLRSLSVEVVKGKNS DGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSG+    +GNVGTS         G    S+GGSVGS IGVPVGVNVIG NVIGGNVIGGIGGKNGDLIGGNGGNNDNVIGDTSISDTC
Sbjct:    9 FEGSSISRTPKFYKEYRDFIINKYREDPSHRFTFTEIHKSLIDDVTLLHKVFCFLEAWGLITFVAPPPPRKGSENDDRVRVKNETSNGVWVIATPNSLRSLSVEVVKGKNSSDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGF--GIQGNVGTS-------VGGSVGFSVGGSVGSSIGVPVGVNVIGANVIGGNVIGGIGGKNGDLIGGNGGNNDNVIGDTSISDTC 235
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A2P5Y2E8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA10870 PE=4 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.664e-94
Identity = 149/189 (78.84%), Postives = 155/189 (82.01%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS----------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYS           SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSKRQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 196
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A0B0Q074_GOSAR (SWI/SNF complex subunit SWI3A-like protein OS=Gossypium arboreum OX=29729 GN=F383_13688 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.203e-93
Identity = 150/200 (75.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 207
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A1U8MM13_GOSHI (SWI/SNF complex subunit SWI3A-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107939099 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.251e-93
Identity = 150/200 (75.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 207
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A1U8MM11_GOSHI (SWI/SNF complex subunit SWI3A-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107939099 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.296e-93
Identity = 150/200 (75.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKKGN 208
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNCDSGYYEYKK N
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCDSGYYEYKKDN 207
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A1U8K4V8_GOSHI (SWI/SNF complex subunit SWI3A-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107913439 PE=4 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.607e-91
Identity = 148/198 (74.75%), Postives = 154/198 (77.78%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGYYEYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYYEYKK 205
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A1U8K4P2_GOSHI (SWI/SNF complex subunit SWI3A-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107913439 PE=4 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 1.746e-91
Identity = 148/198 (74.75%), Postives = 154/198 (77.78%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSGDGVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGYYEYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGDGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYYEYKK 205
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A0D2T9P3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G207800 PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 2.168e-90
Identity = 146/198 (73.74%), Postives = 153/198 (77.27%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSG GVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGY+EYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGGGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYHEYKK 205
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A0D2U6N9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G207800 PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 2.619e-90
Identity = 146/198 (73.74%), Postives = 153/198 (77.27%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSG GVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGY+EYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGGGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYHEYKK 205
[Close]
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Match: A0A0D2RJ58_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G207800 PE=4 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 2.817e-90
Identity = 146/198 (73.74%), Postives = 153/198 (77.27%), Query Frame = 0 
Query:   30 EPTSDSNRPEKPELDLSTILSYSS---------------------SSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHKVFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRSLSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSGYYEYKK 206
            +P  DSNRPE+PELDL TI SYSS                     SSISRTPK YKEYRDFIINKYREDPS   TFTEI KSLI DVTLLHKVFRFLE WGLI F+APPPP +GSENDDRVRV+N   NGV V+ATPNSLR LS  VVKGKNSG GVEE GVKLPPLASYSDVFGDLKRLH GSCGDNC SGY+EYKK
Sbjct:    8 DPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHEGSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGGGVEESGVKLPPLASYSDVFGDLKRLHCGSCGDNCHSGYHEYKK 205
The following BLAST results are available for this feature:
BLAST of EVM_prediction_Ga03G2028 vs. NCBI nr
Analysis Date: 2019-03-07 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1347719021|gb|PPS15345.1|8.299e-10187.29hypothetical protein GOBAR_AA05219 [Gossypium barb... [more]
gi|1347712795|gb|PPS09774.1|1.981e-9478.84hypothetical protein GOBAR_AA10870 [Gossypium barb... [more]
gi|1050628688|ref|XP_017637260.1|2.623e-9375.00PREDICTED: SWI/SNF complex subunit SWI3A isoform X... [more]
gi|1028968688|ref|XP_016727867.1|2.680e-9375.00PREDICTED: SWI/SNF complex subunit SWI3A-like isof... [more]
gi|1028968686|ref|XP_016727866.1|2.733e-9375.00PREDICTED: SWI/SNF complex subunit SWI3A-like isof... [more]
gi|1050628686|ref|XP_017637259.1|3.427e-9375.00PREDICTED: SWI/SNF complex subunit SWI3A isoform X... [more]
gi|1029074549|ref|XP_016697502.1|1.913e-9174.75PREDICTED: SWI/SNF complex subunit SWI3A-like isof... [more]
gi|1029074547|ref|XP_016697501.1|2.079e-9174.75PREDICTED: SWI/SNF complex subunit SWI3A-like isof... [more]
gi|763784155|gb|KJB51226.1|2.581e-9073.74hypothetical protein B456_008G207800 [Gossypium ra... [more]
gi|763784153|gb|KJB51224.1|3.118e-9073.74hypothetical protein B456_008G207800 [Gossypium ra... [more]
back to top
BLAST of EVM_prediction_Ga03G2028 vs. TAIR10
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs arabidopsis TAIR10)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G47620.18.077e-4046.95| Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose n... [more]
AT2G33610.11.898e-1138.46| Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3... [more]
AT1G21700.12.402e-837.31| Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose n... [more]
back to top
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy Swiss-Prot
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
SWI3A_ARATH1.120e-3846.95SWI/SNF complex subunit SWI3A OS=Arabidopsis thali... [more]
SWI3B_ARATH2.630e-1038.46SWI/SNF complex subunit SWI3B OS=Arabidopsis thali... [more]
SSR2_SCHPO6.563e-1045.00SWI/SNF and RSC complexes subunit ssr2 OS=Schizosa... [more]
SSR1_SCHPO1.682e-945.90SWI/SNF and RSC complexes subunit ssr1 OS=Schizosa... [more]
RSC8_YEAST1.027e-841.79Chromatin structure-remodeling complex protein RSC... [more]
SMRC1_HUMAN5.091e-832.08SWI/SNF complex subunit SMARCC1 OS=Homo sapiens OX... [more]
SMRC1_MOUSE6.443e-832.08SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX... [more]
SMRC2_HUMAN1.694e-734.62SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX... [more]
SMRC2_MOUSE2.104e-734.62SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX... [more]
SWI3C_ARATH3.329e-737.31SWI/SNF complex subunit SWI3C OS=Arabidopsis thali... [more]
back to top
BLAST of EVM_prediction_Ga03G2028 vs. ExPASy TrEMBL
Analysis Date: 2019-03-08 (BLASTP of CRI v1.0 Gossypium arboreum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2P5YIC7_GOSBA6.972e-10187.29Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5Y2E8_GOSBA1.664e-9478.84Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0B0Q074_GOSAR2.203e-9375.00SWI/SNF complex subunit SWI3A-like protein OS=Goss... [more]
A0A1U8MM13_GOSHI2.251e-9375.00SWI/SNF complex subunit SWI3A-like isoform X2 OS=G... [more]
A0A1U8MM11_GOSHI2.296e-9375.00SWI/SNF complex subunit SWI3A-like isoform X1 OS=G... [more]
A0A1U8K4V8_GOSHI1.607e-9174.75SWI/SNF complex subunit SWI3A-like isoform X2 OS=G... [more]
A0A1U8K4P2_GOSHI1.746e-9174.75SWI/SNF complex subunit SWI3A-like isoform X1 OS=G... [more]
A0A0D2T9P3_GOSRA2.168e-9073.74Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0D2U6N9_GOSRA2.619e-9073.74Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0D2RJ58_GOSRA2.817e-9073.74Uncharacterized protein OS=Gossypium raimondii OX=... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for CRI v1.0 Gossypium arboreum proteins
Date Performed: 2019-03-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007526SWIRM domainPFAMPF04433SWIRMcoord: 52..113
e-value: 8.5E-15
score: 54.9
IPR007526SWIRM domainPROSITEPS50934SWIRMcoord: 18..122
score: 15.618
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 42..116
e-value: 1.7E-17
score: 65.2
NoneNo IPR availablePANTHERPTHR12802:SF41BRAHMA ASSOCIATED PROTEIN 155 KDAcoord: 54..151
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 54..151
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 53..113

