g.arboreum_cottongen_reftransV1_0008171, g.arboreum_cottongen_reftransV1_0008171 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008171
Unique Nameg.arboreum_cottongen_reftransV1_0008171
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0008171:1..462 .
Chr1:134866698..134868245 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: D7L9H4_ARALL (Kinase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_900118 PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.035e-53
Identity = 112/153 (73.20%), Postives = 122/153 (79.74%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            ST+DKPKLLSQLTSLL ELGLNIQEAHAFSTVDG+SLDVFVVDGW  EET  LKDAL KEILK K+Q   ++ SIS      K     +P C+EIPTDGTD WEID  QLKIE K+ASGSYGDL+RGTY SQEVAIK LKPERV  E+LREFS
Sbjct:  178 STIDKPKLLSQLTSLLGELGLNIQEAHAFSTVDGFSLDVFVVDGWSQEETDGLKDALSKEILKLKDQPGAKQKSISFFEH-DKSSNELIPACIEIPTDGTDEWEIDVTQLKIEKKVASGSYGDLHRGTYCSQEVAIKFLKPERVNNEMLREFS 329
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BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: A0A078HUX6_BRANA (BnaC03g62520D protein OS=Brassica napus GN=BnaC03g62520D PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.512e-53
Identity = 111/153 (72.55%), Postives = 124/153 (81.05%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            ST+DKPKLLSQLT+LL ELGLNIQEAHAFST DG+SLDVFVVDGW  EETK LKDAL+KEILK K+Q   R+ SI+      K     LP CVEIPTDGTD WEID +QLKIE K+A GSYG+LY+GTY SQEVAIK+LKPERV  E+LREFS
Sbjct:  250 STIDKPKLLSQLTALLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQEETKGLKDALKKEILKLKDQPSSRQKSITFFEH-DKSTNELLPACVEIPTDGTDEWEIDMKQLKIEKKVACGSYGELYKGTYCSQEVAIKILKPERVNTEMLREFS 401
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BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: U5GEU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s10830g PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.669e-53
Identity = 114/166 (68.67%), Postives = 135/166 (81.33%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAM-----TGL--------VKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            STVD+PKLLSQLTSLLAE+GLNIQEAHAFSTVDG+SLDVFVVDGW  EET+ELK+ALEKEILK+K+Q    + S+S +     TG+        +  +   L N V+IP+DGTDVWEID+ QLK+E+K+ASGSYGDLYRGTY SQEVAIKVLKPERV+ E+LREFS
Sbjct:  193 STVDRPKLLSQLTSLLAEIGLNIQEAHAFSTVDGFSLDVFVVDGWLCEETEELKNALEKEILKAKDQCFPNQLSVSLVGEQNKTGVKSLLDNVQIPSDGTLLDN-VQIPSDGTDVWEIDTSQLKVENKVASGSYGDLYRGTYCSQEVAIKVLKPERVSAEMLREFS 357
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BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: Q8RWL6_ARATH (ACT-like protein tyrosine kinase family protein OS=Arabidopsis thaliana GN=At4g35780 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.785e-53
Identity = 108/153 (70.59%), Postives = 124/153 (81.05%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            ST+D+PKLLSQLTS+L ELGLNIQEAHAFST DG+SLDVFVVDGW  EET+ LKDAL+KEI K K+Q C ++ SI+      K     LP CVEIPTDGTD WEID +QLKIE K+A GSYG+L+RGTY SQEVAIK+LKPERV  E+LREFS
Sbjct:  184 STIDRPKLLSQLTSMLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQEETEGLKDALKKEIRKFKDQPCSKQKSITFFEH-DKSTNELLPACVEIPTDGTDEWEIDMKQLKIEKKVACGSYGELFRGTYCSQEVAIKILKPERVNAEMLREFS 335
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Match: M4D216_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra010516 PE=4 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.743e-53
Identity = 110/153 (71.90%), Postives = 124/153 (81.05%), Query Frame = -3 
Query:    2 STVDKPKXXXXXXXXXXXXXLNIQEAHAFSTVDGYSLDVFVVDGWPFEETKELKDALEKEILKSKEQSCVRKSSISAMTGLVKEEAVSLPNCVEIPTDGTDVWEIDSRQLKIEHKIASGSYGDLYRGTYYSQEVAIKVLKPERVTGELLREFS 460
            ST+DKPKLLSQLT+LL ELGLNIQEAHAFST DG+SLDVFVVDGW  EET+ LKDAL+KEILK K+Q   R+ SI+      K     LP CVEIPTDGTD WEID +QLKIE K+A GSYG+LY+GTY SQEVAIK+LKPERV  E+LREFS
Sbjct:  183 STIDKPKLLSQLTALLGELGLNIQEAHAFSTADGFSLDVFVVDGWSQEETEGLKDALKKEILKLKDQPSSRQKSITFFEH-DKSTNELLPACVEIPTDGTDEWEIDMKQLKIEKKVACGSYGELYKGTYCSQEVAIKILKPERVNTEMLREFS 334
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7L9H4_ARALL2.035e-5373.20Kinase family protein OS=Arabidopsis lyrata subsp.... [more]
A0A078HUX6_BRANA2.512e-5372.55BnaC03g62520D protein OS=Brassica napus GN=BnaC03g... [more]
U5GEU0_POPTR2.669e-5368.67Uncharacterized protein OS=Populus trichocarpa GN=... [more]
Q8RWL6_ARATH2.785e-5370.59ACT-like protein tyrosine kinase family protein OS... [more]
M4D216_BRARP3.743e-5371.90Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008171 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..56
NoneNo IPR availableGENE3D3.30.200.20coord: 79..140
e-value: 2.8E-12
score: 46.0
NoneNo IPR availablePANTHERPTHR23257SERINE-THREONINE PROTEIN KINASEcoord: 1..142
NoneNo IPR availablePANTHERPTHR23257:SF492SUBFAMILY NOT NAMEDcoord: 1..142
NoneNo IPR availableSUPERFAMILY55021ACT-likecoord: 2..49
IPR002912ACT domainPROSITEPS51671ACTcoord: 1..67
score: 11.082
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 85..141

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008171 ID=g.arboreum_cottongen_reftransV1_0008171; Name=g.arboreum_cottongen_reftransV1_0008171; organism=Gossypium arboreum; type=contig; length=462bp
GAGAAAACTCTCTCAGCAATTCCCCTGTAACCCGCTCAGGCTTGAGGACT
TTAATAGCCACTTCTTGACTATAATATGTGCCTCTGTATAGATCGCCATA
GGACCCAGATGCAATCTTGTGTTCAATTTTGAGCTGCCTGGAATCAATTT
CCCACACATCAGTTCCATCGGTCGGGATTTCAACACAATTGGGTAAAGAA
ACGGCCTCTTCTTTGACAAGCCCGGTCATAGCAGATATTGAACTCTTTCT
CACACAAGATTGCTCCTTAGACTTTAAAATTTCCTTCTCCAGTGCATCTT
TGAGCTCCTTGGTTTCCTCAAAGGGCCAACCATCAACAACAAAAACATCC
AAAGAGTACCCATCAACAGTGGAAAAAGCATGAGCTTCCTGAATGTTCAA
TCCAAGCTCCGCAAGTAAAGAAGTCAACTGACTAAGGAGTTTTGGCTTGT
CAACTGTAGAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002912ACT_dom
IPR011009Kinase-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016597amino acid binding