g.arboreum_cottongen_reftransV1_0018368, g.arboreum_cottongen_reftransV1_0018368 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0018368
Unique Name	g.arboreum_cottongen_reftransV1_0018368
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr5	chromosome	g.arboreum_cottongen_reftransV1_0018368:1..384 . Chr5:31147641..31148024 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A068U7T5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_13 OS=Coffea canephora GN=GSCOC_T00018565001 PE=4 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.603e-49
Identity = 77/112 (68.75%), Postives = 93/112 (83.04%), Query Frame = -2

Query:   48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383
            PGCEPT+STYEI+VRMFCNE+R D+A +VW+QMK KG LPGMHM+S LI SL H++KL +AC+YFQ+MLD GIRPP  MF NLKQALLDEGK+D  L L +K+ KLR T +V
Sbjct:  405 PGCEPTISTYEIMVRMFCNEERTDMALRVWNQMKAKGFLPGMHMFSSLINSLSHENKLEDACRYFQQMLDMGIRPPTPMFKNLKQALLDEGKEDTVLTLAKKLEKLRVTQIV 516

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: R0GFP7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10022011mg PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.233e-48
Identity = 75/111 (67.57%), Postives = 94/111 (84.68%), Query Frame = -2

Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
             CEPTV TYEI+VRMFCNE+R+D+A ++WD+MK KGVLPGMHM+S LIT+LCH++KL EAC+YF EMLD GIRPP +MFS LKQ LLDEG+KD+ + L  K+++LR T LV
Sbjct:  401 SCEPTVGTYEIMVRMFCNEERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGQMFSRLKQTLLDEGRKDKVVELAVKMDRLRKTQLV 511

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: K7LLK9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.094e-47
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = -2

Query:   45 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVV 380
            GCEP+VSTYEI+VRMFCNE+ +D+A  VWD+MK KG+LPGMHM+S L+ +LCH+ KL EACKYFQEMLD GIRPPAKMFS LK+AL+D G +  A++ T KI+KLR +PLV 
Sbjct:  396 GCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHVAMHFTLKIDKLRKSPLVA 507

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: D7KYI3_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476238 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 3.475e-47
Identity = 74/111 (66.67%), Postives = 94/111 (84.68%), Query Frame = -2

Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
             CEPTVSTYEI+VRMFCN++R+D+A ++WD+MK KGVLPGMHM+S LIT+LCH++KL EAC+YF EMLD GIRPP  +FS LKQ LLDEG+KD+  +L  K+++LR T LV
Sbjct:  401 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRLKQTLLDEGRKDKVADLAVKMDRLRKTQLV 511

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: V7BAW1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G037500g PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.688e-47
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = -2

Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
            GCEP+VSTYEI+VRMFCNE R+D+A  VWD+MK KG+LPG+HM+S LI SLCH++KL EACKYFQEMLD GIRPPAKMFS LK+AL+D   +  A++   KI+KLR +PLV
Sbjct:  412 GCEPSVSTYEIMVRMFCNEVRLDMAMAVWDEMKEKGILPGVHMFSTLICSLCHENKLNEACKYFQEMLDVGIRPPAKMFSTLKEALVDARMEHVAMHFAMKIDKLRKSPLV 522

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: V4NJL2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000687mg PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.308e-46
Identity = 71/111 (63.96%), Postives = 95/111 (85.59%), Query Frame = -2

Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
             CEPTVSTYEI+VRMFCN++R+D+A ++WD+M+ KGVLPGMHM+S LIT++CH++KL EAC+YF EMLD GI+ P  MFS LKQALLDEG+KD+ ++L  K+++LR T L+
Sbjct:  196 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMRGKGVLPGMHMFSSLITAMCHENKLDEACEYFNEMLDVGIKAPGHMFSCLKQALLDEGRKDKVVDLAVKMDRLRKTQLL 306

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: K4BX07_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g008330.1 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.846e-46
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = -2

