g.arboreum_cottongen_reftransV1_0014616, g.arboreum_cottongen_reftransV1_0014616 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014616
Unique Nameg.arboreum_cottongen_reftransV1_0014616
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2068
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0014616:1..2068 .
Chr1:137483326..137489164 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy TrEMBL
Match: V4UGI4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025351mg PE=4 SV=1)

HSP 1 Score: 520.39 bits (1339), Expect = 4.364e-174
Identity = 289/480 (60.21%), Postives = 352/480 (73.33%), Query Frame = -2
Query:  331 NIQPHSTPAHHSTCL-LRVSNDQSSLKPDIETTS--NVKSESSFIFHFKTHTDSTSDHILAA--EATTDVKTETSSVSPPKLTENAKTETSSALTQSKTNYDCNPIPTCLDEPEP------LTPS--PLFSDMELLKEKVEDLKNGDNKTELPTTPVNGNNNSELSFFLDDIHFSDGNESGTEEE----QSVFMKQLEIFFKERGMEFKPPKFYGEGLNCLKLWRAVTKLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELNIPISSQSEAMNVDNQASGSGXXXXXXXXXXXRGWHSRH-FRNGEVCEPITKDKNFISQQKREKQLKSLGLLKRKKPSYLDCAVKASCTKVLKAHVETAVVDIGSPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQS 1716
            N++ HSTP      + L V  D SS  PDI+ ++  +VK+++  + +    T + +D IL++  E     K E    SP +        + +  + ++ + D         E +P       TP+     SD EL      ++K+  NK+ELPT P+N  +NS   F LD      GN+ G+E      QS FM++LE FF++R MEFKPPKFYGEGLNCLKLWRAVT+LGGY+KVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKT GGEL++P++SQS+ MN+DNQASGSGRARRDAAARAM+GWHS+H   + E+ +PI KDKN +S QK EKQLKS GL+KRKKPSY++ AVKA+ TK  K+ ++ AVVD+G PADWVKINVQ+TKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVV+LP+RIDPH TSAVVTLHGQLFVRVPFEQ+
Sbjct:   53 NLESHSTPLQEPPSISLDVLGDTSSADPDIQPSAYASVKAKTLEVPNTIEDTTAETDTILSSNSELPESSKVEAPDNSPVESKAGHAAASKAEASTAEPHADSIAELPAESEAKPSFKVQAATPNRNAAPSDTELKNVNDTEIKDKVNKSELPTLPMNEKSNSAQLFLLD------GNDEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDNQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSRGLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFEQT 526          
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy TrEMBL
Match: A0A059ARL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02198 PE=4 SV=1)

HSP 1 Score: 518.079 bits (1333), Expect = 2.040e-170
Identity = 273/408 (66.91%), Postives = 318/408 (77.94%), Query Frame = -2
Query:  331 ILAAEATTDVKTETSSVSPPKLTENAKTETSSALTQSKTNYDCNPIPTCLDEPEPLTPSPLFSDMELLKEKVEDLKNGDNKTELPTTPVNGNNNSELSFFLDDIHFSDGNESGTEEEQSVFMKQLEIFFKERGMEFKPPKFYGEGLNCLKLWRAVTKLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELNIPISSQSEAMNVDNQASGSGXXXXXXXXXXXRGWHS-RHFRNGEVCEPITKDKNFISQQKREKQLKSLGLLKRKKPSYLDCAVKASCTKVLKAHVETAVVDIGSPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQS 1551