Sequences
The following sequences are available for this feature:

mRNA sequence

>evm.model.Ga03G2028_CRI-A2_v1.0.a1 ID=evm.model.Ga03G2028_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga03G2028; organism=Gossypium arboreum; type=mRNA; length=861bp
ATGTTGTTTCTTTCTTTCTTCTTCTCTCTTTCTCTATTCCCTATTGTTAT
AGTAAAACACACACACACACCACCACCATTTTCATCAGAGCCCACATCAG
ATTCAAATCGACCTGAAAAACCAGAGCTCGACCTTTCCACTATACTGAGC
TACTCTAGTAGCTCAATCTCAAGAACCCCTAAATTCTACAAGGAGTACAG
GGATTTCATCATCAATAAATACAGGGAAGACCCTTCTCACAGCTTCACTT
TCACCGAAATTCACAAATCCCTCATCGATGACGTCACTTTACTCCACAAG
GTCTTTCGCTTCTTGGAAGCTTGGGGTTTGATTACTTTCGTCGCCCCGCC
TCCACCCTGTAAAGGTTCTGAGAACGATGATAGGGTTCGGGTAAAAAACA
AGACCTCGAATGGGGTTTGGGTCATCGCTACTCCTAATTCATTACGATCG
CTTTCGGTGGAGGTTGTTAAGGGTAAGAACAGTGGTGATGGGGTTGAAGA
GATTGGAGTCAAGTTGCCTCCCCTGGCTTCATATTCTGATGTTTTTGGTG
ATTTGAAAAGACTACATTATGGTAGTTGCGGAGATAATTGTGATTCTGGG
TACTATGAATATAAAAAGGGCAATGTTGGTACCTCAGTTGGTGGATCTGT
TGGTTTCTCGGTTGGTGGATCTGTGGCATCGATTGGTGGATCTGTTGGTT
CCTTGATTGGTGTACCTGTTGGTGTCAATGTTATTGGTGGCAATGTCATT
GGTGGCAATGTTATTGGTGGTATTGGTGGCAAGAACGGAGATCTTATTGG
TGGCAATGGTGGGAATAACGACAATGTTATTGGTGACACTTCAATTAGTG
ACACGTGCTGA
back to top