Query:   48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383
            PGCEPTVSTYEI+VRMFCNE+R D+A +VWD+MK  GVLPGMH +S LI S C + KL +AC+YFQEMLD G+RPP  +F NLK+ALLDEGK+D    L RK+ KLR +PLV
Sbjct:  409 PGCEPTVSTYEIMVRMFCNEERTDMALKVWDKMKANGVLPGMHSFSTLINSFCRESKLDDACRYFQEMLDMGMRPPIPLFDNLKRALLDEGKEDIVKALWRKLEKLRKSPLV 520

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: B9SYJ4_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1288600 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.210e-46
Identity = 76/110 (69.09%), Postives = 93/110 (84.55%), Query Frame = -2

Query:   48 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 377
            CEPTVSTY+IIVRMFCN D+V+ A +VWD+MK KGV PGMHM+S LI SLCH++KL  ACKYFQEMLD GIRPPA +FS+LKQAL+++G+KD  + L +KI+KLR TP V
Sbjct:  423 CEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVVLLAQKIDKLRKTPYV 532

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: M1D082_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030554 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.337e-46
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = -2

Query:   48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383
            PGCEPTVSTYEI+VRMFCNEDR D+A +VWD+MK  GVLPGMH +S LI S C ++KL +AC+YFQEMLD G+RPP  +F NLK+ALLDEGK+D    L RK+ KLR + LV
Sbjct:  419 PGCEPTVSTYEIMVRMFCNEDRTDMALRVWDKMKANGVLPGMHSFSTLINSFCRENKLDDACRYFQEMLDMGMRPPIPLFDNLKRALLDEGKEDTVKALWRKLEKLRKSSLV 530

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A087HHC8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G141500 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.927e-46
Identity = 74/111 (66.67%), Postives = 95/111 (85.59%), Query Frame = -2

Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
             CEPTVSTYEI+VRMFCN +R+D+A ++WD+MK KGVLPGMHM+S LIT+LC+++KL EAC+YF EMLD GI+ P +MFS LKQALLDEG+KD+ ++L  K++KLR T LV
Sbjct:  404 SCEPTVSTYEIMVRMFCNIERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCYENKLDEACEYFSEMLDVGIKAPGQMFSRLKQALLDEGRKDKVVDLAVKMDKLRKTQLV 514

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.266e-49
Identity = 75/111 (67.57%), Postives = 94/111 (84.68%), Query Frame = -2

Query:   48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380
             CEPTVSTYEI+VRMFCN++R+D+A ++WD+MK KGVLPGMHM+S LIT+LCH++KL EAC+YF EMLD GIRPP  MFS LKQ LLDEG+KD+  +L  K+++LR T LV
Sbjct:  399 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKTQLV 509

HSP 2 Score: 53.1434 bits (126), Expect = 1.188e-7
Identity = 32/95 (33.68%), Postives = 46/95 (48.42%), Query Frame = -2

Query:   96 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 380
            G  P   TY+II+       R   A +V+  M  +   P +  Y  ++   C+K++L  A K + EM   G+ P   MFS+L  AL  E K DEA
Sbjct:  367 GVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCE---PTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEA 458

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.036e-22
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = -2

Query:   51 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPL 377
            CEP   TY ++++MFC +  ++ A +VW  M+ KGV P MH +S LI  LC +    +AC   +EM++ GIRP    F  L+Q L+ E ++D    L  K+N L   PL
Sbjct:  407 CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLVNEPL 515

HSP 2 Score: 59.3066 bits (142), Expect = 1.199e-9
Identity = 27/104 (25.96%), Postives = 60/104 (57.69%), Query Frame = -2

Query:   66 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKL 377
            C+PT   Y ++V  +  E+R++ A   + +M+  G+   + +++ LI + C  +++    +  +EM   G+ P +K  + + + L++ G+KDEA ++ RK+ K+
Sbjct:  303 CKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV 406

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-15
Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = -2

Query:   57 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGT 380
            GCEP + TY I++  +C   RVD   +++ ++  KG++P    Y+ L+   C   KL  A + FQEM+  G+ P    +  L   L D G+ ++AL +  K+ K R T
Sbjct:  380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487

HSP 2 Score: 54.299 bits (129), Expect = 5.092e-8
Identity = 29/93 (31.18%), Postives = 47/93 (50.54%), Query Frame = -2

