g.arboreum_cottongen_reftransV1_0000098, g.arboreum_cottongen_reftransV1_0000098 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: K7M8M3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 6.507e-119 Identity = 200/276 (72.46%), Postives = 235/276 (85.14%), Query Frame = -1 Query: 13 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKAS---------------SKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAG 795 SGEDYD++GRPV+NCLFFAGEATCKEHPDTVGGAM+SGLREAVR+IDI ++GNDY AEVEA+E A+ + ++ RDEVRDIIKRL+A+ELSN++YKNSLD A +L+REALL++MF N KTTAGRLH+AK+LL LPV +LKSFAG+KEGL+ LNSW+LDSMGKDGTQLLRHC+RLLV VSTDLLAVR SG+GKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRK KAS SKRK +KD+ASGKPPL + HG E+K L +P AG Sbjct: 1259 SGEDYDIIGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILSSGNDYIAEVEALEAARGQLDTERDEVRDIIKRLDALELSNIMYKNSLDGAQILTREALLKEMFNNTKTTAGRLHVAKQLLTLPVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKISRQTTAVDLSKRKSVKDSASGKPPLSTYHGTIENKGGLLNPTSAG 1534
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: B9GRG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02860g PE=4 SV=2) HSP 1 Score: 383.645 bits (984), Expect = 1.768e-118 Identity = 205/265 (77.36%), Postives = 226/265 (85.28%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYD+LGRPVEN +FFAGEATCKEHPDTVGGAM+SGLREAVR+IDI + G DYTAEVEAMEGAQR SE RDEVRDI KRLEAVELSNVLYKNSLDRA +L+REALL+DMFF+ KTTAGRLHLAK LL LPV +LKSFAGT++GL+ LNSW+LDSMGKDGTQLLRHCVRLLVLVSTDLLAVR SGIGKTVKEK+CVHTSRDIRAIASQLVSVWLEVFR+ KAS +GKPPL + HGA E++ + Q P P Sbjct: 1313 SGEDYDILGRPVENSVFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILSMGTDYTAEVEAMEGAQRHSEVERDEVRDITKRLEAVELSNVLYKNSLDRARLLTREALLRDMFFSAKTTAGRLHLAKMLLNLPVGTLKSFAGTRKGLTMLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRREKAS----------NGKPPLRTHHGALEARGNSQVSAPTRGPLP 1567
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: V7CTW3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G009300g PE=4 SV=1) HSP 1 Score: 382.489 bits (981), Expect = 2.105e-118 Identity = 201/280 (71.79%), Postives = 232/280 (82.86%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKAS---------------SKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYD+LGRPV+NCLFFAGEATCKEHPDTVGGAM+SGLRE+VR+IDI +TGNDY AEVEA+E A+ + + RDEVRDIIKRL+AVELSN++YKNSLD A +L+REALL++MFFN KTT GRLH+AK+LL L V +LKSFAG+KEGL+ LNSW+LDSMGKDGTQLLRHC+RLLV VSTDLLAVR SG+GKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRK KAS SKRK KD+A GKPPL + HG E+K L +P AG P Sbjct: 1271 SGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLRESVRIIDILSTGNDYIAEVEALEAARGQLDPERDEVRDIIKRLDAVELSNIMYKNSLDGAQILTREALLREMFFNTKTTGGRLHVAKQLLTLSVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKLPKQTTVLDLSKRKSAKDSALGKPPLGTYHGTIENKGGLLNPTSAGSNSP 1550
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: G7I5Y4_MEDTR (Polyamine oxidase OS=Medicago truncatula GN=MTR_1g023510 PE=4 SV=1) HSP 1 Score: 381.333 bits (978), Expect = 1.369e-117 Identity = 197/280 (70.36%), Postives = 233/280 (83.21%), Query Frame = -1 Query: 1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKAS---------------SKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795 SGEDYD++GRPV+NCLFFAGEATCKEHPDTVGGAM+SGLREAVR+IDI TGND TAEVEA+E AQ + ++ R+EVRDIIKRL+A+ELSN++YKNS + A +L+REALL++MF NVKT AGRLH+AK+LL LP+ +LKSFAG+KEGL+ LNSW+LDSMGKDGTQLLRHC+RLLV VSTDL AVR SG+GKTVKEK+CVHTSRDIRAIASQLV+VWLE+FRK KAS SKRK LK++ASGKPPL + GA E+K L +P AG P Sbjct: 1300 SGEDYDIIGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDNTAEVEALEAAQGQLDTERNEVRDIIKRLDALELSNIMYKNSFEGAQILTREALLREMFLNVKTNAGRLHVAKQLLSLPIGNLKSFAGSKEGLTVLNSWILDSMGKDGTQLLRHCLRLLVRVSTDLGAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEIFRKEKASNGGLKLSRQAATVELSKRKSLKESASGKPPLSTHQGAIENKGGLLNPVSAGSNSP 1579
