g.arboreum_cottongen_reftransV1_0000098, g.arboreum_cottongen_reftransV1_0000098 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0000098
Unique Name	g.arboreum_cottongen_reftransV1_0000098
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	795

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0000098:1..795 . Chr12:56542967..56544014 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: V4T591_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000011mg PE=4 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 5.767e-129
Identity = 218/267 (81.65%), Postives = 234/267 (87.64%), Query Frame = -1

Query:   37 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASS--------------KRKPLKDTASGKPPLHSQHGAFESKPS 795
            SGEDYD+LGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVR+IDI TTGND+TAEVEAME AQ +SES  DEVRDI +RLEAVELSNVLYKNSLDRA +L+RE+LLQDMFFN KTTAGRLHLAK+LL LPV +LKSFAGT+EGL+TLNSW+LDSMGKDGTQLLRHCVRLLV VSTDLLAVR SGIGKTV+EK+CVHTSRDIRAIASQLVSVWLEVFRK KASS              KRK LKD +SGKPPLHS HG  ESK S
Sbjct: 1349 SGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGNDFTAEVEAMEAAQMQSESEGDEVRDITRRLEAVELSNVLYKNSLDRALILTRESLLQDMFFNAKTTAGRLHLAKELLNLPVATLKSFAGTREGLTTLNSWILDSMGKDGTQLLRHCVRLLVRVSTDLLAVRLSGIGKTVREKVCVHTSRDIRAIASQLVSVWLEVFRKEKASSRLKLLKQSTAVDSIKRKSLKDPSSGKPPLHSHHGGLESKVS 1615

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BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A067L282_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04520 PE=4 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 8.992e-124
Identity = 211/270 (78.15%), Postives = 234/270 (86.67%), Query Frame = -1

Query:   31 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKA---------------SSKRKPLKDTASGKPPLHSQHGAFESKPSLQ 795
            SGEDYD+LGRPVENCLFFAGEATCKEHPDTVGGAM+SGLREAVR+IDI  +GNDYTAEVEAME AQR SE  RDEVRDI KRLEAVELSNVLYKNSLD A +L++EALL++MFF+ KTTAGRLHLAKKLL LPVE+LKSFAGT++GL+TLNSW+LDSMGKDGTQLLRHCVRLLVLVSTDLLAVR SGIGKTVKEK+CVHTSRDIRAIASQLVSVWLEVFR+ KA               SSKRK + + A+GKPPL + HG  E+K SL+
Sbjct: 1419 SGEDYDLLGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNSGNDYTAEVEAMEAAQRHSECERDEVRDIRKRLEAVELSNVLYKNSLDGAQILTKEALLKEMFFSAKTTAGRLHLAKKLLNLPVETLKSFAGTRKGLATLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRRKKASNGGLKLLRQATAVDSSKRKSVNNPAAGKPPLRTYHGGLETKGSLE 1688

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: B9H4J5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25670g PE=4 SV=2)

HSP 1 Score: 392.504 bits (1007), Expect = 5.243e-122
Identity = 208/270 (77.04%), Postives = 230/270 (85.19%), Query Frame = -1

Query:   31 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKA---------------SSKRKPLKDTASGKPPLHSQHGAFESKPSLQ 795
            SGEDYD+LGRPVENC+FFAGEATCKEHPDTVGGAM+SGLREAVR+IDI + G D+T EVEAMEGAQR SE  RDEVRDI KRLEAVELSNVLYKNSLDRA +L+REALL+DMFF+ KT AGRLHLAKKLL LPV +LKSFAGT++GL+ LNSW+LDSMGKDGTQLLRHCVRLLVLVSTDLLAVR SGIGKTVKEK+CVHTSRDIRAIASQLVSVWLEVFR+ KA               SSKRK   ++ S KPPLH+ HGA E+  +LQ
Sbjct: 1314 SGEDYDILGRPVENCVFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILSMGTDFTTEVEAMEGAQRHSEVERDEVRDITKRLEAVELSNVLYKNSLDRARLLTREALLRDMFFSAKTIAGRLHLAKKLLNLPVGTLKSFAGTRKGLAMLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRREKASNGGVKLSRHATALESSKRKSFNNSTSRKPPLHAHHGALENSGNLQ 1583

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: B9H4J4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25670g PE=4 SV=2)

