Other D-genomes

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  Sequencing Institute and Genome
Assembly- by sequencing project D1-35 D1-5 D21-6 D22 D3D-27 D3D-8 D3K-57 D4-185 D6-5 D7-157 D8-8 D9-4 D10-3 D11-1
FASTA Files                            
 * Chromosomes + Scaffolds 13 13+11 13+1,349 13+2,572 13+314,782 13+14 13+316,806 13+382,310 13+344,886 13+380,345 13+290,385 13+470,369 13 13+332,944
Annotation - by sequencing project D1-35 D1-5 D21-6 D22 D3D-27 D3D-8 D3K-57 D4-185 D6-5 D7-157 D8-8 D9-4 D10-3 D11-1
FASTA Files                            
 * Predicted coding sequences 31,520 41,316 25,464 31,153 34,870 41,471 34,902 29,559 24,986 30,295 32,895 28,512 38,871 35,775
 * Predicted protein sequences 31,520 41,316 25,464 31,153 34,870 41,471 34,902 29,559 24,986 30,295 32,895 28,512 38,871 35,775
 * Predicted gene sequences                         39,692  
GFF3 | EXCEL | TXT                            
 * Predicted gene alignments                            
 * Predicted gene with exon alignments FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP
Annotation - by CottonGen Team D1-35 D1-5 D21-6 D22 D3D-27 D3D-8 D3K-57 D4-185 D6-5 D7-157 D8-8 D9-4 D10-3 D11-1
GFF3 | EXCEL | TXT  files                            
* Functional                            
- GO assignments from InterProScan FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- IPR assignments from InterProScan FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- Genes in KEGG Pathways FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- Genes mapped to KEGG orthologs FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
* Marker Alignments                            
- CottonGen RFLP-RAD markers (v. 11/18) FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- CottonGen SSR markers (v.11/18) FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- CottonGen SNP markers (v. 11/18) FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- CottonGen InDel markers (v.11/18) FTP FTP   FTP   FTP     FTP FTP FTP FTP FTP FTP
* Protein Homologies                          
- Arabidopsis thaliana Araport11 FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- NCBI nr-all (v. m/yy = 5/18) FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- Uniprot swissprot-all (v.1/19) FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- Uniprot trembl-all (v.1/19) FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
* Unigene & Transcript Alignments                             
- G. arboreum CottonGen RefTrans v1 FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- G. barbadense CottonGen RefTrans v1 FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- G. hirsutum CottonGen RefTrans v1 FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP
- G. raimondii CottonGen RefTrans v1 FTP FTP FTP FTP   FTP   FTP FTP FTP FTP FTP FTP FTP