g.arboreum_cottongen_reftransV1_0020660, g.arboreum_cottongen_reftransV1_0020660 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A5BBI8_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_030353 PE=4 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 4.010e-70 Identity = 154/291 (52.92%), Postives = 185/291 (63.57%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNS--LKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSP--------NLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQ-----QQNHVVQNRGR-------YANRTLGLAPSAW 857 MAE LDDGEFWLP+QFLTD D D N N + G G S + +++ G S DL SPVESV GSTETESDE DYLAGLTRQ+AH L+D+ + D F EN K W ++ SPQSTLCA+ GCGCKQ SSR SP S+VSSPP TWDLLYAAAGEV ++RMN+E YG +RGLL PP RKPSP N D +GFY+ S+SH + + T FQQLKQQQ+MKQ+ WGG +Q+ Q V+QNRG+ +NR LGL+ SAW Sbjct: 1 MAESLDDGEFWLPAQFLTDKDIIMDKGNINNSRNKGGITTGIGF------SSYRYDL------FGPSSDLSSPVESVNGSTETESDEEDYLAGLTRQIAHAALQDEFVKVDHGFVYENKKTWGMAGSPQSTLCAVGGGCGCKQASSRGSPISPSQVSSPPATWDLLYAAAGEVAKIRMNDEEYGYQQSRGLLAPP-RKPSPISIPVKNANTD-AGFYSNXSVSHQQFQATQFQQLKQQQMMKQRPQAVWGGQQQKGTGLYQPQQVIQNRGKSNEVGINRSNRPLGLSLSAW 277
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: F6HL14_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g01450 PE=4 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 6.564e-69 Identity = 154/291 (52.92%), Postives = 183/291 (62.89%), Query Frame = -1 Query: 54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNS--LKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPS--------PNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQ-----QQNHVVQNRGR-------YANRTLGLAPSAW 857 MAE LDDGEFWLP+QFLTD D D N N + G G G+ G S DL SPVESV GSTETESDE DYLAGLTRQ+AH L+D+ + D F EN K W ++ SPQSTLCA+ GCGCKQGSSR SP S+VSSPP TWDLLYAAAGEV ++RMN+E YG +RGLL PP RKPS N D +GFY+ +S+SH + + T FQQLKQQQ+MKQ+ WGG +Q+ Q V+QNRG+ +NR LGL+ SAW Sbjct: 1 MAESLDDGEFWLPAQFLTDKDILMDKGNINNSRNKGGITTGIGFS------------SYGYDLFGPSSDLSSPVESVNGSTETESDEEDYLAGLTRQIAHTALQDEFVKVDHGFVYENKKTWGMAGSPQSTLCAVGGGCGCKQGSSRGSPISPSQVSSPPATWDLLYAAAGEVAKIRMNDEEYGYQQSRGLLAPP-RKPSLISVPVKNANTD-AGFYSNRSVSHQQFQATQFQQLKQQQMMKQRPQAVWGGQQQKGTGLYQPQQVIQNRGKSNEVGINRSNRPLGLSLSAW 277
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: U5G682_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s09410g PE=4 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 6.167e-66 Identity = 178/302 (58.94%), Postives = 197/302 (65.23%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN-SLKDGFGL-ELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSN--RGLLGPPARKPS--------PNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNAL----AWGGL---------KQQQQNH-VVQNRGRYANRT----LGLAPSAWPPL 857 M E LDDGEFWLP QFL DDD + N N S +D FG + D KSLFP E P GFGS G S DL SPVESV+GSTETESDE DYLAGLTRQMAH TLED +RND +F E +KGWV+S SPQSTLCA+ SGCGC QGSSR SP+ S + TWDLLYAAAGEVER+RMN E GF+N RGLLGPP RKPS PN DVS + QQSLS+ KL+ + FQQLK QQ M QQ WGG +Q QQ H VVQNRGR LGL+ SAWPPL Sbjct: 1 MTESLDDGEFWLPPQFLIDDDTVLMEQNSENSLNGSARDVFGYSKTDSGKSLFPLEFPCGFGSFGFSSDLSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDGFKRNDLTFGTEKSKGWVVSGSPQSTLCAVGSGCGCGQGSSRGSPSGSSPPA----TWDLLYAAAGEVERMRMNNEEGCGFNNQSRGLLGPP-RKPSPVSIPLKNPNSDVSLYQQQQSLSYQKLQASQFQQLKVQQQMMQQQLQQQQSVWGGKNKGTGVLFPQQPQQTHPVVQNRGRNVTSVSRGPLGLSASAWPPL 297
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0B0PDR7_GOSAR (TIP41-like protein OS=Gossypium arboreum GN=F383_04290 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 4.828e-63 Identity = 142/276 (51.45%), Postives = 169/276 (61.23%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEE-GYGGFSNRGLLGPPARKPSPNLDVSGFY-TQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNHVVQNRGRYA--NRTLGLAPSAWPPL 857 MA+VLDD E WLPSQFLTDD+F GFGL SPVESV+GSTET+SDE DYLA LTR+MAH TL RN +FA++ +KGWVL SSP+STLCAL SGCGCKQGS S NCQSRVSSP G D A AGEV +R N E YGGF+NR LLGPPARK ++DVSGFY + QSLS + L+ + Q++Q + + L QQ +HV QN+GR + NR LG++PSAWPPL Sbjct: 1 MAKVLDDAESWLPSQFLTDDEF----------------GFGLN--------------------------SPVESVVGSTETDSDEEDYLAELTRRMAHSTL-----RNSHAFASQYSKGWVLPSSPESTLCALRSGCGCKQGSIHGSFNCQSRVSSPLGRRDYA-AVAGEVASMRENRESSYGGFTNRSLLGPPARK---SIDVSGFYPSHQSLSQHNLQAS---QVQQLKQQQLMKQLKHQHQYQQNYSHVFQNKGRNSNNNRPLGMSPSAWPPL 222
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2SR37_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G377500 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.213e-60 Identity = 145/278 (52.16%), Postives = 168/278 (60.43%), Query Frame = -1 Query: 45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEG-YGGFSNRGLLGPPARKPSPNLDVSGFYT-QQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNH--VVQNRGRYA--NRTLGLAPSAWPPL 857 MA+VLDD EFWLPSQFLTDD+F+ FGL PVESV+GSTET+SDE DYLA LTR MAH TL RN+ +FA++ +KG VL SSPQSTLCAL SGC CKQG S NCQSRVSSP G WD A AGEV +R N E YGGF+NRGLLGPPARK ++DVSGFY QSLSH L+ + + QQL +QQ Q QQN+ V QN+GR + NR LG++PSAWPPL Sbjct: 1 MAKVLDDAEFWLPSQFLTDDEFW----------------FGLNF--------------------------PVESVVGSTETDSDEEDYLAELTRLMAHSTL-----RNNHAFASQYSKGRVLPSSPQSTLCALRSGCSCKQGP-HGSFNCQSRVSSPLGRWDYA-AVAGEVASMRENRESSYGGFTNRGLLGPPARK---SIDVSGFYPFHQSLSHRNLQAS-----QVQQLKQQQLMKQLKHQHQYQQNYSLVFQNKGRNSNNNRPLGMSPSAWPPL 221 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020660 ID=g.arboreum_cottongen_reftransV1_0020660; Name=g.arboreum_cottongen_reftransV1_0020660; organism=Gossypium arboreum; type=contig; length=1082bpback to top |