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A072V301_MEDTR (Polyamine oxidase OS=Medicago truncatula GN=MTR_3g113170 PE=4 SV=1) HSP 1 Score: 381.333 bits (978), Expect = 1.376e-117 Identity = 202/272 (74.26%), Postives = 228/272 (83.82%), Query Frame = -1 Query: 25 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKAS---------------SKRKPLKDTASGKPPLHSQHGAFESKPSLQDP 795 SGEDYD+LGRPV+ CLFFAGEATCKEHPDTVGGAM+SGLREAVR+ID+ TGNDYTAEVE +E Q++S++ RDEVRDIIKRL+A ELSN+LYK SLD A +LSREALL+D+F N KT AGRLH+AK+LL LPV +LKSFAG+K+GL+ LNSW+LDSMGKDGTQLLRHCVRLLVLVSTDLLAVR SGIGKTVKEK+CVHTSRDIRAIASQLVSVWLEVFRK K S SKRK +KD ASGKPPL S HG FE+K + P Sbjct: 1299 SGEDYDILGRPVDKCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDLLNTGNDYTAEVEVVEAIQKQSDTERDEVRDIIKRLDAAELSNLLYKKSLDGARILSREALLRDLFLNAKTNAGRLHVAKQLLSLPVANLKSFAGSKKGLNILNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRKEKTSNGGRKLSRHANAVDISKRKCIKDPASGKPPLSSYHGTFENKGGILTP 1570
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=LDL3 PE=2 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 4.610e-100 Identity = 166/232 (71.55%), Postives = 200/232 (86.21%), Query Frame = -1 Query: 100 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLK 795 SGEDYD+LGRPV+NCLFFAGEATCKEHPDTVGGAM++G+REAVR+IDI +GNDYTAE+E +E AQR+S RDEVRD+IKRLE VELSNVL +R++LL++MFF+ KTT GRLHLAK+LL LP E+LKSFAGTKEGL+ LNSW+LDSMGK+GTQLLRHCV +LV V++DL A+R SGIGKTVKEK+C HTSRDIRAIASQLV+VWL+++RK KA+S +K L+ Sbjct: 1057 SGEDYDVLGRPVQNCLFFAGEATCKEHPDTVGGAMMTGVREAVRIIDILRSGNDYTAEIETLEKAQRKSVPVRDEVRDLIKRLEVVELSNVL-----------ARQSLLRNMFFSAKTTVGRLHLAKELLNLPGETLKSFAGTKEGLAVLNSWILDSMGKNGTQLLRHCVHILVRVTSDLFALRLSGIGKTVKEKVCAHTSRDIRAIASQLVNVWLDLYRKEKANSGKKSLR 1277
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.935e-9 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = -1 Query: 652 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDI 795 SG DYD+L V N LFFAGEAT ++HP T+ GA LSGLREA +++ + Sbjct: 549 SGVDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREASKILHV 596
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: KDM1A_MOUSE (Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a PE=1 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 7.336e-8 Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = -1 Query: 604 SGEDYDMLGRPVENC------------LFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEG 795 SG DYD++ +P+ LFFAGE T + +P TV GA+LSGLREA R+ D F G YT +A G Sbjct: 770 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF-LGAMYTLPRQATPG 844
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: KDM1A_HUMAN (Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A PE=1 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 7.824e-8 Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = -1 Query: 604 SGEDYDMLGRPVENC------------LFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEG 795 SG DYD++ +P+ LFFAGE T + +P TV GA+LSGLREA R+ D F G YT +A G Sbjct: 769 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF-LGAMYTLPRQATPG 843
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.209e-7 Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = -1 Query: 658 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLI 795 SG DYD+L V + LFFAGEAT + +P T+ GA+LSGLREA +++ Sbjct: 551 SGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREASKIL 596
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 9.092e-7 Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = -1 Query: 658 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLI 795 SG+DYD+L V + +FFAGEAT + +P T+ GA+LSG REA ++ Sbjct: 668 SGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREAANIV 713 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000098 ID=g.arboreum_cottongen_reftransV1_0000098; Name=g.arboreum_cottongen_reftransV1_0000098; organism=Gossypium arboreum; type=contig; length=795bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|