g.arboreum_cottongen_reftransV1_0020660, g.arboreum_cottongen_reftransV1_0020660 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020660
Unique Nameg.arboreum_cottongen_reftransV1_0020660
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1082
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0020660:1..1082 .
Chr11:21138136..21139380 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A5BBI8_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_030353 PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.010e-70
Identity = 154/291 (52.92%), Postives = 185/291 (63.57%), Query Frame = -1
Query:   54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNS--LKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPSP--------NLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQ-----QQNHVVQNRGR-------YANRTLGLAPSAW 857
            MAE LDDGEFWLP+QFLTD D   D     N  N   +  G G       S + +++       G S DL SPVESV GSTETESDE DYLAGLTRQ+AH  L+D+  + D  F  EN K W ++ SPQSTLCA+  GCGCKQ SSR SP   S+VSSPP TWDLLYAAAGEV ++RMN+E YG   +RGLL PP RKPSP        N D +GFY+  S+SH + + T FQQLKQQQ+MKQ+    WGG +Q+     Q   V+QNRG+        +NR LGL+ SAW
Sbjct:    1 MAESLDDGEFWLPAQFLTDKDIIMDKGNINNSRNKGGITTGIGF------SSYRYDL------FGPSSDLSSPVESVNGSTETESDEEDYLAGLTRQIAHAALQDEFVKVDHGFVYENKKTWGMAGSPQSTLCAVGGGCGCKQASSRGSPISPSQVSSPPATWDLLYAAAGEVAKIRMNDEEYGYQQSRGLLAPP-RKPSPISIPVKNANTD-AGFYSNXSVSHQQFQATQFQQLKQQQMMKQRPQAVWGGQQQKGTGLYQPQQVIQNRGKSNEVGINRSNRPLGLSLSAW 277          
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: F6HL14_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g01450 PE=4 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.564e-69
Identity = 154/291 (52.92%), Postives = 183/291 (62.89%), Query Frame = -1
Query:   54 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNS--LKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSNRGLLGPPARKPS--------PNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQ-----QQNHVVQNRGR-------YANRTLGLAPSAW 857
            MAE LDDGEFWLP+QFLTD D   D     N  N   +  G G                G+   G S DL SPVESV GSTETESDE DYLAGLTRQ+AH  L+D+  + D  F  EN K W ++ SPQSTLCA+  GCGCKQGSSR SP   S+VSSPP TWDLLYAAAGEV ++RMN+E YG   +RGLL PP RKPS         N D +GFY+ +S+SH + + T FQQLKQQQ+MKQ+    WGG +Q+     Q   V+QNRG+        +NR LGL+ SAW
Sbjct:    1 MAESLDDGEFWLPAQFLTDKDILMDKGNINNSRNKGGITTGIGFS------------SYGYDLFGPSSDLSSPVESVNGSTETESDEEDYLAGLTRQIAHTALQDEFVKVDHGFVYENKKTWGMAGSPQSTLCAVGGGCGCKQGSSRGSPISPSQVSSPPATWDLLYAAAGEVAKIRMNDEEYGYQQSRGLLAPP-RKPSLISVPVKNANTD-AGFYSNRSVSHQQFQATQFQQLKQQQMMKQRPQAVWGGQQQKGTGLYQPQQVIQNRGKSNEVGINRSNRPLGLSLSAW 277          
