g.arboreum_cottongen_reftransV1_0018382, g.arboreum_cottongen_reftransV1_0018382 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018382
Unique Nameg.arboreum_cottongen_reftransV1_0018382
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0018382:1..331 .
Chr9:89763607..89763937 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY4_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.892e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY8_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.952e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVZ6_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.074e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVX8_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.074e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW01_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.136e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVY6_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.136e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVX9_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.136e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW08_9ERIC (Phytochrome E (Fragment) OS=Pieris japonica GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.198e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KW05_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.198e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Match: D2KVZ9_9ERIC (Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.198e-39
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS+R +E+SG K L   Q +D++ +G++E+SSVA EMVRLIET +AP+FGVD+AG+INGWNAK+ ELTGLQA  AIGKSL +++V EDS+ V +NL+ RA 
Sbjct:  547 IHSLQLIMRDSYRMIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAPIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYE_IPONI (Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.049e-37
Identity = 65/110 (59.09%), Postives = 86/110 (78.18%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLIMRDS + + E+  K ++  QQND++     E+SS+A E+VRL+ET T P+FGVD++G+INGWNAK+AELTGLQA+ AIGK L D+V HEDS E +K L+ RAL
Sbjct:  557 IHSLQLIMRDSLQGIGENYMKSVSSPQQNDSDGVRFYELSSMALELVRLVETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIGKYLIDDVTHEDSHETFKALMCRAL 666
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_SORBI (Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.977e-34
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEE--SGSKELACGQQN--DTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+RDSFRD  E  S SK +  GQ    + E  GINE+SSVA EMVRLIET T P+F VDT G INGWNAK+AELTGL  + A+GKSL ++++ ++S+E+ + L+ RAL
Sbjct:  623 IHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIVEKLLSRAL 736
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_SOLTU (Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.043e-33
Identity = 63/110 (57.27%), Postives = 82/110 (74.55%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+RDSF+D E S SK +      + E +GI+E+SSVA EMVRLIET TAP+F VD  G INGWNAKVAELTG+  + A+GKSL  ++V+++SQE  + L+  AL
Sbjct:  580 IHSLQLILRDSFKDAEASNSKAIVHAHLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTGVSVEEAMGKSLVHDLVYKESQETAEKLLYNAL 689
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSI (Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.458e-33
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEE--SGSKELACGQQN--DTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+RDSFRD  E  S SK +  GQ    + E  GI+E+SSVA EMVRLIET T P+F VDT G INGWNAKVAELTGL  + A+GKSL ++++ ++S+E    L+ RAL
Sbjct:  616 IHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLLSRAL 729
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSJ (Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.595e-33
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEE--SGSKELACGQQN--DTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+RDSFRD  E  S SK +  GQ    + E  GI+E+SSVA EMVRLIET T P+F VDT G INGWNAKVAELTGL  + A+GKSL ++++ ++S+E    L+ RAL
Sbjct:  616 IHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLLSRAL 729
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY_ADICA (Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.117e-32
Identity = 59/110 (53.64%), Postives = 85/110 (77.27%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R SF+D+++S +K +   + ND + +G++E+S+VA EMVRLIET TAP+  VD  G+INGWN KVAELTGL  + A+GKSLA E+VHE+S+ + + ++  AL
Sbjct:  565 IHSLQLILRGSFQDIDDSNTKTMIHARLNDLKLQGLDELSTVASEMVRLIETATAPILAVDGQGLINGWNGKVAELTGLSFETAMGKSLAKELVHEESKTIVERVLHLAL 674
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_TOBAC (Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.679e-32
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+ LI+RDSF+D E S SK +   Q  + E +GI+E+SSVA EMVRLIET TAP+F VD  G INGWNAKVAELT L  + A+GKSL  ++VH++SQE  + L+  AL
Sbjct:  583 IHSL-LILRDSFKDAEASNSKAVVHAQLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTDLSVEEAMGKSLVHDLVHKESQETAEKLLFNAL 691
