DC40229, DC40229 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40229
Genbank IDGQ394680
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1703
Source Typegenomic
Primer 1DC40229_F: ACTTTTTCCAATTTGATCTCTC
Primer 2DC40229_R: CGTGTTCAAGTGTGCTGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394680
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:61732332..61732518 +
A08chromosomeA08:115563704..115563910 +
CM018222.1chromosomeCM018222.1:58120664..58120850 +
CM018209.1chromosomeCM018209.1:110850667..110850873 +
D5_08chromosomeD5_08:54331118..54331303 +
D10_08chromosomeD10_08:6847568..6847753 -
scaffold1048.1supercontigscaffold1048.1:536024..536210 +
D08chromosomeD08:58434547..58434733 +
scaffold5391supercontigscaffold5391:6396..6602 -
scaffold5391supercontigscaffold5391:4472..4678 -
Ghir_D08chromosomeGhir_D08:60992589..60992775 +
D08chromosomeD08:61536294..61536480 +
A08chromosomeA08:116986624..116986830 +
D08chromosomeD08:60828986..60829172 +
A08chromosomeA08:116951383..116951589 +
D08chromosomeD08:58101531..58101717 +
Dt08chromosomeDt08:60821442..60821628 +
At08chromosomeAt08:100444624..100444830 +
scaffold17533supercontigscaffold17533:4136..4322 +
scaffold16236supercontigscaffold16236:77748..77954 +
Gbar_D08chromosomeGbar_D08:58167813..58167999 +
Gbar_A08chromosomeGbar_A08:111544732..111544938 +
D08chromosomeD08:60070129..60070315 +
A08chromosomeA08:112601610..112601816 +
CM017630.1chromosomeCM017630.1:59660336..59660522 +
CM017617.1chromosomeCM017617.1:111036493..111036699 +
CM017656.1chromosomeCM017656.1:61861650..61861835 +
CM017643.1chromosomeCM017643.1:120501912..120502118 +
CM017708.1chromosomeCM017708.1:58443457..58443643 +
CM017695.1chromosomeCM017695.1:111655699..111655905 +
D08chromosomeD08:61595091..61595277 +
A08chromosomeA08:118846379..118846585 +
Chr08chromosomeChr08:55216408..55216594 +
B_08chromosomeB_08:95575017..95575230 +
Chr04chromosomeChr04:56643800..56643984 +
chr04chromosomechr04:42646229..42646539 +
Chr_04chromosomeChr_04:39216564..39216749 +
Chr04chromosomeChr04:59051899..59052085 +
Chr04chromosomeChr04:37317299..37317485 +
Chr04chromosomeChr04:31409565..31409750 +
Chr04chromosomeChr04:37968595..37968781 +
Chr08chromosomeChr08:13920639..13920847 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1703MONCS1703Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch08_At.08N/A59.4MON_DC40229aView
2CCRI-35 x Yumian-1, RIL (2015)AD_ch24_Dt.08N/A22.8DC40229View
3LMY22 x LY343, RIL (2020)D08N/A123.32DC40229View
4Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A33.2DC40229aView
5Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A8.5DC40229bView
6CCRI-35 x Yumian-1, RIL (2017)AD_ch24_Dt.08N/A86.12DC40229View
Sequence
>DC40229 ID=DC40229; Name=DC40229; organism=Gossypium hirsutum; type=genetic_marker; length=187bp
ACTTTTTCCAATTTGATCTCTCTACTTTTGAGTCTAATATTAAATGCATA
ATATACGTAATTTATGGTTAAAATTTATTGTATTTTGAACTTCTATATAT
GCAAAATATGATTTTTAATTTTTATTTTTTTATACAATGCCTAACCCTTA
AATAAGAGGATAACGCGCTTCAGCACACTTGAACACG