            IL A A      +T +  P K    A+ E  + + +SK    C+ + + +++   + P+    D++   EKVE +   +++ E P   VNGN++ +  F LD+    +G+ESGTEE+QS+FMK+LE FFKER MEFKPPKFYGEGLNCLKLWRAVT+LGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERH  RGGELNI  +S +E M  DNQASGSGRA RDAAARA +GWHS R   NGEV +PI KDKN +S QKREKQLKS+G +KRKK  YL+ ++K +  K  K+ ++  VVDIG PADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPE PDNPWGVTPFKK+VNLPSRIDPHQTSAVVTLHGQLFVRVPFEQS
Sbjct:  332 ILGARAE-----DTENPEPVKPILEARDE-DTEMVESKMGAVCDDL-SSVEKDNIVAPNEASIDIKAEIEKVEPMTVEEHQAETPVAKVNGNSSLKHLFLLDE--NDEGSESGTEEDQSLFMKELESFFKERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNLRGGELNITAASPTEPMVGDNQASGSGRAPRDAAARARQGWHSQRLLGNGEVSDPIIKDKNAMSMQKREKQLKSVGPVKRKKQPYLESSIKTTRPKTSKSQLDIPVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEQPDNPWGVTPFKKIVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQS 730          
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy TrEMBL
Match: A0A0B2RU42_GLYSO (AT-rich interactive domain-containing protein 3 OS=Glycine soja GN=glysoja_003056 PE=4 SV=1)

HSP 1 Score: 508.449 bits (1308), Expect = 4.603e-169
Identity = 265/412 (64.32%), Postives = 309/412 (75.00%), Query Frame = -2
Query:  337 SSALTQSKTNYDCNPIPTCLDEPEPLTPSPLFSDMELLKEKVEDLKNGDNKTELPTTPVNGNNNSELSFFLDDIHFSDGNESGTEEEQSVFMKQLEIFFKERGMEFKPPKFYGEGLNCLKLWRAVTKLGGYDKVTSCKLWRQVGESFKPPK----------------------------------TCTTVSWTFRGFYEKALLDYERHKTRGGELNIPISSQSEAMNVDNQASGSGXXXXXXXXXXXRGWHS-RHFRNGEVCEPITKDKNFISQQKREKQLKSLGLLKRKKPS--YLDCAVKASCTKVLKAHVETAVVDIGSPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFE 1461
            +  +  SK   + +P+P   +E     P+P  ++ E++   V +++N  ++ +      NG +NS+   FLD  H  DGNESGTEEEQS FMK+LE FF+ER MEFKPPKFYGEGLNCLKLWRAVT+LGGYDKVTSCKLWRQVGESFKPP                                   TCTTVSWTFRGFYEKALLDYERHK +GGELN+P++S  E +N++NQAS SGRARRDAAARAM+GWHS R   NGEV +PI KD+N +S QKREKQLKS+ + KRKKPS  Y+D AVKA+ +K  K  ++T V+DIG PADWVK+NVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHP+NPWGVTPFKKVV+LPSRIDPHQTSAVVTLHGQLFVRVPFE
Sbjct:  142 ACGMADSKACDNGDPVPASHNELATHLPAPADTNTEIMN--VLEVENKADEKQATEPADNGKSNSKYMLFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPNFDMRASPGAAVKLCLGDLLVMGSNPETASLHMQGTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPVASHPEPINIENQASVSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINIHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFE 551          
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy TrEMBL
Match: G7K2M1_MEDTR (AT-rich interactive domain protein OS=Medicago truncatula GN=MTR_5g024920 PE=4 SV=2)

HSP 1 Score: 504.597 bits (1298), Expect = 6.431e-167
Identity = 252/357 (70.59%), Postives = 292/357 (81.79%), Query Frame = -2