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB_SOYBN (Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.285e-31
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = -1 
Query:    8 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGR 331
            IHS+QLI+RDSF+D E   SK +     ++ E +G++E+SSVA EMVRLIET TAP+F VD  G +NGWNAKV+ELTGL  + A+GKSL  ++V ++S+E    L+ R
Sbjct:  605 IHSLQLILRDSFKDAEHRNSKAVVDPHVSEQELQGVDELSSVAREMVRLIETATAPIFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVHDLVFKESEETVNKLLSR 712
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHYB1_SOLLC (Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.123e-31
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKEL--ACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+RDSF+D E S SK +  A G+    E +GI+E+SSVA EMVRLIET TAP+FGVD  G INGWN KV ELTGL A+ A GKSL  ++++++SQE  + L+  AL
Sbjct:  582 IHSLQLILRDSFKDAEASNSKAIVHALGEM---ELQGIDELSSVAREMVRLIETATAPIFGVDVNGRINGWNEKVVELTGLSAEEAKGKSLVHDLLYKESQESAEKLLYNAL 690
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Match: PHY_PINSY (Phytochrome OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.308e-30
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = -1 
Query:    2 IHSIQLIMRDSFRDMEESGSKELACGQQNDTETEGINEISSVAYEMVRLIETGTAPVFGVDTAGIINGWNAKVAELTGLQADHAIGKSLADEVVHEDSQEVYKNLIGRAL 331
            IHS+QLI+R SFRD+++SG+K +   + N    +GI+E+SSVA EMVRLIET TAP+  VD  G++NGWNAKVAELTGL    A+G SL  ++V E S E  + ++  AL
Sbjct:  580 IHSLQLILRCSFRDIDDSGTKTMVHSRLNYLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKMLHNAL 689
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D2KVY4_9ERIC5.892e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVY8_9ERIC5.952e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVZ6_9ERIC6.074e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVX8_9ERIC6.074e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KW01_9ERIC6.136e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVY6_9ERIC6.136e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVX9_9ERIC6.136e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KW08_9ERIC6.198e-3962.73Phytochrome E (Fragment) OS=Pieris japonica GN=PHY... [more]
D2KW05_9ERIC6.198e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]
D2KVZ9_9ERIC6.198e-3962.73Phytochrome E (Fragment) OS=Pieris nana GN=PHYE PE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PHYE_IPONI7.049e-3759.09Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1[more]
PHYB_SORBI2.977e-3457.89Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2[more]
PHYB_SOLTU1.043e-3357.27Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV... [more]
PHYB_ORYSI3.458e-3357.89Phytochrome B OS=Oryza sativa subsp. indica GN=PHY... [more]
PHYB_ORYSJ3.595e-3357.89Phytochrome B OS=Oryza sativa subsp. japonica GN=P... [more]
PHY_ADICA1.117e-3253.64Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1... [more]
PHYB_TOBAC2.679e-3258.18Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV... [more]
PHYB_SOYBN1.285e-3153.70Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1[more]
PHYB1_SOLLC2.123e-3158.04Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE... [more]
PHY_PINSY1.308e-3053.64Phytochrome OS=Pinus sylvestris PE=2 SV=1[more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001294PhytochromePRINTSPR01033PHYTOCHROMEcoord: 57..72
score: 80.13
coord: 38..54
score: 73.15
IPR000014PAS domainSMARTSM00091pas_2coord: 37..103
e-value: 2.8E-5
score: 33.5
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 42..102
e-value: 1.7E-8
score: 32.6
IPR000014PAS domainPROSITEPS50112PAScoord: 35..103
score: 19.02
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 41..101
IPR013767PAS foldPFAMPF00989PAScoord: 38..98
e-value: 3.6E-16
score: 59.0
NoneNo IPR availableGENE3D3.30.450.20coord: 42..96
e-value: 2.8E-10
score: 39.6
NoneNo IPR availablePANTHERPTHR24423TWO-COMPONENT SENSOR HISTIDINE KINASEcoord: 35..103
NoneNo IPR availablePANTHERPTHR24423:SF563PHYTOCHROME Ecoord: 35..103

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018382 ID=g.arboreum_cottongen_reftransV1_0018382; Name=g.arboreum_cottongen_reftransV1_0018382; organism=Gossypium arboreum; type=contig; length=331bp
GCAAAGCTCTTCCTATGAGATTTTTGTACACTTCTTGAGAATCTTCGTGA
ACAACTTCATCAGCTAGGGATTTCCCGATTGCATGATCGGCTTGTAAACC
TGTCAATTCTGCAACTTTTGCATTCCAACCATTTATGATACCGGCTGTAT
CAACTCCAAAGACTGGAGCTGTTCCAGTCTCAATCAATCTAACCATTTCA
TATGCCACTGAGCTGATTTCATTGATTCCCTCCGTCTCAGTATCATTTTG
CTGGCCACAAGCTAACTCCTTGGAGCCACTCTCTTCCATGTCTCGAAATG
AATCTCTCATTATTAGCTGTATAGAGTGAAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001294Phytochrome
IPR000014PAS
IPR013767PAS_fold
Vocabulary: Biological Process
TermDefinition
GO:0009584detection of visible light
GO:0006355regulation of DNA-templated transcription