g.arboreum_cottongen_reftransV1_0012086, g.arboreum_cottongen_reftransV1_0012086 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A022QB17_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016312mg PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.062e-58 Identity = 88/101 (87.13%), Postives = 99/101 (98.02%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 + K+AEEQRIK+ARGREK++D+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECL++SAS S Sbjct: 25 KAKNAEEQRIKTARGREKNADEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDVCLRRCQSECLKVSASRS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: V7BGV2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G131000g PE=4 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.851e-58 Identity = 88/101 (87.13%), Postives = 99/101 (98.02%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +K+HAEEQR+KSARGRE+SSD+IF+CERVCTSKRMLKKVG+FSKDPIPDTCVTVCGVS+LDAC+DACARTVCVNQHQVPNWNDICLRRCQSECL+LS+ S Sbjct: 25 KKRHAEEQRLKSARGRERSSDEIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGVSDLDACADACARTVCVNQHQVPNWNDICLRRCQSECLKLSSQSS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: F6H9J0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0069g00960 PE=4 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 5.185e-58 Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +++HAEEQRIKSARGREK+SD+IF+CERVCTSKRMLKKVG FSKDP DTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECL+LSAS S Sbjct: 25 KRRHAEEQRIKSARGREKTSDEIFVCERVCTSKRMLKKVGTFSKDPSHDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLKLSASRS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: V4KJJ7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005124mg PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 7.737e-58 Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298 +K+H EE+RIKSARGREKSSD+IF+CERVC SKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+LS S Sbjct: 25 KKRHGEEERIKSARGREKSSDEIFVCERVCVSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKLSTS 123
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: D7MSK1_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_919807 PE=4 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.634e-57 Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289 +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L Sbjct: 25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: Q570W1_ARATH (AT5G64816 protein OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.683e-57 Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289 +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L Sbjct: 25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A068UTB5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_55 OS=Coffea canephora GN=GSCOC_T00033783001 PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 4.067e-57 Identity = 88/101 (87.13%), Postives = 96/101 (95.05%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 + + AEEQR+KSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDP PDTCVTVCGVSELDAC+DACARTVCVNQHQVPNWNDICL+RCQSECLRLS S + Sbjct: 25 KNRRAEEQRLKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPTPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDICLKRCQSECLRLSNSSA 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: M5W011_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011208mg PE=4 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 4.525e-57 Identity = 87/99 (87.88%), Postives = 97/99 (97.98%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298 +K+ AEEQR+KSARGREK+SD+IF+CERVCTSKRMLKK+GAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQHQVPNWND CLRRCQSECL+LS+S Sbjct: 118 KKRRAEEQRLKSARGREKNSDEIFVCERVCTSKRMLKKLGAFSKDPIPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDKCLRRCQSECLKLSSS 216
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: M5WI70_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013390mg PE=4 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.007e-56 Identity = 87/95 (91.58%), Postives = 94/95 (98.95%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLR 286 +K+ AEE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDAC+DACARTVCVNQHQVPNWNDICLRRCQSECL+ Sbjct: 24 KKRRAEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDICLRRCQSECLK 118
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A059BQR2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02140 PE=4 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 2.524e-56 Identity = 87/99 (87.88%), Postives = 95/99 (95.96%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298 RK+ AEEQR+KS RGREKSS++IF+CERVCTSKRMLKKVG+FSKDP PDTCVTVCGVS+LDAC+DACARTVCVNQHQVPNWNDICLRRCQSECLRLS S Sbjct: 25 RKRRAEEQRLKSVRGREKSSEEIFVCERVCTSKRMLKKVGSFSKDPTPDTCVTVCGVSQLDACADACARTVCVNQHQVPNWNDICLRRCQSECLRLSNS 123
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.110e-59 Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289 +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L Sbjct: 25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012086 ID=g.arboreum_cottongen_reftransV1_0012086; Name=g.arboreum_cottongen_reftransV1_0012086; organism=Gossypium arboreum; type=contig; length=504bpback to top |