Query:  331 EPLTPSPLFSDMELLKEKVEDLKNGDNKTELPTTPVNGNN--NSELSFFLDDIHFSDGNESGTEEEQSVFMKQLEIFFKERGMEFKPPKFYGEGLNCLKLWRAVTKLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELNIPISSQSEAMNVDNQASGSGXXXXXXXXXXXRGWHS-RHFRNGEVCEPITKDKNFISQQKREKQLKSLGLLKRKKPSYLDCAVKASCTKVLKAHVETAVVDIGSPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQS 1392
            +P TP P   D     + V ++K+ D + ++   PV+  N  + +  FFLD  H+ DGNESGTEE+Q+ FMK+LE FF+ER M+FK PKFYGE LNCLKLWRAV +LGGY+KVTSCKLWR VGESFKPPKTCTTVSWTFRGFYEKALLDYERH  +GGELN+PI+S  E +NV+NQ   SGR+RR AA +AMRGWHS R   NGEV +PI KD+N +S QKREKQLKS+ + KRK PSY+D AVKA+ +K  +  + TAVVDIG  ADWVK+NVQKTKDCFE+YALVPGLLREEVRVQSDPAGRLVISGEPEHP+NPWGVTPFKKVV+LPSRIDPHQTSAVVTLHGQLFVRVPFEQS
Sbjct:  248 DPTTPQPAPDDTRPEIKNVLEVKSKDGEEQV-AEPVDNENPDSPQNMFFLDADHYYDGNESGTEEDQAAFMKELENFFRERSMDFKHPKFYGEWLNCLKLWRAVMRLGGYEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPEPVNVENQGLASGRSRRYAAEQAMRGWHSQRLLGNGEVGDPIIKDRNAVSVQKREKQLKSINVPKRKSPSYMDNAVKAARSKPSRPQLGTAVVDIGPSADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQS 603          
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy TrEMBL
Match: V7CFY9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G272200g PE=4 SV=1)

HSP 1 Score: 494.197 bits (1271), Expect = 5.974e-164
Identity = 264/393 (67.18%), Postives = 308/393 (78.37%), Query Frame = -2
Query:  331 KLTENAKTETSSALTQSKTNYDCNPIPTCLDEPEPLTPSPLFSDMELLKEKVEDLKNGDNKTELPTTPV-NGNNNSELSFFLDDIHFSDGNESGTEEEQSVFMKQLEIFFKERGMEFKPPKFYGEGLNCLKLWRAVTKLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELNIPISSQSEAMNVDNQ----ASGSGXXXXXXXXXXXRGWHS-RHFRNGEVCEPITKDKNFISQQKREKQLKSLGLLKRKKPSYLDCAVKASCTKVLKAHVETAVVDIGSPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQS 1491
            ++T   K +   A +++  N D N     L+EP+  T   + +D+    +   D +N  N+ +       NGN  S+  +FLD  +  DGNESGTE+EQS FMK+LE FF+ER MEFKPPKFY EGLNCLKLWR+V +LGGYDKVT+CKLWRQVGESFKPPKTCTTVSWTFR FYEKALLDYERHKT+GGELN+PI+S SE +NV+NQ    ++ SGRARRDAAARAM+GWHS R   NGEV +PI KDK  +S QKREKQL+S+ +LKRKK S +  AVK + +K  K  ++T+VVDIG PADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEH DNPWGVTPFKKVV+LPSRID HQTSAVVTLHGQLFVRVPFEQS
Sbjct:  131 EMTVEVKPKAFEAESKTCNNGDSNSALPILNEPK--TAHAVQTDVRAEVKSGLDNENKYNEKQAAVGQADNGNLISQNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTTCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPIASNSEPVNVENQCVQGSASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKGSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQS 521          
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy Swiss-Prot
Match: ARID3_ARATH (AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=1 SV=1)

HSP 1 Score: 470.315 bits (1209), Expect = 3.841e-153
Identity = 260/444 (58.56%), Postives = 314/444 (70.72%), Query Frame = -2
