g.arboreum_cottongen_reftransV1_0015326, g.arboreum_cottongen_reftransV1_0015326 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015326
Unique Nameg.arboreum_cottongen_reftransV1_0015326
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length775
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015326:1..775 .
Chr11:78233689..78234463 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: A0A0D3C900_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=FRS11 PE=4 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 7.491e-91
Identity = 138/173 (79.77%), Postives = 156/173 (90.17%), Query Frame = -3
Query:  255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDISPIHRNL 773
            ESHAASVLTPFAFSKLQEQLVLAAHYASFQM+DG+LVRHHTKL+GGRKVYWVP+EGIISCSC  FEFSG LCRHALRVLSTGNCFQ+PDRYLPLRWRRISTS +K  +S++ DH ER+Q  Q++VSTLV+ES+KSKERL+IATEQ SILLSRIREQP++S   RDIS + RN 
Sbjct:  507 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMEDGYLVRHHTKLDGGRKVYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQLPDRYLPLRWRRISTSFSKTFRSNADDHGERVQFLQNLVSTLVSESSKSKERLEIATEQTSILLSRIREQPISSLSLRDISSVQRNF 679          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: Q1SKU8_MEDTR (FAR1; Zinc finger, SWIM-type OS=Medicago truncatula GN=MtrDRAFT_AC140549g37v2 PE=4 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.911e-90
Identity = 140/173 (80.92%), Postives = 158/173 (91.33%), Query Frame = -3
Query:  255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDISPIHRNL 773
            ESHAA+VLTPFAFSKLQEQLVLAAHYASF ++DGFLVRHHTK+EGGR+VYW P EGIISCSCHQFEFSGILCRH+LRVLSTGNCFQIPD YLP+RWRRIS   +K+ Q++ SDH ER++LFQ+MVS+L+TESAKSKERLDIATEQVSILLSRIREQP++ Q ARD S I RNL
Sbjct:  520 ESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDIATEQVSILLSRIREQPISLQCARDTSTI-RNL 691          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: A0A022R4W6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a026301mg PE=4 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.109e-85
Identity = 135/176 (76.70%), Postives = 153/176 (86.93%), Query Frame = -3
Query:  255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDG-FLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSS--SDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDISPIHRNL 773
            ESHA+SVLTPFAFSKLQEQLV+AAHYAS+QMD G FLVRHHTKLEGGRKVYW PREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIP+RYL LRWRRIS  P      ++  SD  +R+QL QSMV++LV ESAKSKER+D ATEQVSI+LSR+REQPV++ G R++S  HR+L
Sbjct:  508 ESHASSVLTPFAFSKLQEQLVMAAHYASYQMDGGDFLVRHHTKLEGGRKVYWAPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPERYLLLRWRRISLPPGGRQPQTAPRSDQTDRVQLLQSMVTSLVAESAKSKERMDFATEQVSIILSRVREQPVSNLGLRELSSTHRSL 683          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: D7KKK5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_888253 PE=4 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 9.164e-74
Identity = 125/175 (71.43%), Postives = 143/175 (81.71%), Query Frame = -3
Query:  255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIRE--QPVASQGARDISPIHRNL 773
            ES AASVLTP AFS LQ QLVLAA YASF+MDD +LVRHHTKL GGRKVYWVP+EGIISC+C  F+FSG LCRHAL VLSTGN F +PDRYLPLRWRRISTS  K  +S++ DH ER+QL Q++VSTLV+E +KSKERL+IATEQ SILLS  RE  QP++S   RDIS + RN 
Sbjct:  720 ESLAASVLTPSAFSNLQAQLVLAALYASFEMDDWYLVRHHTKLSGGRKVYWVPQEGIISCNCQLFDFSGFLCRHALHVLSTGNYFPVPDRYLPLRWRRISTSFGKTFRSNAEDHGERVQLLQNLVSTLVSEPSKSKERLEIATEQTSILLSSNREQRQPISSLALRDISTVQRNF 894          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: S8CS58_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_07072 PE=4 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.098e-72
Identity = 124/172 (72.09%), Postives = 140/172 (81.40%), Query Frame = -3
