HAU2605, HAU2605 (genetic_marker) gossypium spp

Marker Overview
NameHAU2605
Genbank IDEX171805
TypeSSR
SpeciesGossypium spp.
Source SequenceEX171805.1
Source TypeEST
Repeat Motif(CTT)6
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU2605_F: TGACGATCATACCCGCCCCA
Primer 2HAU2605_R: GGAAACAGCAGGGACACACCA
Product Length270
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEX171805
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A03chromosomeA03:3725781..3726050 +
D03chromosomeD03:48676675..48676956 -
CM018204.1chromosomeCM018204.1:3867799..3868069 +
CM018217.1chromosomeCM018217.1:48957079..48957373 -
KI_2_4chromosomeKI_2_4:38247696..38247969 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:108318628..108318903 +
D10_02chromosomeD10_02:46929038..46929323 -
CM016615.1chromosomeCM016615.1:107590294..107590572 -
At_chr5chromosomeAt_chr5:2442112..2442381 +
scaffold154.1supercontigscaffold154.1:1231626..1231907 -
A03chromosomeA03:2925623..2925892 +
D03chromosomeD03:42510091..42510372 -
Ghir_A03chromosomeGhir_A03:4671883..4672152 +
Ghir_D03chromosomeGhir_D03:48482890..48483171 -
A03chromosomeA03:4212598..4212867 +
D03chromosomeD03:49807491..49807772 -
A03chromosomeA03:4492591..4492860 +
D03chromosomeD03:49462031..49462312 -
A03chromosomeA03:3914053..3914322 +
D03chromosomeD03:48735190..48735471 -
At03chromosomeAt03:3437843..3438112 +
scaffold27358supercontigscaffold27358:17236..17830 +
scaffold1001supercontigscaffold1001:35470..35739 +
Gbar_A03chromosomeGbar_A03:3897007..3897276 +
Gbar_D03chromosomeGbar_D03:47353494..47353785 -
A03chromosomeA03:3980592..3980861 +
D03chromosomeD03:49741485..49741776 -
CM017612.1chromosomeCM017612.1:4192820..4193089 +
CM017625.1chromosomeCM017625.1:48183442..48183726 -
CM017638.1chromosomeCM017638.1:4565355..4565624 +
CM017651.1chromosomeCM017651.1:52301602..52301877 -
CM017690.1chromosomeCM017690.1:4172605..4172874 +
CM017703.1chromosomeCM017703.1:49829043..49829324 -
A03chromosomeA03:4564703..4564972 +
D03chromosomeD03:50735349..50735630 -
Chr02chromosomeChr02:3682731..3683006 +
Chr01chromosomeChr01:114505308..114505583 -
Chr02chromosomeChr02:44639424..44639705 -
B_04chromosomeB_04:4384975..4385248 +
Chr03chromosomeChr03:46243090..46243368 -
Chr03chromosomeChr03:48187612..48187891 -
Chr03chromosomeChr03:27125310..27125590 -
Chr03chromosomeChr03:23205045..23205317 -
Chr03chromosomeChr03:28950776..28951053 -
E02chromosomeE02:82900069..82900343 -
F02chromosomeF02:72517406..72517680 -
Chr02chromosomeChr02:5501771..5502048 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
EX171805.1EX171805.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch17_Dt.03N/A32.8HAU2605View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch17_Dt.03N/A55.3HAU2605View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch17_Dt.03N/A85.48HAU2605View
Sequence
>HAU2605 ID=HAU2605; Name=HAU2605; organism=Gossypium spp.; type=genetic_marker; length=270bp
TGACGATCATACCCGCCCCAACAACAATAACTCCCACTCTGCTTTCTCCA
AGGTTTCTACTTCTTCTTCTTCTTCTTCTCCCGCTTGTAATTAACAGTCA
ATGCTTCAATTTGTTGGACTAGGTTTGGGCAGCTATAGAATCAGGATTCT
GGGCATCTCTTGACATGGCAAGTGGTCGTTACTTGTGGAGGCATCTGGTT
TCCTCTAACTCCAAGCCTTCCTCTTGATTCTGCAAAAAAAACCATTCTTT
GGTGTGTCCCTGCTGTTTCC