Query:  334 DQSSLKPDIETTSNVKSESSFIFHFKTHTDSTSDHILAAEATTDVKTETSSVSPPKLTENAKTETSSALTQSKTNYDCNPIPTCLDEPEPLTPSPLFSDMELLKEKVEDLKNGDNKTELPTTPV-NGNNNSELSFFLDDIHFSDGNESGTEEEQSVFMKQLEIFFKERGMEFKPPKFYGEGLNCLKLWRAVTKLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELNIPISSQSEAMNVDNQASGSGXXXXXXXXXXXRGWHSRHFR-NGEVCEPITKDKNFISQQKREKQLKSL-GLLKRKKPSYLDCAVKASCTKVLKAHVETAVVDIGSPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQ 1656
            D+  +  D E T ++K +   +   K  TD+T D     +A  +  TE             + + SSAL  +  N +  P+      P P   S   S+++       DL NG +K  + T PV +G   ++ SF LDD   SDGNESGTEE+QS FMK+L+ FF+ER M+FKPPKFYGEGLNCLKLWRAVT+LGGYDKVT  KLWRQVGESF+PPKTCTTVSWTFRGFYEKALL+YERHK   GEL IP+  + E MN+DNQASGSGRARRDAA+RAM+GWHS+    NGEV +P  KDKN +  QKREKQ+ +  GLLKRK+ +        +   V K+ ++  VVD+G PADWVKINVQ+T+DCFEVYALVPGL+REEVRVQSDPAGRLVISGEPE+P NPWG TPFKKVV+LP+RIDPH TSAVVTL+GQLFVRVP EQ
Sbjct:  369 DEGMITVDAEPTEDMKLD---VPDSKLVTDTTVDSTNNKDAHVEANTE-------------RQDNSSALVLNDANNESAPVKRV---PGPYVAS---SNIKSEARGSGDLNNGVHKI-VRTPPVFDGTMRAKRSFLLDDA--SDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLELEPMNIDNQASGSGRARRDAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQKREKQIGTTPGLLKRKRAAEHGA---KNAIHVSKSMLDVTVVDVGPPADWVKINVQRTQDCFEVYALVPGLVREEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAVVTLNGQLFVRVPLEQ 784          
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy Swiss-Prot
Match: ARID5_ARATH (AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=1 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 4.550e-120
Identity = 195/315 (61.90%), Postives = 239/315 (75.87%), Query Frame = -2
Query:  334 SFFLDDIHFSDGNESGTEEEQSVFMKQLEIFFKERGMEFKPPKFYGEGLNCLKLWRAVTKLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELNIPISSQSEAMNVD-----NQASGSGXXXXXXXXXXXRGWHS-RHFRNGEVCEPITKDKNFISQQKREKQLKSLGLLKRKKPSYLDCAVKASCTKVLKAHVETAVVDIGSPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQ 1260
            ++ L D    + +E+G  ++Q  F+K++E F KE  +EFK PKFYG+ LNCLKLWRAV KLGGYD VT+ KLWRQVGESF PPKTCTTVSWTFR FYEKALL+YE+H  + GELN+P S+   +  ++     +QASGSGR RRDAAARAM+GWHS R   +GEV EPI K+K   S  K +K LK++G+ K+K  + +D        K   A V    +D+G PADWVKINV++TKDCFE++ALVPGLLREEVRVQSDPAGRLVI+G+PE  DNPWG+TPFKKVVN P+RIDP  TSAVV+LHG+LFVRVPFEQ
Sbjct:  125 TWLLSDAEAREVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHLRQNGELNLPGSASLPSSGIEKEASSHQASGSGRTRRDAAARAMQGWHSQRLLGSGEVTEPIVKEKGLNSTPK-QKNLKNIGVQKQKTTTGMDLVFSHESEKQSTAEV----IDVGPPADWVKINVRETKDCFEIFALVPGLLREEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPARIDPLHTSAVVSLHGRLFVRVPFEQ 434          
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy Swiss-Prot
Match: ARID6_ARATH (AT-rich interactive domain-containing protein 6 OS=Arabidopsis thaliana GN=ARID6 PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.556e-111
