g.arboreum_cottongen_reftransV1_0012086, g.arboreum_cottongen_reftransV1_0012086 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0012086
Unique Nameg.arboreum_cottongen_reftransV1_0012086
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0012086:1..501 .
Chr6:56744299..56744799 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A022QB17_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016312mg PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.062e-58
Identity = 88/101 (87.13%), Postives = 99/101 (98.02%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304
            + K+AEEQRIK+ARGREK++D+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECL++SAS S
Sbjct:   25 KAKNAEEQRIKTARGREKNADEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDVCLRRCQSECLKVSASRS 125          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: V7BGV2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G131000g PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.851e-58
Identity = 88/101 (87.13%), Postives = 99/101 (98.02%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304
            +K+HAEEQR+KSARGRE+SSD+IF+CERVCTSKRMLKKVG+FSKDPIPDTCVTVCGVS+LDAC+DACARTVCVNQHQVPNWNDICLRRCQSECL+LS+  S
Sbjct:   25 KKRHAEEQRLKSARGRERSSDEIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGVSDLDACADACARTVCVNQHQVPNWNDICLRRCQSECLKLSSQSS 125          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: F6H9J0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0069g00960 PE=4 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 5.185e-58
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304
            +++HAEEQRIKSARGREK+SD+IF+CERVCTSKRMLKKVG FSKDP  DTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECL+LSAS S
Sbjct:   25 KRRHAEEQRIKSARGREKTSDEIFVCERVCTSKRMLKKVGTFSKDPSHDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLKLSASRS 125          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: V4KJJ7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005124mg PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 7.737e-58
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298
            +K+H EE+RIKSARGREKSSD+IF+CERVC SKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+LS S
Sbjct:   25 KKRHGEEERIKSARGREKSSDEIFVCERVCVSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKLSTS 123          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: D7MSK1_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_919807 PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.634e-57
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289
            +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L
Sbjct:   25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: Q570W1_ARATH (AT5G64816 protein OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.683e-57
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289
            +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L
Sbjct:   25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A068UTB5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_55 OS=Coffea canephora GN=GSCOC_T00033783001 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.067e-57
Identity = 88/101 (87.13%), Postives = 96/101 (95.05%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304
            + + AEEQR+KSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDP PDTCVTVCGVSELDAC+DACARTVCVNQHQVPNWNDICL+RCQSECLRLS S +
Sbjct:   25 KNRRAEEQRLKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPTPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDICLKRCQSECLRLSNSSA 125          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: M5W011_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011208mg PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.525e-57
Identity = 87/99 (87.88%), Postives = 97/99 (97.98%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298
            +K+ AEEQR+KSARGREK+SD+IF+CERVCTSKRMLKK+GAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQHQVPNWND CLRRCQSECL+LS+S
Sbjct:  118 KKRRAEEQRLKSARGREKNSDEIFVCERVCTSKRMLKKLGAFSKDPIPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDKCLRRCQSECLKLSSS 216          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: M5WI70_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013390mg PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.007e-56
Identity = 87/95 (91.58%), Postives = 94/95 (98.95%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLR 286
            +K+ AEE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQHQVPNWNDICLRRCQSECL+
Sbjct:   24 KKRRAEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDICLRRCQSECLK 118          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A059BQR2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02140 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.524e-56
Identity = 87/99 (87.88%), Postives = 95/99 (95.96%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298
            RK+ AEEQR+KS RGREKSS++IF+CERVCTSKRMLKKVG+FSKDP PDTCVTVCGVS+LDAC+DACARTVCVNQHQVPNWNDICLRRCQSECLRLS S
Sbjct:   25 RKRRAEEQRLKSVRGREKSSEEIFVCERVCTSKRMLKKVGSFSKDPTPDTCVTVCGVSQLDACADACARTVCVNQHQVPNWNDICLRRCQSECLRLSNS 123          
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.110e-59
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2
Query:    2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289
            +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L
Sbjct:   25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A022QB17_ERYGU1.062e-5887.13Uncharacterized protein OS=Erythranthe guttata GN=... [more]
V7BGV2_PHAVU1.851e-5887.13Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
F6H9J0_VITVI5.185e-5889.11Putative uncharacterized protein OS=Vitis vinifera... [more]
V4KJJ7_EUTSA7.737e-5889.90Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
D7MSK1_ARALL2.634e-5791.67Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q570W1_ARATH2.683e-5791.67AT5G64816 protein OS=Arabidopsis thaliana GN=At5g6... [more]
A0A068UTB5_COFCA4.067e-5787.13Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
M5W011_PRUPE4.525e-5787.88Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
M5WI70_PRUPE1.007e-5691.58Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A059BQR2_EUCGR2.524e-5687.88Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5486_ARATH3.110e-5991.67Uncharacterized protein At5g64816 OS=Arabidopsis t... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35548:SF1SUBFAMILY NOT NAMEDcoord: 1..68
NoneNo IPR availablePANTHERPTHR35548FAMILY NOT NAMEDcoord: 1..68

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0012086 ID=g.arboreum_cottongen_reftransV1_0012086; Name=g.arboreum_cottongen_reftransV1_0012086; organism=Gossypium arboreum; type=contig; length=504bp
GAGGAAAAAGCATGCCGAAGAACAGAGAATTAAGAGTGCCAGGGGAAGGG
AGAAGAGCTCGGATGACATTTTCATTTGCGAGAGAGTCTGCACGTCAAAG
AGAATGTTGAAAAAGGTCGGGGCATTTTCAAAGGATCCGATCCCTGACAC
TTGTGTAACTGTTTGCGGTGTGTCCGAGCTCGATGCTTGCTCCGATGCTT
GCGCTCGTACCGTTTGTGTCAACCAACATCAGGTACCTAACTGGAATGAT
ATTTGCCTTAGAAGGTGTCAAAGTGAATGCCTTAGGTTATCTGCATCTCA
TTCTCCTTAGTGTAGTTTCGATTACCTTATGTTTAGGACACTACATTCTA
CTTTTCTCTCATAATCTATGTCGCTTCGACTTTATCTGATGCTCGTGTTT
AACACATATCCGAATATCGGGTTTTGCCTCGTCCTGCATAATGTTGTCAA
TGACTCTTAAATGCTTATTTGCAATTGGAAATGAAAATTATGCTTAGGTC
AAAA
back to top