g.arboreum_cottongen_reftransV1_0015326, g.arboreum_cottongen_reftransV1_0015326 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: A0A0D3C900_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=FRS11 PE=4 SV=1) HSP 1 Score: 293.893 bits (751), Expect = 7.491e-91 Identity = 138/173 (79.77%), Postives = 156/173 (90.17%), Query Frame = -3 Query: 255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDISPIHRNL 773 ESHAASVLTPFAFSKLQEQLVLAAHYASFQM+DG+LVRHHTKL+GGRKVYWVP+EGIISCSC FEFSG LCRHALRVLSTGNCFQ+PDRYLPLRWRRISTS +K +S++ DH ER+Q Q++VSTLV+ES+KSKERL+IATEQ SILLSRIREQP++S RDIS + RN Sbjct: 507 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMEDGYLVRHHTKLDGGRKVYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQLPDRYLPLRWRRISTSFSKTFRSNADDHGERVQFLQNLVSTLVSESSKSKERLEIATEQTSILLSRIREQPISSLSLRDISSVQRNF 679
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: Q1SKU8_MEDTR (FAR1; Zinc finger, SWIM-type OS=Medicago truncatula GN=MtrDRAFT_AC140549g37v2 PE=4 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 1.911e-90 Identity = 140/173 (80.92%), Postives = 158/173 (91.33%), Query Frame = -3 Query: 255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDISPIHRNL 773 ESHAA+VLTPFAFSKLQEQLVLAAHYASF ++DGFLVRHHTK+EGGR+VYW P EGIISCSCHQFEFSGILCRH+LRVLSTGNCFQIPD YLP+RWRRIS +K+ Q++ SDH ER++LFQ+MVS+L+TESAKSKERLDIATEQVSILLSRIREQP++ Q ARD S I RNL Sbjct: 520 ESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDIATEQVSILLSRIREQPISLQCARDTSTI-RNL 691
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: A0A022R4W6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a026301mg PE=4 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 1.109e-85 Identity = 135/176 (76.70%), Postives = 153/176 (86.93%), Query Frame = -3 Query: 255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDG-FLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSS--SDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDISPIHRNL 773 ESHA+SVLTPFAFSKLQEQLV+AAHYAS+QMD G FLVRHHTKLEGGRKVYW PREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIP+RYL LRWRRIS P ++ SD +R+QL QSMV++LV ESAKSKER+D ATEQVSI+LSR+REQPV++ G R++S HR+L Sbjct: 508 ESHASSVLTPFAFSKLQEQLVMAAHYASYQMDGGDFLVRHHTKLEGGRKVYWAPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPERYLLLRWRRISLPPGGRQPQTAPRSDQTDRVQLLQSMVTSLVAESAKSKERMDFATEQVSIILSRVREQPVSNLGLRELSSTHRSL 683
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: D7KKK5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_888253 PE=4 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 9.164e-74 Identity = 125/175 (71.43%), Postives = 143/175 (81.71%), Query Frame = -3 Query: 255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIRE--QPVASQGARDISPIHRNL 773 ES AASVLTP AFS LQ QLVLAA YASF+MDD +LVRHHTKL GGRKVYWVP+EGIISC+C F+FSG LCRHAL VLSTGN F +PDRYLPLRWRRISTS K +S++ DH ER+QL Q++VSTLV+E +KSKERL+IATEQ SILLS RE QP++S RDIS + RN Sbjct: 720 ESLAASVLTPSAFSNLQAQLVLAALYASFEMDDWYLVRHHTKLSGGRKVYWVPQEGIISCNCQLFDFSGFLCRHALHVLSTGNYFPVPDRYLPLRWRRISTSFGKTFRSNAEDHGERVQLLQNLVSTLVSEPSKSKERLEIATEQTSILLSSNREQRQPISSLALRDISTVQRNF 894
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Match: S8CS58_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_07072 PE=4 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 4.098e-72 Identity = 124/172 (72.09%), Postives = 140/172 (81.40%), Query Frame = -3 Query: 282 ESHAASVLTPFAFSKLQEQLVLAAHYASFQM-DDGFLVRHHTKLEG-GRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLH----QSSSSD--HMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGAR 773 ESHAASVLTPFAFSKLQEQLV AAHYAS+Q DD FLVRHHTKLEG GRKVYW PREGI+ CSCH FEFSGILCRHALRVLSTGNCFQIP+RYLP RWRR+S H Q + D H +R+Q+ Q+MVS+LV+ESAKSKERLD+ATE VS LLS+IR+ P++ G R Sbjct: 500 ESHAASVLTPFAFSKLQEQLVSAAHYASYQTEDDWFLVRHHTKLEGNGRKVYWAPREGIVCCSCHHFEFSGILCRHALRVLSTGNCFQIPERYLPTRWRRVSFHHGSRHHLQLQDHNGDHHHRDRVQMLQTMVSSLVSESAKSKERLDLATEHVSALLSQIRDCPLSLTGFR 671