Identity = 187/332 (56.33%), Postives = 240/332 (72.29%), Query Frame = -2
Query:  334 KTELPTTPVNGNNNSELSFFLDDIHFSDGNESGTEEEQSVFMKQLEIFFKERGMEFKPPKFYGEGLNCLKLWRAVTKLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELNIP-----ISSQSEAMNVDNQASGSGXXXXXXXXXXXRGWHS-RHFRNGEVCEPITKDKNFISQQKREKQLKSLGLLKRKKPSYLDCAVKASCTKVLKAHVETAVVDIGSPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQ 1311
            + ++ +    G N  +   +L D      +E+GT  EQ  F++++E F+KE  +EFKPPKFYG+ LN LKLWRAV  LGGY+ VT+ KLWRQVGESF PPKTCTTVS+TFR FYEKALL+YE+     GELN+P     +SS  E     +Q SGSGRARRD+AARAM+GWH+ R   +GEV  P  KDK  IS  K  K+LKS+GL K K+ + +D  V     K L A     VVD+G  ADWVKINV+++KD FE++ALVPGLLR+EVR+QSDPAG++VI+G+PE  DNPWG+TPFKK+V+L +RIDP  TSAV+++HG+LF+RVPFEQ
Sbjct:   72 RVQMLSPKTEGENAKKRKTWLLDSEAQGTDEAGTPVEQVAFLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWRQVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRNNGELNLPGSTLILSSSVEKEPSSHQGSGSGRARRDSAARAMQGWHAQRLVGSGEVTAPAVKDKGLISTPKH-KKLKSIGLQKHKQQTSMDHVVTNEADKQLAAE----VVDVGPVADWVKINVKESKDSFEIFALVPGLLRKEVRIQSDPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDPLHTSAVMSMHGRLFIRVPFEQ 398          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4UGI4_9ROSI4.364e-17460.21Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A059ARL2_EUCGR2.040e-17066.91Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A0B2RU42_GLYSO4.603e-16964.32AT-rich interactive domain-containing protein 3 OS... [more]
G7K2M1_MEDTR6.431e-16770.59AT-rich interactive domain protein OS=Medicago tru... [more]
V7CFY9_PHAVU5.974e-16467.18Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0014616 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARID3_ARATH3.841e-15358.56AT-rich interactive domain-containing protein 3 OS... [more]
ARID5_ARATH4.550e-12061.90AT-rich interactive domain-containing protein 5 OS... [more]
ARID6_ARATH1.556e-11156.33AT-rich interactive domain-containing protein 6 OS... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01014ARID_2coord: 238..328
e-value: 2.6E-25
score: 100.1
NoneNo IPR availablePANTHERPTHR15348:SF6AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5-RELATEDcoord: 212..532
NoneNo IPR availablePANTHERPTHR15348AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHTcoord: 212..532
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 242..333
e-value: 7.1E-33
score: 125.2
IPR001606ARID DNA-binding domainGENE3D1.10.150.60coord: 237..345
e-value: 3.4E-30
score: 103.7
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 244..328
e-value: 1.3E-17
score: 64.0
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 241..332
score: 24.813
IPR001606ARID DNA-binding domainSUPERFAMILY46774ARID-likecoord: 236..338
