Download Diploid Genome Data

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  Sequencing Institute and Genome
Assembly- by genome sequencing project D5_BGI D5_JGI A2_BGI A2_CRI      
FASTA Files              
     * Chromosomes + Scaffolds 13+4434 13+1020 13+75,581 13+4,503      
GFF3 | EXCEL | TXT  Files              
     * Chromosomes + Scaffolds 13+4434 13+1020 13+75,581        
Annotation - by genome sequencing project D5_BGI D5_JGI A2_BGI A2_CRI      
FASTA Files              
    * Predicted coding sequences 40,976 77,267 40,134 40,960        
    * Predicted protein sequences 40,976 77,267 40,134 40,960      
    * Predicted gene sequences   37,505          
GFF3 | EXCEL | TXT  Files              
    * Predicted gene alignments FTP FTP FTP FTP      
    * Predicted gene with exon alignments   FTP          
Annotation - by CottonGen Team D5_BGI D5_JGI A2_BGI A2_CRI      
GFF3 | EXCEL | TXT  files              
    * Functional              
          - GO assignments from InterProScan FTP FTP FTP FTP      
          - IPR assignments from InterProScan FTP FTP FTP FTP      
          - Genes in KEGG Pathways FTP FTP FTP FTP      
          - Genes mapped to KEGG orthologs FTP FTP FTP FTP      
    * Marker Alignments              
          - CottonGen RFLP-RAD markers FTP FTP FTP FTP      
          - CottonGen SSR markers FTP FTP FTP FTP      
          - CottonGen SNP markers FTP FTP FTP FTP      
          - CottonGen InDel markers FTP FTP FTP FTP      
    * Protein Homologies              
          - Arabidopsis thaliana TAIR10 FTP FTP FTP FTP      
          - NCBI nr-all (download date) FTP(10/12) FTP FTP FTP(2/19)      
          - Uniprot swissprot-all (download m/yy) FTP(10/12) FTP FTP FTP(2/19)      
          - Uniprot trembl-all (download m/yy) FTP(10/12) FTP FTP FTP(2/19)      
    * Unigene & Transcript Alignments               
          - G. arboreum CottonGen RefTrans v1       FTP      
          - G. barbadense CottonGen RefTrans v1       FTP      
          - G. hirsutum CottonGen RefTrans v1       FTP      
          - G. raimondii CottonGen RefTrans v1       FTP