HSP 1 Score: 392.119 bits (1006), Expect = 8.537e-122
Identity = 208/270 (77.04%), Postives = 230/270 (85.19%), Query Frame = -1

Query:   31 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKA---------------SSKRKPLKDTASGKPPLHSQHGAFESKPSLQ 795
            SGEDYD+LGRPVENC+FFAGEATCKEHPDTVGGAM+SGLREAVR+IDI + G D+T EVEAMEGAQR SE  RDEVRDI KRLEAVELSNVLYKNSLDRA +L+REALL+DMFF+ KT AGRLHLAKKLL LPV +LKSFAGT++GL+ LNSW+LDSMGKDGTQLLRHCVRLLVLVSTDLLAVR SGIGKTVKEK+CVHTSRDIRAIASQLVSVWLEVFR+ KA               SSKRK   ++ S KPPLH+ HGA E+  +LQ
Sbjct: 1180 SGEDYDILGRPVENCVFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILSMGTDFTTEVEAMEGAQRHSEVERDEVRDITKRLEAVELSNVLYKNSLDRARLLTREALLRDMFFSAKTIAGRLHLAKKLLNLPVGTLKSFAGTRKGLAMLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRREKASNGGVKLSRHATALESSKRKSFNNSTSRKPPLHAHHGALENSGNLQ 1449

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: M5XL79_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000083mg PE=4 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 7.346e-121
Identity = 210/280 (75.00%), Postives = 230/280 (82.14%), Query Frame = -1

Query:    1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASS---------------KRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795
            SGEDYD+LG+PVENCLFFAGEATCKEHPDTVGGAM+SGLREAVR+IDI TTGND+TAEVEA+E  QR+S+S RDEVRDI +RL+AVELSNVLYKN         REALLQDMFFN KTT GRLHL K+LL LPVE+LKS AGTKEGL+TLNSW+LDSMGK GTQLLRHCVRLLVLVSTDLLAVR SGIGKTVKEK+CVHTSRDIRAIASQLVSVWLEVFRK KAS+               KRKP++D +SGKPPLH+ HGA E K SLQD        P
Sbjct: 1258 SGEDYDILGKPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILTTGNDHTAEVEAIEAIQRQSDSERDEVRDITRRLDAVELSNVLYKN---------REALLQDMFFNSKTTKGRLHLVKELLSLPVETLKSVAGTKEGLTTLNSWILDSMGKAGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRKEKASNGGLKLSRQAAAVDSFKRKPIRDPSSGKPPLHTFHGALEHKGSLQDSASTANHLP 1528

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: B9GQZ3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02860g PE=4 SV=2)

HSP 1 Score: 389.808 bits (1000), Expect = 1.371e-120
Identity = 209/280 (74.64%), Postives = 232/280 (82.86%), Query Frame = -1

Query:    1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKA---------------SSKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795
            SGEDYD+LGRPVEN +FFAGEATCKEHPDTVGGAM+SGLREAVR+IDI + G DYTAEVEAMEGAQR SE  RDEVRDI KRLEAVELSNVLYKNSLDRA +L+REALL+DMFF+ KTTAGRLHLAK LL LPV +LKSFAGT++GL+ LNSW+LDSMGKDGTQLLRHCVRLLVLVSTDLLAVR SGIGKTVKEK+CVHTSRDIRAIASQLVSVWLEVFR+ KA               SSKRK   ++ +GKPPL + HGA E++ + Q   P     P
Sbjct: 1313 SGEDYDILGRPVENSVFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILSMGTDYTAEVEAMEGAQRHSEVERDEVRDITKRLEAVELSNVLYKNSLDRARLLTREALLRDMFFSAKTTAGRLHLAKMLLNLPVGTLKSFAGTRKGLTMLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRREKASNGGVKFSRHATLLDSSKRKSFSNSTTGKPPLRTHHGALEARGNSQVSAPTRGPLP 1592

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A0B2PY52_GLYSO (Lysine-specific histone demethylase 1 like 1 OS=Glycine soja GN=glysoja_008626 PE=4 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 6.373e-120
Identity = 201/280 (71.79%), Postives = 236/280 (84.29%), Query Frame = -1

Query:    1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKAS---------------SKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795
            SGEDYD++GRPV+NCLFFAGEATCKEHPDTVGGAM+SGLREAVR+IDI ++GNDY AEVEA+E A+ + ++ RDEVRDIIKRL+A+ELSN++YKNSLD A +L+REALL++MFFN KTTAGRLH+AK+LL LPV +LKSFAG+KEGL+ LNSW+LDSMGKDGTQLLRHC+RLLV VSTDLLAVR SG+GKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRK KAS               SKRK +KD+A GKPPL + HG  E+K  L +P  AG   P
Sbjct: 1270 SGEDYDIIGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDILSSGNDYIAEVEALEAARGQLDTERDEVRDIIKRLDALELSNIMYKNSLDGAHILTREALLREMFFNTKTTAGRLHVAKQLLTLPVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKGKASNGGLKISRQTSAVDLSKRKSVKDSALGKPPLGTYHGTIENKGGLLNPTSAGSNSP 1549

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: K7MP01_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 6.373e-120
Identity = 201/280 (71.79%), Postives = 236/280 (84.29%), Query Frame = -1

Query:    1 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKAS---------------SKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAGKQYP 795
            SGEDYD++GRPV+NCLFFAGEATCKEHPDTVGGAM+SGLREAVR+IDI ++GNDY AEVEA+E A+ + ++ RDEVRDIIKRL+A+ELSN++YKNSLD A +L+REALL++MFFN KTTAGRLH+AK+LL LPV +LKSFAG+KEGL+ LNSW+LDSMGKDGTQLLRHC+RLLV VSTDLLAVR SG+GKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRK KAS               SKRK +KD+A GKPPL + HG  E+K  L +P  AG   P
Sbjct: 1270 SGEDYDIIGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDILSSGNDYIAEVEALEAARGQLDTERDEVRDIIKRLDALELSNIMYKNSLDGAHILTREALLREMFFNTKTTAGRLHVAKQLLTLPVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKGKASNGGLKISRQTSAVDLSKRKSVKDSALGKPPLGTYHGTIENKGGLLNPTSAGSNSP 1549

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: W9QIE9_9ROSA (Lysine-specific histone demethylase 1-1-like protein OS=Morus notabilis GN=L484_001996 PE=4 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 2.775e-119
Identity = 206/264 (78.03%), Postives = 226/264 (85.61%), Query Frame = -1

Query:   31 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKAS---------SKRKPLKDTASGKPPLHSQHGAFESKPSLQ 795
            SGEDYD+LGRPVENCLFFAGEATCKEHPDTVGGAM+SGLREAVR+IDI TTGNDYTAEVEAME   R+SE  RDEVRDI +RL+AVELSNVLYK+SLD    L+REALLQDMFFN KT A RLHL K+LL LPVE+LKSFAGTKEGLSTLNSW+LDSMGKDGTQLLRHCVRLLVLVSTDLLAVR SGIGKTVKEK+CVHTSRDIR IASQLV+VWLEVFRK KAS         S  K ++D A+ KPPLH+ HGA   + ++Q
Sbjct: 1236 SGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILTTGNDYTAEVEAMEAVHRQSEFERDEVRDIARRLDAVELSNVLYKDSLDGTQSLTREALLQDMFFNAKTNAARLHLVKELLTLPVETLKSFAGTKEGLSTLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRGIASQLVNVWLEVFRKEKASNGGLKFSRQSATKSVRDPAA-KPPLHTNHGALVDRGNIQ 1498

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Match: A0A0B2S547_GLYSO (Lysine-specific histone demethylase 1 like 1 OS=Glycine soja GN=glysoja_016831 PE=4 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 5.547e-119
Identity = 200/276 (72.46%), Postives = 235/276 (85.14%), Query Frame = -1

Query:   13 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKAS---------------SKRKPLKDTASGKPPLHSQHGAFESKPSLQDPFPAG 795
            SGEDYD++GRPV+NCLFFAGEATCKEHPDTVGGAM+SGLREAVR+IDI ++GNDY AEVEA+E A+ + ++ RDEVRDIIKRL+A+ELSN++YKNSLD A +L+REALL++MF N KTTAGRLH+AK+LL LPV +LKSFAG+KEGL+ LNSW+LDSMGKDGTQLLRHC+RLLV VSTDLLAVR SG+GKTVKEK+CVHTSRDIRAIASQLV+VWLEVFRK KAS               SKRK +KD+ASGKPPL + HG  E+K  L +P  AG
Sbjct: 1259 SGEDYDIIGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILSSGNDYIAEVEALEAARGQLDTERDEVRDIIKRLDALELSNIMYKNSLDGAQILTREALLKEMFNNTKTTAGRLHVAKQLLTLPVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKISRQTTAVDLSKRKSVKDSASGKPPLSTYHGTIENKGGLLNPTSAG 1534