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 446..530
e-value: 5.4E-7
score: 28.9
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 443..530
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 451..530
e-value: 1.5E-5
score: 24.9
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031HSP20coord: 449..530
score: 11.269

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014616 ID=g.arboreum_cottongen_reftransV1_0014616; Name=g.arboreum_cottongen_reftransV1_0014616; organism=Gossypium arboreum; type=contig; length=2068bp
TTTTTATATAGATTACCTCTTGTTATAGATATACCGTGGTTACTTGTCCA
TTACAATCAAACACATAGGAGCGTCATGTCAATTTGACAATGGAATTTTG
TCAATGAGGGGTTAATCCTATTCTCAACAGACGTCTCAAATTCCGTGACT
CAGAGGCACCTAAGATCATAATATCTGTATCTCATATAATGTAAACTATA
AAGAGGGCTTCAACTAAATGACGACATAAGTGAAACTACACTACTTTGAA
AACGAGAATAAACACTACATGGACGGACGCACAAATAAGCCACTGGCTTT
CAATCATCCACACCTTACCCCCACTACTCAGCTTTGCTCAAATGGAACAC
GTACAAACAACTGTCCATGAAGGGTTACAACCGCTGATGTCTGATGTGGA
TCAATCCTCGAGGGCAAGTTGACAACCTTTTTGAATGGTGTGACACCCCA
AGGATTATCTGGATGCTCAGGTTCACCGCTTATTACCAGGCGTCCTGCAG
GATCAGATTGAACACGCACCTCCTCACGAAGAAGGCCTGGAACTAAAGCA
TAGACCTCAAAACAATCTTTAGTTTTCTGCACATTGATCTTAACCCAATC
TGCTGGGGATCCAATATCAACCACTGCTGTCTCCACATGTGCCTTCAATA
CTTTAGTACATGAAGCCTTGACAGCACAGTCCAAATACGACGGTTTCTTG
CGTTTAAGCAGGCCCAGGCTTTTAAGCTGTTTCTCACGCTTTTGTTGAGA
AATAAAATTCTTATCCTTAGTTATTGGTTCACAGACTTCACCATTACGAA
AATGACGTGAGTGCCAACCCCTCATAGCACGTGCTGCTGCATCCCTTCGT
GCTCTACCAGATCCTGAAGCCTGATTATCAACATTCATAGCCTCTGATTG
CGATGAAATAGGTATATTAAGCTCACCCCCACGAGTCTTATGCCTTTCAT
AATCAAGGAGTGCCTTCTCATAGAAACCACGAAATGTCCATGAAACAGTA
GTACAGGTCTTTGGGGGCTTGAAAGATTCTCCAACTTGCCGCCACAATTT
ACATGAAGTTACCTTGTCATAGCCACCCAATTTAGTAACAGCTCTCCACA
ACTTAAGGCAATTCAGCCCTTCCCCATAAAATTTAGGAGGCTTAAATTCC
ATGCCTCTCTCTTTGAAGAAAATTTCCAGTTGCTTCATGAAGACTGATTG
CTCCTCTTCTGTTCCTGACTCATTGCCATCGGAAAAATGAATGTCATCCA
AAAAAAATGAGAGCTCAGAATTGTTGTTCCCATTAACAGGGGTTGTAGGC
AACTCCGTTTTATTATCCCCATTCTTCAAATCTTCCACTTTCTCCTTCAG
TAGTTCCATATCAGAAAATAATGGAGAAGGGGTAAGTGGCTCAGGTTCAT
CAAGGCAAGTTGGTATGGGGTTACAATCATAATTCGTTTTGCTTTGAGTT
AATGCAGAAGAAGTTTCAGTTTTGGCATTTTCTGTGAGTTTAGGAGGTGA
GACAGAAGAGGTTTCGGTTTTGACATCAGTTGTAGCTTCAGCAGCCAGAA
TATGATCGGAGGTAGAATCAGTGTGGGTCTTGAAATGAAAAATAAAAGAC
GATTCAGATTTCACATTGCTTGTGGTTTCTATATCAGGCTTCAGTGACGA
TTGATCATTGGATACACGAAGTAAGCACGTTGAGTGGTGAGCTGGAGTAG
AATGTGGTTGTATGTTGCTATCAGCATTGGCATGCCCTGTGTGATAGGTT
ATGGAGTTAGCCGCCATGGGCACGGGGGAAGGGGAGGGGGAAGGAGAGGA
AGGATGTTGCTGAAGCGGTGGACTAACAGGACGATCTCCATCGTTCAAGT
TAGAAGCACCTAATACTGGAACAACTAGTTCGCGCTCCTTGTTTTCATTT
TCCTTGGTGTCAGTTATCTCGAATTCCATTAATGAAAGGTTGAAAACTCC
TCCTGCTCCGTAGCTTGCTTAGGAAAATGACGATGAAGAAGGAATCTTGA
ATCCAAATCTAATTAAACCCTAATTATCTTGTGTATCCACAGAGAGCAAC
ACAACAAAACAGAATCTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding