g.arboreum_cottongen_reftransV1_0012086, g.arboreum_cottongen_reftransV1_0012086 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0012086
Unique Nameg.arboreum_cottongen_reftransV1_0012086
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0012086:1..501 .
Chr6:56744299..56744799 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: R0GBX8_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10027305mg PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.577e-56
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289
            +K+  EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L
Sbjct:   49 KKRRGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 144          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: I1LCE8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.611e-56
Identity = 87/102 (85.29%), Postives = 99/102 (97.06%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSA-SHS 304
            +K+ AEEQR++SARGRE+SSD+IF+CERVCTSKRMLKKVG+FSKDPIPDTCVTVCG S+LDAC+DACARTVCVNQHQVPNWNDICLRRCQSECL+LS+ SHS
Sbjct:   25 KKRRAEEQRLQSARGRERSSDEIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGASDLDACADACARTVCVNQHQVPNWNDICLRRCQSECLKLSSQSHS 126          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A072VML2_MEDTR (Thionin-like protein OS=Medicago truncatula GN=MTR_1g073620 PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.697e-56
Identity = 85/101 (84.16%), Postives = 98/101 (97.03%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304
            +K++AEEQR+KSARGRE+SSD+IF+CERVCTSKRMLKKVG+FSKDPIPDTCVTVCGVS+LDAC++ACARTVCVNQHQVPNWND CLRRCQSECL+LS+  S
Sbjct:   25 KKRNAEEQRLKSARGRERSSDEIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGVSDLDACAEACARTVCVNQHQVPNWNDTCLRRCQSECLKLSSQSS 125          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: B9SN04_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0482930 PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.396e-56
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298
            +KK AEEQR+KSARGREKSSD+IF+CERVCTSKRMLKKVGA SKDP  DTCVTVCGVSELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECLRLS S
Sbjct:   25 KKKRAEEQRLKSARGREKSSDEIFVCERVCTSKRMLKKVGALSKDPTIDTCVTVCGVSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLRLSDS 123          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A078FNR1_BRANA (BnaC03g49450D protein OS=Brassica napus GN=BnaC03g49450D PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.408e-56
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289
            +K+  EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L
Sbjct:   25 KKRRGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.110e-59
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289
            +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L
Sbjct:   25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
R0GBX8_9BRAS3.577e-5690.63Uncharacterized protein (Fragment) OS=Capsella rub... [more]
I1LCE8_SOYBN3.611e-5685.29Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A072VML2_MEDTR3.697e-5684.16Thionin-like protein OS=Medicago truncatula GN=MTR... [more]
B9SN04_RICCO5.396e-5688.89Putative uncharacterized protein OS=Ricinus commun... [more]
A0A078FNR1_BRANA6.408e-5690.63BnaC03g49450D protein OS=Brassica napus GN=BnaC03g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5486_ARATH3.110e-5991.67Uncharacterized protein At5g64816 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35548:SF1SUBFAMILY NOT NAMEDcoord: 1..68
NoneNo IPR availablePANTHERPTHR35548FAMILY NOT NAMEDcoord: 1..68

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0012086 ID=g.arboreum_cottongen_reftransV1_0012086; Name=g.arboreum_cottongen_reftransV1_0012086; organism=Gossypium arboreum; type=contig; length=504bp
GAGGAAAAAGCATGCCGAAGAACAGAGAATTAAGAGTGCCAGGGGAAGGG
AGAAGAGCTCGGATGACATTTTCATTTGCGAGAGAGTCTGCACGTCAAAG
AGAATGTTGAAAAAGGTCGGGGCATTTTCAAAGGATCCGATCCCTGACAC
TTGTGTAACTGTTTGCGGTGTGTCCGAGCTCGATGCTTGCTCCGATGCTT
GCGCTCGTACCGTTTGTGTCAACCAACATCAGGTACCTAACTGGAATGAT
ATTTGCCTTAGAAGGTGTCAAAGTGAATGCCTTAGGTTATCTGCATCTCA
TTCTCCTTAGTGTAGTTTCGATTACCTTATGTTTAGGACACTACATTCTA
CTTTTCTCTCATAATCTATGTCGCTTCGACTTTATCTGATGCTCGTGTTT
AACACATATCCGAATATCGGGTTTTGCCTCGTCCTGCATAATGTTGTCAA
TGACTCTTAAATGCTTATTTGCAATTGGAAATGAAAATTATGCTTAGGTC
AAAA
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