Query:   96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374
            + +V  Y I++   C +   D A  ++++M++KG+   +  YS LI  LC+  K  +  K  +EM+   I P    FS L    + EGK  EA
Sbjct:  242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334

HSP 3 Score: 54.299 bits (129), Expect = 5.677e-8
Identity = 32/109 (29.36%), Postives = 52/109 (47.71%), Query Frame = -2

Query:   54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380
            G  P   TY  ++  FC E+ +  A Q++D M  KG  P +  YS LI S C   ++ +  + F+E+   G+ P    ++ L       GK + A  L +++   RG P
Sbjct:  345 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS-RGVP 452

HSP 4 Score: 52.373 bits (124), Expect = 2.326e-7
Identity = 28/109 (25.69%), Postives = 58/109 (53.21%), Query Frame = -2

Query:   54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380
            G  P+V TY I++   C+   ++ A +++++M+   +  G+ +Y+ +I  +C+  K+ +A   F  + D G++P    ++ +   L  +G   EA  L RK+ +   TP
Sbjct:  450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558

HSP 5 Score: 50.447 bits (119), Expect = 9.455e-7
Identity = 32/102 (31.37%), Postives = 46/102 (45.10%), Query Frame = -2

Query:   75 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKI 380
            G EP   T+  +V  FC E RV  A  + D+M      P +   S LI  LC K ++ EA      M++ G +P    +  +   L   G    AL+L RK+
Sbjct:  135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM 236

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP150_ARATH (Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.428e-14
Identity = 32/103 (31.07%), Postives = 55/103 (53.40%), Query Frame = -2

Query:   69 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 377
            C+P+  TY +++  F N  +++  K++WD +K     P +  Y+ L+  LC K+K  EAC YF EM++ G  P    F  L + L+   K      L +K+++
Sbjct:  388 CKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDE 490

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.022e-13
Identity = 33/104 (31.73%), Postives = 57/104 (54.81%), Query Frame = -2

Query:   69 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 380
            GC+P + T+ I++  +C  +R+D   +++ +M ++GV+     Y+ L+   C   KL  A K FQEM+   +RP    +  L   L D G+ ++AL +  KI K
Sbjct:  398 GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501

HSP 2 Score: 53.5286 bits (127), Expect = 1.041e-7
Identity = 31/112 (27.68%), Postives = 54/112 (48.21%), Query Frame = -2

Query:   45 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVV 380
            G  P   TY  ++  FC E+R++ A Q+ D M  KG  P +  ++ LI   C  +++ +  + F+EM   G+      ++ L Q     GK + A  L +++   R  P +V
Sbjct:  363 GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIV 474

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.263e-12
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = -2

Query:   54 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 374
            EP V  Y  +VR +C    +  A++V+ +MK+ G+ P ++ YS +I +LC   ++  A   F +MLD+G  P A  F+NL +  +  G+ ++ L +  ++ KL   P
Sbjct:  252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEP 358

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.756e-12
Identity = 32/104 (30.77%), Postives = 56/104 (53.85%), Query Frame = -2

Query:   69 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 380
            GC+P + T+ I++  +C  +R+D   +++ +M ++GV+     Y+ LI   C   KL  A + FQEM+   + P    +  L   L D G+ ++AL +  KI K
Sbjct:  398 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501

HSP 2 Score: 55.0694 bits (131), Expect = 3.309e-8
Identity = 31/102 (30.39%), Postives = 54/102 (52.94%), Query Frame = -2

Query:   69 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 374
            E  +  Y II+   CN  +VD A  ++  + +KGV PG+  Y+ +I  LC K  L EA   F++M + G  P    ++ L +A L +G   +++ L  ++ +
Sbjct:  505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKR 606

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP412_ARATH (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.618e-12
Identity = 35/112 (31.25%), Postives = 61/112 (54.46%), Query Frame = -2

Query:   45 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVV 380
            G EP + T+  ++  FC  +R++ A  + +QM   G+ P + MY+ +I SLC    +  A   F +M + GIRP   M+++L   L + G+  +A +L R + K +  P V+
Sbjct:  137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248