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: U5G682_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s09410g PE=4 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 6.167e-66
Identity = 178/302 (58.94%), Postives = 197/302 (65.23%), Query Frame = -1
Query:   45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTN-SLKDGFGL-ELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEGYGGFSN--RGLLGPPARKPS--------PNLDVSGFYTQQSLSHNKLRTTHFXXXXXXXXXXXQNAL----AWGGL---------KQQQQNH-VVQNRGRYANRT----LGLAPSAWPPL 857
            M E LDDGEFWLP QFL DDD       + N  N S +D FG  + D  KSLFP E P GFGS G S DL SPVESV+GSTETESDE DYLAGLTRQMAH TLED  +RND +F  E +KGWV+S SPQSTLCA+ SGCGC QGSSR SP+  S  +    TWDLLYAAAGEVER+RMN E   GF+N  RGLLGPP RKPS        PN DVS +  QQSLS+ KL+ + FQQLK QQ M QQ        WGG          +Q QQ H VVQNRGR         LGL+ SAWPPL
Sbjct:    1 MTESLDDGEFWLPPQFLIDDDTVLMEQNSENSLNGSARDVFGYSKTDSGKSLFPLEFPCGFGSFGFSSDLSSPVESVVGSTETESDEEDYLAGLTRQMAHSTLEDGFKRNDLTFGTEKSKGWVVSGSPQSTLCAVGSGCGCGQGSSRGSPSGSSPPA----TWDLLYAAAGEVERMRMNNEEGCGFNNQSRGLLGPP-RKPSPVSIPLKNPNSDVSLYQQQQSLSYQKLQASQFQQLKVQQQMMQQQLQQQQSVWGGKNKGTGVLFPQQPQQTHPVVQNRGRNVTSVSRGPLGLSASAWPPL 297          
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0B0PDR7_GOSAR (TIP41-like protein OS=Gossypium arboreum GN=F383_04290 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.828e-63
Identity = 142/276 (51.45%), Postives = 169/276 (61.23%), Query Frame = -1
Query:   45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEE-GYGGFSNRGLLGPPARKPSPNLDVSGFY-TQQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNHVVQNRGRYA--NRTLGLAPSAWPPL 857
            MA+VLDD E WLPSQFLTDD+F                GFGL                           SPVESV+GSTET+SDE DYLA LTR+MAH TL     RN  +FA++ +KGWVL SSP+STLCAL SGCGCKQGS   S NCQSRVSSP G  D   A AGEV  +R N E  YGGF+NR LLGPPARK   ++DVSGFY + QSLS + L+ +   Q++Q +  +    L      QQ  +HV QN+GR +  NR LG++PSAWPPL
Sbjct:    1 MAKVLDDAESWLPSQFLTDDEF----------------GFGLN--------------------------SPVESVVGSTETDSDEEDYLAELTRRMAHSTL-----RNSHAFASQYSKGWVLPSSPESTLCALRSGCGCKQGSIHGSFNCQSRVSSPLGRRDYA-AVAGEVASMRENRESSYGGFTNRSLLGPPARK---SIDVSGFYPSHQSLSQHNLQAS---QVQQLKQQQLMKQLKHQHQYQQNYSHVFQNKGRNSNNNRPLGMSPSAWPPL 222          
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Match: A0A0D2SR37_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G377500 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.213e-60
Identity = 145/278 (52.16%), Postives = 168/278 (60.43%), Query Frame = -1
Query:   45 MAEVLDDGEFWLPSQFLTDDDFFADGVKTTNDTNSLKDGFGLELDGNKSLFPFEIPGGFGSLGLSPDLGSPVESVLGSTETESDE-DYLAGLTRQMAHCTLEDDSRRNDRSFAAENTKGWVLSSSPQSTLCALPSGCGCKQGSSRASPNCQSRVSSPPGTWDLLYAAAGEVERLRMNEEG-YGGFSNRGLLGPPARKPSPNLDVSGFYT-QQSLSHNKLRTTHFXXXXXXXXXXXQNALAWGGLKQQQQNH--VVQNRGRYA--NRTLGLAPSAWPPL 857