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=LDL3 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 4.610e-100
Identity = 166/232 (71.55%), Postives = 200/232 (86.21%), Query Frame = -1

Query:  100 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEGAQRRSESGRDEVRDIIKRLEAVELSNVLYKNSLDRAWVLSREALLQDMFFNVKTTAGRLHLAKKLLGLPVESLKSFAGTKEGLSTLNSWMLDSMGKDGTQXXXXXXXXXXXVSTDLLAVRSSGIGKTVKEKICVHTSRDIRAIASQLVSVWLEVFRKAKASSKRKPLK 795
            SGEDYD+LGRPV+NCLFFAGEATCKEHPDTVGGAM++G+REAVR+IDI  +GNDYTAE+E +E AQR+S   RDEVRD+IKRLE VELSNVL           +R++LL++MFF+ KTT GRLHLAK+LL LP E+LKSFAGTKEGL+ LNSW+LDSMGK+GTQLLRHCV +LV V++DL A+R SGIGKTVKEK+C HTSRDIRAIASQLV+VWL+++RK KA+S +K L+
Sbjct: 1057 SGEDYDVLGRPVQNCLFFAGEATCKEHPDTVGGAMMTGVREAVRIIDILRSGNDYTAEIETLEKAQRKSVPVRDEVRDLIKRLEVVELSNVL-----------ARQSLLRNMFFSAKTTVGRLHLAKELLNLPGETLKSFAGTKEGLAVLNSWILDSMGKNGTQLLRHCVHILVRVTSDLFALRLSGIGKTVKEKVCAHTSRDIRAIASQLVNVWLDLYRKEKANSGKKSLR 1277

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.935e-9
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = -1

Query:  652 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLIDI 795
            SG DYD+L   V N LFFAGEAT ++HP T+ GA LSGLREA +++ +
Sbjct:  549 SGVDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREASKILHV 596

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: KDM1A_MOUSE (Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a PE=1 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 7.336e-8
Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = -1

Query:  604 SGEDYDMLGRPVENC------------LFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEG 795
            SG DYD++ +P+               LFFAGE T + +P TV GA+LSGLREA R+ D F  G  YT   +A  G
Sbjct:  770 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF-LGAMYTLPRQATPG 844

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: KDM1A_HUMAN (Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A PE=1 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 7.824e-8
Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = -1

Query:  604 SGEDYDMLGRPVENC------------LFFAGEATCKEHPDTVGGAMLSGLREAVRLIDIFTTGNDYTAEVEAMEG 795
            SG DYD++ +P+               LFFAGE T + +P TV GA+LSGLREA R+ D F  G  YT   +A  G
Sbjct:  769 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF-LGAMYTLPRQATPG 843

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.209e-7
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = -1

Query:  658 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLI 795
            SG DYD+L   V + LFFAGEAT + +P T+ GA+LSGLREA +++
Sbjct:  551 SGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREASKIL 596

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 9.092e-7
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = -1

Query:  658 SGEDYDMLGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRLI 795
            SG+DYD+L   V + +FFAGEAT + +P T+ GA+LSG REA  ++
Sbjct:  668 SGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREAANIV 713

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V4T591_9ROSI	5.767e-129	81.65	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067L282_JATCU	8.992e-124	78.15	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9H4J5_POPTR	5.243e-122	77.04	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9H4J4_POPTR	8.537e-122	77.04	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
M5XL79_PRUPE	7.346e-121	75.00	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9GQZ3_POPTR	1.371e-120	74.64	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A0B2PY52_GLYSO	6.373e-120	71.79	Lysine-specific histone demethylase 1 like 1 OS=Gl...	[more]
K7MP01_SOYBN	6.373e-120	71.79	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
W9QIE9_9ROSA	2.775e-119	78.03	Lysine-specific histone demethylase 1-1-like prote...	[more]
A0A0B2S547_GLYSO	5.547e-119	72.46	Lysine-specific histone demethylase 1 like 1 OS=Gl...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0000098 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 6