HSP 2 Score: 56.225 bits (134), Expect = 1.212e-8
Identity = 31/109 (28.44%), Postives = 53/109 (48.62%), Query Frame = -2

Query:   54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380
            G +P V  Y  I+   C    V+ A  ++DQM+  G+ P + MY+ L+  LC+  +  +A    + M    I+P    F+ L  A + EGK  +A  L  ++ ++   P
Sbjct:  172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR99_ARATH (Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.216e-11
Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = -2

Query:   45 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVV 380
            GC+P + TY I+V   C    +DLA  +  +M+   + PG+ +Y+ +I +LC+   + +A   F EM + GIRP    +++L + L + G+  +A  L   + + +  P VV
Sbjct:  216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 327

HSP 2 Score: 58.9214 bits (141), Expect = 1.537e-9
Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = -2

Query:   96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374
            EP V  Y  I+   CN   V+ A  ++ +M  KG+ P +  Y+ LI  LC+  +  +A +   +M++  I P    FS L  A + EGK  EA
Sbjct:  253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345

HSP 3 Score: 53.9138 bits (128), Expect = 8.375e-8
Identity = 29/104 (27.88%), Postives = 53/104 (50.96%), Query Frame = -2

Query:   63 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLR 374
            EP + TY I++   C   +V+    ++  + +KGV P +  Y+ +++  C K    EA   F+EM + G  P +  ++ L +A L +G K  +  L R++   R
Sbjct:  498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCR 601

HSP 4 Score: 53.1434 bits (126), Expect = 1.160e-7
Identity = 25/102 (24.51%), Postives = 48/102 (47.06%), Query Frame = -2

Query:   75 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKI 380
            G    + TY I++  FC   ++ LA  V  +M   G  P +   + L+   CH +++ +A     +M++ G +P +  F+ L   L    +  EA+ L  ++
Sbjct:  111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212

HSP 5 Score: 53.1434 bits (126), Expect = 1.247e-7
Identity = 26/102 (25.49%), Postives = 51/102 (50.00%), Query Frame = -2

Query:   69 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 374
             P V T+  ++  F  E ++  A++++D+M  + + P +  YS LI   C  D+L EA   F+ M+     P    ++ L +      + DE + L R++++
Sbjct:  323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424

HSP 6 Score: 52.373 bits (124), Expect = 2.085e-7
Identity = 28/108 (25.93%), Postives = 51/108 (47.22%), Query Frame = -2

Query:   54 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 377
            C P V TY  +++ FC   RVD   +++ +M  +G++     Y+ LI       +   A   F++M+  G+ P    +S L   L + GK + AL +   + + +  P
Sbjct:  392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEP 499

HSP 7 Score: 51.2174 bits (121), Expect = 6.246e-7
Identity = 25/93 (26.88%), Postives = 43/93 (46.24%), Query Frame = -2

Query:   96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374
            +P + TY  ++  FC  DR+D AK +++ M  K   P +  Y+ LI   C   ++ E  + F+EM   G+      ++ L        + D A
Sbjct:  358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNA 450

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.356e-11
Identity = 34/102 (33.33%), Postives = 52/102 (50.98%), Query Frame = -2

Query:   72 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKIN 377
            C PTV TY  ++   C    VD A +  ++MK KG+ P +  YS L+  LC   +  +A + F+ M+  G RP    ++ L   L  E K  EA+ L  ++N
Sbjct:  223 CAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMN 324

HSP 2 Score: 64.6994 bits (156), Expect = 1.435e-11
Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = -2

Query:   87 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNL 380
            GC+P   TY  ++   C   R+D AK+++ +M  K   P +  Y+ LI  LC    + EA +Y +EM   GI P    +S+L   L  +G+  +A+ L
Sbjct:  187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMEL 284

HSP 3 Score: 56.225 bits (134), Expect = 1.055e-8
Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = -2

Query:  159 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRP 380
            GC P + TY  ++   C E ++  A ++ D+M ++G+ P   +Y  +I+  C   K  EA  +  EM+  GI P
Sbjct:  292 GCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITP 365