Query:  282 ESHAASVLTPFAFSKLQEQLVLAAHYASFQM-DDGFLVRHHTKLEG-GRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLH----QSSSSD--HMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGAR 773
            ESHAASVLTPFAFSKLQEQLV AAHYAS+Q  DD FLVRHHTKLEG GRKVYW PREGI+ CSCH FEFSGILCRHALRVLSTGNCFQIP+RYLP RWRR+S      H    Q  + D  H +R+Q+ Q+MVS+LV+ESAKSKERLD+ATE VS LLS+IR+ P++  G R
Sbjct:  500 ESHAASVLTPFAFSKLQEQLVSAAHYASYQTEDDWFLVRHHTKLEGNGRKVYWAPREGIVCCSCHHFEFSGILCRHALRVLSTGNCFQIPERYLPTRWRRVSFHHGSRHHLQLQDHNGDHHHRDRVQMLQTMVSSLVSESAKSKERLDLATEHVSALLSQIRDCPLSLTGFR 671          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS11_ARATH (Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.559e-93
Identity = 142/174 (81.61%), Postives = 157/174 (90.23%), Query Frame = -3
Query:  255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDI-SPIHRNL 773
            ESHAASVLTPFAFSKLQEQLVLAAHYASFQMD+G+LVRHHTKL+GGRKVYWVP+EGIISCSC  FEFSG LCRHALRVLSTGNCFQ+PDRYLPLRWRRISTS +K  +S++ DH ER+QL Q++VSTLV+ESAKSKERLDIATEQ SILLSRIREQPV+S   RDI S + RN 
Sbjct:  507 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDEGYLVRHHTKLDGGRKVYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQVPDRYLPLRWRRISTSFSKTFRSNAEDHGERVQLLQNLVSTLVSESAKSKERLDIATEQTSILLSRIREQPVSSLAIRDISSSVQRNF 680          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS10_ARATH (Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.568e-40
Identity = 75/161 (46.58%), Postives = 103/161 (63.98%), Query Frame = -3
Query:  294 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDG-FLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVAS 773
            E HA  +LTP+AFS LQ ++VL+  YA  +M +G F+V H+ K+EG   V W P    I CSC +FE SGILCRH LRVL+  NCF IP++Y  LRWR+ S   A  +Q+      +  Q F S+  TL+TES  SK+RLD A +++S+L+ R+R    A+
Sbjct:  520 EDHARGILTPYAFSVLQNEMVLSVQYAVAEMANGPFIVHHYKKMEGECCVIWNPENEEIQCSCKEFEHSGILCRHTLRVLTVKNCFHIPEQYFLLRWRQESPHVATENQNGQGIGDDSAQTFHSLTETLLTESMISKDRLDYANQELSLLIDRVRNTAPAN 680          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.522e-13
Identity = 58/179 (32.40%), Postives = 81/179 (45.25%), Query Frame = -3
Query:  255 ESHAASVLTPFAFSKLQEQLVLA-AHYASFQMDDGFLVRHHT-KLEGGRKVYWVP---REGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQS-SSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDISPIHRNL 773
            E+ AA++ T   F K QE+LV   AH A+   DDG          E   K Y V     E   +CSC  FE SGILCRH L V +  N   +P  Y+  RW R + S  +L +  S + H   I  +      L  E+ K  E   I  E  +I L ++RE      G + +S + + +
Sbjct:  474 ENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSMVELDEHVSENGHDSSIHRYNH----LCREAIKYAEEGAITAEAYNIALGQLRE------GGKKVSVVRKRI 642          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.529e-11
Identity = 51/154 (33.12%), Postives = 69/154 (44.81%), Query Frame = -3
Query:  348 ESHAASVLTPFAFSKLQEQLVLAAHY-ASFQMDDGFLVRHHTKLEG-GRKVYWVP---REGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPA-----KLHQSSS--SDHMERIQLFQSMVSTLVTESAKSKERLDIA 773
            E  A+ + T   F + QE+LV    + AS   DDG LV +     G   K ++V     E   +CSC  FEFSGI+CRH L V    N   +P  Y+  RW R + S        LH  ++    H  R    +   S  V E+ KS    D+A
Sbjct:  529 EKQASELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYNLHAYANYLESHTVRYNTLRHKASNFVQEAGKSLYTCDVA 682          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS9_ARATH (Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 8.981e-11
Identity = 54/174 (31.03%), Postives = 78/174 (44.83%), Query Frame = -3
Query:  282 ESHAASVLTPFAFSKLQEQLV-LAAHYASFQMDDG----FLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDH-MERIQL-FQSM---VSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGAR 773