protein sequence of evm.model.Ga03G2028_CRI-A2_v1.0.a1

>evm.model.Ga03G2028_CRI-A2_v1.0.a1 ID=evm.model.Ga03G2028_CRI-A2_v1.0.a1; Name=evm.model.Ga03G2028_CRI-A2_v1.0.a1; organism=Gossypium arboreum; type=polypeptide; length=286bp
MLFLSFFFSLSLFPIVIVKHTHTPPPFSSEPTSDSNRPEKPELDLSTILS
YSSSSISRTPKFYKEYRDFIINKYREDPSHSFTFTEIHKSLIDDVTLLHK
VFRFLEAWGLITFVAPPPPCKGSENDDRVRVKNKTSNGVWVIATPNSLRS
LSVEVVKGKNSGDGVEEIGVKLPPLASYSDVFGDLKRLHYGSCGDNCDSG
YYEYKKGNVGTSVGGSVGFSVGGSVASIGGSVGSLIGVPVGVNVIGGNVI
GGNVIGGIGGKNGDLIGGNGGNNDNVIGDTSISDTC
back to top

mRNA from alignment at Chr03_CRI-A2_v1.0.a1:126182782..126184710-

Legend: exonCDSpolypeptidegenetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
>evm.model.Ga03G2028_CRI-A2_v1.0.a1 ID=evm.model.Ga03G2028_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga03G2028; organism=Gossypium arboreum; type=mRNA; length=1929bp; location=Sequence derived from: Chr03_CRI-A2_v1.0.a1:126182782..126184710- (Gossypium arboreum
ATGTTGTTTCTTTCTTTCTTCTTCTCTCTTTCTCTATTCCCTATTGTTAT
AGTAAAACACACACACACACCACCACCATTTTCATCAGAGCCCACATCAG
ATTCAAATCGACCTGAAAAACCAGAGCTCGACCTTTCCACTATACTGAGC
TACTCTAGTAAGTTCCTTCTTTTTAATTTATTAATCAATATTCCCCTTCT
CCAAAACCCTAATGAAAAATCTCATTTCTTTCTTCTTCTTCTTCTTCTTC
TTCTTAGGCTGGTTTGCTTGGAACAATATTCACGAAATATAAAGGCAAGC
ATTGAAAGAATTCTTTGAAGGTAGCTCAATCTCAAGAACCCCTAAATTCT
ACAAGGAGTACAGGGATTTCATCATCAATAAATACAGGGAAGACCCTTCT
CACAGCTTCACTTTCACCGAAATTCACAAATCCCTCATCGATGACGTCAC
TTTACTCCACAAGGTCTTTCGCTTCTTGGAAGCTTGGGGTTTGATTACTT
TCGTCGCCCCGCCTCCACCCTGTAAAGGTTCTGAGAACGATGATAGGGTT
CGGGTAAAAAACAAGACCTCGAATGGGGTTTGGGTCATCGCTACTCCTAA
TTCATTACGATCGCTTTCGGTGGAGGTTGTTAAGGGTAAGAACAGTGGTG
ATGGGGTTGAAGAGATTGGAGTCAAGTTGCCTCCCCTGGCTTCATATTCT
GATGTTTTTGGTGATTTGAAAAGACTACATTATGGTAGTTGCGGAGATAA
TTGTGATTCTGGGTACTATGAATATAAAAAGGGTATTTCATTTTTTAAAA
TTTGAAAGATTCTTTTTGCATTTAATTCTTTTTGGAATTATTTTTATCTA
TTAATTTTTGTCATTAGATTAAAACATAAATATATTCAGTTGAAATGCGT
ATTTGAGAGAGTGAAATACAGGTGTGGGCTCTGATGAAAATGGTGGTGGG
TGGGTGTGTTTTTACTGTAATAGTAGGAAGAGAGAAAGAGAGAAGAAGAA
AGAAGGAAACAAAATGAAAAAAAAAAATTGTTAAACAATTTTTTAGATGA
TGTCATCGTGCTTATGTGGTATGCCACATAGACTTATTTCATTGATCGGC
GCTTGATTGACGGTTAACTCACATTTATTGTTAAAATTAGGCTAATTTCT
GAAAAAAATTATAATGTTGAGGGTGTCAATAAAAAAAAGGTCAAAGGCAC
AAAACCAAAAGTCCCCAAACGTTGAGGATTTTTTTGCAATTATGCCTAAA
ATAATCACATCATTCATTGGCAAGTGATTATGTTATGTTTTTTTTTTCTT
AAGTATAACTATGTTGGAGTTGATAGCATCAATTATAATACCTTTATAAA
TGATTGTATAACATTTAATCATGTTTATATTTTTGCATATATAATTTTAA
TAATTTAATAACTTAAAAAAAACACCACACTTTATTATATATGTAAAATG
TAAATAGAAACTACATTCTTATTTCATGAAATAACATCATAGAGAATGTG
ATGACAGAGTTCATTCTCAGTAATATATGTGATACTAATTAGGAATCAAA
TTGTCTTCAATAGCTGGATGGAGGTGGAGATGGAGACATGAAAGGAATGG
AAGGCAAGCTATTGCTGGGAACTTGTGGAAGAACAGTGATAGGCTTAGGC
TAAGATGGTGGGATTGTTGGTAGCTTTGGGATTCAAGGCAATGTTGGTAC
CTCAGTTGGTGGATCTGTTGGTTTCTCGGTTGGTGGATCTGTGGCATCGA
TTGGTGGATCTGTTGGTTCCTTGATTGGTGTACCTGTTGGTGTCAATGTT
ATTGGTGGCAATGTCATTGGTGGCAATGTTATTGGTGGTATTGGTGGCAA
GAACGGAGATCTTATTGGTGGCAATGGTGGGAATAACGACAATGTTATTG
GTGACACTTCAATTAGTGACACGTGCTGA
back to top