            MA+VLDD EFWLPSQFLTDD+F+                FGL                            PVESV+GSTET+SDE DYLA LTR MAH TL     RN+ +FA++ +KG VL SSPQSTLCAL SGC CKQG    S NCQSRVSSP G WD   A AGEV  +R N E  YGGF+NRGLLGPPARK   ++DVSGFY   QSLSH  L+ +     + QQL +QQ         Q QQN+  V QN+GR +  NR LG++PSAWPPL
Sbjct:    1 MAKVLDDAEFWLPSQFLTDDEFW----------------FGLNF--------------------------PVESVVGSTETDSDEEDYLAELTRLMAHSTL-----RNNHAFASQYSKGRVLPSSPQSTLCALRSGCSCKQGP-HGSFNCQSRVSSPLGRWDYA-AVAGEVASMRENRESSYGGFTNRGLLGPPARK---SIDVSGFYPFHQSLSHRNLQAS-----QVQQLKQQQLMKQLKHQHQYQQNYSLVFQNKGRNSNNNRPLGMSPSAWPPL 221          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A5BBI8_VITVI4.010e-7052.92Putative uncharacterized protein (Fragment) OS=Vit... [more]
F6HL14_VITVI6.564e-6952.92Putative uncharacterized protein OS=Vitis vinifera... [more]
U5G682_POPTR6.167e-6658.94Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0B0PDR7_GOSAR4.828e-6351.45TIP41-like protein OS=Gossypium arboreum GN=F383_0... [more]
A0A0D2SR37_GOSRA1.213e-6052.16Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020660 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020660 ID=g.arboreum_cottongen_reftransV1_0020660; Name=g.arboreum_cottongen_reftransV1_0020660; organism=Gossypium arboreum; type=contig; length=1082bp
GGCTGGGGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGAGG
GGGCCACGCAGATGGGGCCAAACCCAAAGTCCTATTGGCATACCTTCCTC
TGTTTTGGACCACATGGTTTTGTTGTTGCTGCTTCAACCCTCCCCACGCC
AACGCGTTTTGTTGCTTCATTAGCTGTTGTTGCTTCAGTTGCTGGAAATG
AGTGGTCCGCAGCTTATTGTGAGAAAGTGACTGTTGAGTGTAAAACCCAG
AAACATCGAGATTTGGAGAGGGTTTTCTAGCTGGTGGACCCAAAAGGCCT
CTGTTGCTGAATCCACCATACCCTTCTTCATTCATTCGCAACCTTTCCAC
TTCCCCGGCCGCTGCATAAAGCAAGTCCCAGGTTCCCGGCGGCGATGAAA
CTCGAGATTGACAGTTCGGGCTTGCACGACTAGAACCTTGCTTACAACCA
CAACCGCTCGGTAACGCACATAGGGTAGACTGCGGTGAACTGGACAAGAC
CCAACCCTTGGTATTTTCAGCGGCAAACGAGCGGTCGTTTCGGCGGGAAT
CGTCTTCGAGAGTGCAGTGAGCCATTTGGCGAGTTAAGCCAGCGAGATAA
TCTTCATCACTCTCTGTTTCAGTTGAACCCAGCACAGACTCAACAGGAGA
ACCTAGATCCGGAGACAACCCGAGAGACCCAAACCCGCCGGGGATCTCAA
AGGGAAACAAAGACTTGTTACCATCAAGCTCTAACCCGAACCCATCTTTA
AGACTATTGGTATCGTTGGTAGTCTTAACTCCGTCGGCGAAAAAGTCATC
GTCGGTTAAGAACTGGGACGGAAGCCAAAACTCACCGTCGTCTAAAACCT
CCGCCATAACCAGCAAGAGAAAAAAAAAGAAAAAAAAAAGGCCAAAAGAA
AAGCAGCAAAGAGAGGTTATTAGAAGGGAAAAGAAGGGAGCATTTGGTGA
GAGTAGGGAGCTCGGCGCTTAAGGGTAAGAATTAATATAATAAGCAGTTG
CAGCCCTGTTGATATCGCTGGCTGTGGCAGAGATCGGGCCCAGCCAAAGA
GAAAAAAGCGAAAAAGAAAAATGAAAATGTAT
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