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS11_ARATH (Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 1.559e-93 Identity = 142/174 (81.61%), Postives = 157/174 (90.23%), Query Frame = -3 Query: 255 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDI-SPIHRNL 773 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMD+G+LVRHHTKL+GGRKVYWVP+EGIISCSC FEFSG LCRHALRVLSTGNCFQ+PDRYLPLRWRRISTS +K +S++ DH ER+QL Q++VSTLV+ESAKSKERLDIATEQ SILLSRIREQPV+S RDI S + RN Sbjct: 507 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDEGYLVRHHTKLDGGRKVYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQVPDRYLPLRWRRISTSFSKTFRSNAEDHGERVQLLQNLVSTLVSESAKSKERLDIATEQTSILLSRIREQPVSSLAIRDISSSVQRNF 680
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS10_ARATH (Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 2.568e-40 Identity = 75/161 (46.58%), Postives = 103/161 (63.98%), Query Frame = -3 Query: 294 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMDDG-FLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVAS 773 E HA +LTP+AFS LQ ++VL+ YA +M +G F+V H+ K+EG V W P I CSC +FE SGILCRH LRVL+ NCF IP++Y LRWR+ S A +Q+ + Q F S+ TL+TES SK+RLD A +++S+L+ R+R A+ Sbjct: 520 EDHARGILTPYAFSVLQNEMVLSVQYAVAEMANGPFIVHHYKKMEGECCVIWNPENEEIQCSCKEFEHSGILCRHTLRVLTVKNCFHIPEQYFLLRWRQESPHVATENQNGQGIGDDSAQTFHSLTETLLTESMISKDRLDYANQELSLLIDRVRNTAPAN 680
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.522e-13 Identity = 58/179 (32.40%), Postives = 81/179 (45.25%), Query Frame = -3 Query: 255 ESHAASVLTPFAFSKLQEQLVLA-AHYASFQMDDGFLVRHHT-KLEGGRKVYWVP---REGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQS-SSSDHMERIQLFQSMVSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGARDISPIHRNL 773 E+ AA++ T F K QE+LV AH A+ DDG E K Y V E +CSC FE SGILCRH L V + N +P Y+ RW R + S +L + S + H I + L E+ K E I E +I L ++RE G + +S + + + Sbjct: 474 ENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSMVELDEHVSENGHDSSIHRYNH----LCREAIKYAEEGAITAEAYNIALGQLRE------GGKKVSVVRKRI 642
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.529e-11 Identity = 51/154 (33.12%), Postives = 69/154 (44.81%), Query Frame = -3 Query: 348 ESHAASVLTPFAFSKLQEQLVLAAHY-ASFQMDDGFLVRHHTKLEG-GRKVYWVP---REGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPA-----KLHQSSS--SDHMERIQLFQSMVSTLVTESAKSKERLDIA 773 E A+ + T F + QE+LV + AS DDG LV + G K ++V E +CSC FEFSGI+CRH L V N +P Y+ RW R + S LH ++ H R + S V E+ KS D+A Sbjct: 529 EKQASELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYNLHAYANYLESHTVRYNTLRHKASNFVQEAGKSLYTCDVA 682
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS9_ARATH (Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 8.981e-11 Identity = 54/174 (31.03%), Postives = 78/174 (44.83%), Query Frame = -3 Query: 282 ESHAASVLTPFAFSKLQEQLV-LAAHYASFQMDDG----FLVRHHTKLEGGRKVYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSSDH-MERIQL-FQSM---VSTLVTESAKSKERLDIATEQVSILLSRIREQPVASQGAR 773 E AAS+ T AF K QE+ V A A+ D G + V ++ G V + E +CSC FE+SGI+CRH L V S N +P RYL RW + + Q S+ E + L F S+ + V E AKS + +A + + ++ + G R Sbjct: 294 EKQAASLYTRAAFIKFQEEFVETLAIPANIISDSGTHTTYRVAKFGEVHKGHTVSFDSLEVKANCSCQMFEYSGIICRHILAVFSAKNVLALPSRYLLRRWTKEAKIRGTEEQPEFSNGCQESLNLCFNSLRQEATKYVEEGAKSIQIYKVAMDALDEAAKKVAAASNRTPGTR 467
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Match: FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 3.129e-7 Identity = 48/175 (27.43%), Postives = 76/175 (43.43%), Query Frame = -3 Query: 315 ESHAASVLTPFAFSKLQEQLVLAAHYASFQMD----DG----FLVRHHTKLEGGRK------VYWVPREGIISCSCHQFEFSGILCRHALRVLSTGNCFQIPDRYLPLRWRRISTSPAKLHQSSSS-----DHMERIQLFQSMVST---LVTESAKSKERLDIATEQVSILLSRI 773 E+ + + T F K Q + + Y+ F DG FLV+ + E R+ V + G + C C F F G LCRHAL VL+ +IP RY+ RWR+ +LH + + D +R+Q F + +V E A S + +A + + L ++ Sbjct: 526 ETQLSRIYTRDMFKKFQ--IEVEEMYSCFSTTQVHVDGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPLRYILPRWRK---DYKRLHFADNGLTGFVDGTDRVQWFDQLYKNSLQVVEEGAVSLDHYKVAMQVLQESLDKV 695 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0015326 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015326 ID=g.arboreum_cottongen_reftransV1_0015326; Name=g.arboreum_cottongen_reftransV1_0015326; organism=Gossypium arboreum; type=contig; length=775bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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