Coding sequence (CDS) from alignment at Chr03_CRI-A2_v1.0.a1:126182782..126184710-

>evm.model.Ga03G2028_CRI-A2_v1.0.a1 ID=evm.model.Ga03G2028_CRI-A2_v1.0.a1; Name=EVM_prediction_Ga03G2028; organism=Gossypium arboreum; type=CDS; length=861bp; location=Sequence derived from: Chr03_CRI-A2_v1.0.a1:126182782..126184710- (Gossypium arboreum
ATGTTGTTTCTTTCTTTCTTCTTCTCTCTTTCTCTATTCCCTATTGTTAT
AGTAAAACACACACACACACCACCACCATTTTCATCAGAGCCCACATCAG
ATTCAAATCGACCTGAAAAACCAGAGCTCGACCTTTCCACTATACTGAGC
TACTCTAGTAGCTCAATCTCAAGAACCCCTAAATTCTACAAGGAGTACAG
GGATTTCATCATCAATAAATACAGGGAAGACCCTTCTCACAGCTTCACTT
TCACCGAAATTCACAAATCCCTCATCGATGACGTCACTTTACTCCACAAG
GTCTTTCGCTTCTTGGAAGCTTGGGGTTTGATTACTTTCGTCGCCCCGCC
TCCACCCTGTAAAGGTTCTGAGAACGATGATAGGGTTCGGGTAAAAAACA
AGACCTCGAATGGGGTTTGGGTCATCGCTACTCCTAATTCATTACGATCG
CTTTCGGTGGAGGTTGTTAAGGGTAAGAACAGTGGTGATGGGGTTGAAGA
GATTGGAGTCAAGTTGCCTCCCCTGGCTTCATATTCTGATGTTTTTGGTG
ATTTGAAAAGACTACATTATGGTAGTTGCGGAGATAATTGTGATTCTGGG
TACTATGAATATAAAAAGGGCAATGTTGGTACCTCAGTTGGTGGATCTGT
TGGTTTCTCGGTTGGTGGATCTGTGGCATCGATTGGTGGATCTGTTGGTT
CCTTGATTGGTGTACCTGTTGGTGTCAATGTTATTGGTGGCAATGTCATT
GGTGGCAATGTTATTGGTGGTATTGGTGGCAAGAACGGAGATCTTATTGG
TGGCAATGGTGGGAATAACGACAATGTTATTGGTGACACTTCAATTAGTG
ACACGTGCTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007526SWIRM
IPR036388WH-like_DNA-bd_sf
IPR009057Homeodomain-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding