Download TM-1 (G. hirsutum, AD1) Genome Data

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  Sequencing Institute and Genome
Assembly- by genome sequencing project BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1new    
FASTA Files              
     * Chromosomes + Scaffolds 26+9128 26+288,273 26+5,329 26+2,164 26+12,072    
GFF3 | EXCEL | TXT  Files              
     * Chromosomes + Scaffolds 26+9128            
Annotation - by genome sequencing project BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1new    
FASTA Files              
    * Predicted coding sequences 76,943 70,478 87,800 115,835 72,761      
    * Predicted protein sequences 76,943 70,478 87,800 115,835 72,761    
    * Predicted gene sequences     66,577        
GFF3 | EXCEL | TXT  Files              
    * Predicted gene alignments FTP FTP FTP FTP FTP    
    * Predicted gene with exon alignments     FTP        
Annotation - by CottonGen Team BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1new    
GFF3 | EXCEL | TXT  files              
    * Functional              
          - GO assignments from InterProScan FTP FTP FTP FTP FTP    
          - IPR assignments from InterProScan FTP FTP FTP FTP FTP    
          - Genes in KEGG Pathways FTP FTP FTP FTP FTP    
          - Genes mapped to KEGG orthologs FTP FTP FTP FTP FTP    
    * Marker Alignments updated 7/19              
          - CottonGen RFLP-RAD markers (11/18) FTP FTP FTP FTP FTP    
          - CottonGen SSR markers (11/18) FTP FTP FTP FTP FTP    
          - CottonGen SNP markers (11/18) FTP FTP FTP FTP FTP    
          - CottonGen InDel markers (11/18) FTP FTP FTP   FTP    
    * Protein Homologies updated 7/19              
          - Arabidopsis thaliana Araport11 FTP FTP FTP FTP(tair10) FTP(tair10)    
          - NCBI nr (download m/yy) FTP(1/19) FTP(1/19) FTP(1/19) FTP(4/18) FTP(1/19)    
          - Uniprot swissprot (download m/yy) FTP(1/19) FTP(1/19) FTP(1/19) FTP(5/18) FTP(1/19)    
          - Uniprot trembl (download m/yy) FTP(1/19) FTP(1/19) FTP(1/19) FTP(5/18) FTP(1/19)    
    * Unigene & Transcript Alignments               
          - G. arboreum CottonGen RefTrans v1 FTP FTP FTP FTP FTP    
          - G. barbadense CottonGen RefTrans v1 FTP FTP FTP FTP FTP    
          - G. hirsutum CottonGen RefTrans v1 FTP FTP FTP FTP FTP    
          - G. raimondii CottonGen RefTrans v1 FTP FTP FTP FTP FTP