HSP 4 Score: 55.8398 bits (133), Expect = 1.584e-8
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = -2

Query:   87 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNL 380
            G EP V TY  ++   C + R   A ++++ M  +G  P M  Y+ LIT LC + K+ EA +    M   G++P A ++  +        K  EA N 
Sbjct:  257 GIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANF 354

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A068U7T5_COFCA	3.603e-49	68.75	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
R0GFP7_9BRAS	6.233e-48	67.57	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
K7LLK9_SOYBN	1.094e-47	67.86	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
D7KYI3_ARALL	3.475e-47	66.67	Pentatricopeptide repeat-containing protein OS=Ara...	[more]
V7BAW1_PHAVU	4.688e-47	68.47	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
V4NJL2_EUTSA	2.308e-46	63.96	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
K4BX07_SOLLC	3.846e-46	66.96	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
B9SYJ4_RICCO	4.210e-46	69.09	Pentatricopeptide repeat-containing protein, putat...	[more]
M1D082_SOLTU	4.337e-46	66.96	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
A0A087HHC8_ARAAL	4.927e-46	66.67	Uncharacterized protein OS=Arabis alpina GN=AALP_A...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
PP112_ARATH	1.266e-49	67.57	Pentatricopeptide repeat-containing protein At1g71...	[more]
PP129_ARATH	7.036e-22	39.45	Pentatricopeptide repeat-containing protein At1g77...	[more]
PP247_ARATH	1.947e-15	33.33	Pentatricopeptide repeat-containing protein At3g22...	[more]
PP150_ARATH	2.428e-14	31.07	Pentatricopeptide repeat-containing protein At2g13...	[more]
PPR39_ARATH	2.022e-13	31.73	Pentatricopeptide repeat-containing protein At1g12...	[more]
PPR54_ARATH	1.263e-12	31.78	Pentatricopeptide repeat-containing protein At1g20...	[more]
PPR36_ARATH	1.756e-12	30.77	Pentatricopeptide repeat-containing protein At1g12...	[more]
PP412_ARATH	4.618e-12	31.25	Pentatricopeptide repeat-containing protein At5g41...	[more]
PPR99_ARATH	1.216e-11	30.36	Pentatricopeptide repeat-containing protein At1g63...	[more]
PP418_ARATH	1.356e-11	33.33	Pentatricopeptide repeat-containing protein At5g46...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 29..60 e-value: 9.8E-7 score: 26.6 coord: 2..25 e-value: 2.5E-4 score: 19.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 2..23 e-value: 0.076 score: 13.2 coord: 29..58 e-value: 2.4E-5 score: 24.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1..25 score: 8.331
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 26..60 score: 10.402
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 61..95 score: 5.963
None	No IPR available	PANTHER	PTHR24015:SF261	SUBFAMILY NOT NAMED	coord: 1..100
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..100

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0018368 ID=g.arboreum_cottongen_reftransV1_0018368; Name=g.arboreum_cottongen_reftransV1_0018368; organism=Gossypium arboreum; type=contig; length=384bp
GGGCACCAGCATACAGCTCACATTCTTTCTCACTTCTGGTCTCGAACAAC
TAACGGAGTTCCCCTCAGCTTATTGATTTTCCGAGTCAAATTTAAAGCTT
CATCCTTCTTCCCCTCATCAAGTAGAGCCTGTTTCAGATTACTAAACATC
TTGGCCGGAGGTCGAATACCTGCATCCAACATTTCCTGAAAATATTTGCA
AGCTTCACCTAACTTGTCCTTGTGACACAAACTGGTAATTAAATCAGAGT
ACATATGCATCCCTGGAAGCACTCCCTTGACCTTCATCTGATCCCAAACC
TGCTTTGCCAAATCCACTCGATCCTCGTTGCAGAACATCCTTACTATAAT
TTCGTAAGTACTCACAGTTGGCTCACAGCCCGGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_rpt

Search form

g.arboreum_cottongen_reftransV1_0018368, g.arboreum_cottongen_reftransV1_0018368 (contig) Gossypium arboreum

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