Match Name	E-value	Identity	Description
LDL3_ARATH	4.610e-100	71.55	Lysine-specific histone demethylase 1 homolog 3 OS...	[more]
LDL2_ARATH	1.935e-9	58.33	Lysine-specific histone demethylase 1 homolog 2 OS...	[more]
KDM1A_MOUSE	7.336e-8	43.42	Lysine-specific histone demethylase 1A OS=Mus musc...	[more]
KDM1A_HUMAN	7.824e-8	43.42	Lysine-specific histone demethylase 1A OS=Homo sap...	[more]
LDL2_ORYSJ	1.209e-7	56.52	Lysine-specific histone demethylase 1 homolog 2 OS...	[more]
LDL1_ORYSJ	9.092e-7	52.17	Lysine-specific histone demethylase 1 homolog 1 OS...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 175..209 e-value: 2.2E-4 score: 21.1
IPR017923	Transcription factor IIS, N-terminal	GENE3D	1.20.930.10		coord: 136..223 e-value: 3.7E-6 score: 26.1
IPR017923	Transcription factor IIS, N-terminal	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 137..222
IPR002937	Amine oxidase	PFAM	PF01593	Amino_oxidase	coord: 6..40 e-value: 1.6E-8 score: 34.1
IPR023753	FAD/NAD(P)-binding domain	GENE3D	3.50.50.60		coord: 2..43 e-value: 1.2E-9 score: 36.9
IPR023753	FAD/NAD(P)-binding domain	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 5..41
None	No IPR available	PANTHER	PTHR10742	AMINE OXIDASE	coord: 1..66
None	No IPR available	PANTHER	PTHR10742:SF284	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A	coord: 1..66

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0000098 ID=g.arboreum_cottongen_reftransV1_0000098; Name=g.arboreum_cottongen_reftransV1_0000098; organism=Gossypium arboreum; type=contig; length=795bp
AGGATACTGCTTTCCAGCAGGAAATGGATCCTGCAAGCTTGGTTTACTCT
CAAAAGCACCATGTTGTGAGTGTAGAGGCGGCTTTCCTGAAGCAGTATCT
TTAAGGGGTTTTCTCTTTGAAGAAGCTTTTGCCTTACGGAAGACTTCAAG
CCAAACACTAACCAGCTGGCTTGCTATAGCACGTATATCACGACTTGTAT
GCACACAAATTTTTTCCTTCACTGTTTTCCCTATGCCTGATGAACGAACT
GCAAGTAGATCAGTTGAAACAAGCACAAGAAGACGAACACAATGGCGCAA
CAACTGAGTCCCATCTTTCCCCATCGAATCCAGCATCCATGAGTTGAGTG
TGCTAAGCCCTTCCTTTGTCCCAGCAAAGGATTTCAAGGATTCAACTGGG
AGACCTAACAACTTCTTGGCTAGATGCAATCGTCCTGCAGTGGTTTTCAC
ATTAAAGAACATGTCCTGTAGTAAAGCTTCCCTGCTCAAAACCCAAGCAC
GATCCAAAGAGTTTTTGTACAAGACATTAGAAAGTTCAACTGCTTCAAGT
CTCTTAATTATGTCCCTAACTTCATCCCTTCCTGATTCTGATCGTCTCTG
TGCACCCTCCATTGCCTCTACTTCAGCTGTATAATCATTTCCAGTGGTAA
ATATGTCAATTAATCGCACAGCCTCCCGAAGTCCACTCAACATTGCACCA
CCAACTGTGTCAGGATGCTCCTTGCAGGTAGCTTCTCCAGCAAAAAACAA
GCAGTTCTCAACAGGCCTGCCCAGCATATCATAGTCTTCTCCAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR017923	TFIIS_N
IPR002937	Amino_oxidase
IPR023753	FAD/NAD-binding_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	DNA-templated transcription
GO:0055114	obsolete oxidation-reduction process

Search form

g.arboreum_cottongen_reftransV1_0000098, g.arboreum_cottongen_reftransV1_0000098 (contig) Gossypium arboreum

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