            E  AAS+ T  AF K QE+ V   A  A+   D G    + V    ++  G  V +   E   +CSC  FE+SGI+CRH L V S  N   +P RYL  RW + +       Q   S+   E + L F S+    +  V E AKS +   +A + +     ++      + G R
Sbjct:  294 EKQAASLYTRAAFIKFQEEFVETLAIPANIISDSGTHTTYRVAKFGEVHKGHTVSFDSLEVKANCSCQMFEYSGIICRHILAVFSAKNVLALPSRYLLRRWTKEAKIRGTEEQPEFSNGCQESLNLCFNSLRQEATKYVEEGAKSIQIYKVAMDALDEAAKKVAAASNRTPGTR 467          
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.129e-7
Identity = 48/175 (27.43%), Postives = 76/175 (43.43%), Query Frame = -3
Query:  315 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMD----DG----FLVRHHTKLEGGRK------VYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSS-----DHMERIQLFQSMVST---LVTESAKSKERLDIATEQVSILLSRI 773
            E+  + + T   F K Q  + +   Y+ F       DG    FLV+   + E  R+      V +    G + C C  F F G LCRHAL VL+     +IP RY+  RWR+      +LH + +      D  +R+Q F  +      +V E A S +   +A + +   L ++
Sbjct:  526 ETQLSRIYTRDMFKKFQ--IEVEEMYSCFSTTQVHVDGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPLRYILPRWRK---DYKRLHFADNGLTGFVDGTDRVQWFDQLYKNSLQVVEEGAVSLDHYKVAMQVLQESLDKV 695          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D3C900_BRAOL7.491e-9179.77Uncharacterized protein OS=Brassica oleracea var. ... [more]
Q1SKU8_MEDTR1.911e-9080.92FAR1; Zinc finger, SWIM-type OS=Medicago truncatul... [more]
A0A022R4W6_ERYGU1.109e-8576.70Uncharacterized protein OS=Erythranthe guttata GN=... [more]
D7KKK5_ARALL9.164e-7471.43Putative uncharacterized protein OS=Arabidopsis ly... [more]
S8CS58_9LAMI4.098e-7272.09Uncharacterized protein OS=Genlisea aurea GN=M569_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FRS11_ARATH1.559e-9381.61Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis th... [more]
FRS10_ARATH2.568e-4046.58Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabi... [more]
FRS3_ARATH1.522e-1332.40Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis tha... [more]
FRS5_ARATH2.529e-1133.12Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FRS9_ARATH8.981e-1131.03Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis tha... [more]
FRS6_ARATH3.129e-727.43Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis tha... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 28..55
e-value: 4.2E-6
score: 36.3
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 23..51
e-value: 3.1E-8
score: 33.0
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 20..53
score: 9.705
IPR031052FHY3/FAR1 familyPANTHERPTHR31669FAMILY NOT NAMEDcoord: 9..139
NoneNo IPR availablePANTHERPTHR31669:SF34PROTEIN FAR1-RELATED SEQUENCE 11coord: 9..139

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015326 ID=g.arboreum_cottongen_reftransV1_0015326; Name=g.arboreum_cottongen_reftransV1_0015326; organism=Gossypium arboreum; type=contig; length=775bp
ATTTAGAAATCATCAAGAACATATCCTCCCCTTCCCTCCACCAAAGTCTA
GGTACTGAAAACAAGCATTGACAGGAACGGACAAAACGATGCCTATTGAG
TGCAACTTATGTACTTTGATTCCATAACTACAAAATTACTATGCAAATGC
CGAATCCTTCATCGACTCTTGCATTTCTAACCTCAACAGTGATTTTTTTT
CCTCTCCTCCAAATTTCTTATATTGCCTTCTGCACTAATTGCTTAAGATT
TTCAAAGATTTCTATGAATAGGGGAAATATCCCGCGCACCTTGTGATGCA
ACTGGCTGCTCTCTTATGCGAGACAAAAGAATGGAGACTTGCTCGGTGGC
AATATCCAACCTCTCCTTTGACTTGGCAGATTCAGTTACAAGGGTTGATA
CCATACTCTGAAACAGTTGAATCCGCTCCATATGATCACTTGAAGAACTT
TGGTGAAGCTTTGCCGGTGATGTGCTGATCCTTCTCCACCGTAAGGGAAG
ATATCTGTCTGGAATCTGAAAGCAATTTCCTGTCGAGAGAACTCGAAGGG
CATGGCGGCAAAGAATTCCGGAGAACTCAAACTGATGGCAGCTGCAACTT
ATAATGCCTTCTCGTGGAACCCAATACACTTTCCGGCCTCCTTCGAGTTT
TGTATGATGTCTTACGAGGAAACCATCATCCATCTGAAATGATGCATAGT
GAGCAGCTAAAACTAGTTGCTCTTGAAGCTTGGAGAAGGCAAAAGGAGTG
AGGACAGAGGCAGCATGAGATTCCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006564Znf_PMZ
IPR007527Znf_SWIM
IPR031052FHY3/FAR1
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription