g.arboreum_cottongen_reftransV1_0010658, g.arboreum_cottongen_reftransV1_0010658 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0010658
Unique Name	g.arboreum_cottongen_reftransV1_0010658
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1610

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0010658:1..1610 . Chr12:93308985..93312066 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0B0PRQ1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_07457 PE=4 SV=1)

HSP 1 Score: 863.988 bits (2231), Expect = 0.000e+0
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = -2

Query:  377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS
Sbjct:  933 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1343

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D2VUD8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G017400 PE=4 SV=1)

HSP 1 Score: 848.581 bits (2191), Expect = 0.000e+0
Identity = 403/411 (98.05%), Postives = 406/411 (98.78%), Query Frame = -2

Query:  377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAG IKVTEAGEDIQETMDILVE GLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYL+ERLKALQEVNKEVRCSMDEDD+AKHIDKFLCPSQRSDMGVPLLLN SRLGNESC MLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGH+GSRPCRTLHDFAESNYLARLSF HRNSVS
Sbjct:  935 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGQIKVTEAGEDIQETMDILVETGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLVERLKALQEVNKEVRCSMDEDDKAKHIDKFLCPSQRSDMGVPLLLNLSRLGNESCNMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHDGSRPCRTLHDFAESNYLARLSFAHRNSVS 1345

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A061FRB8_THECC (SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_045253 PE=4 SV=1)

HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0
Identity = 385/411 (93.67%), Postives = 395/411 (96.11%), Query Frame = -2

Query:  377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLP+VTPCRHLLCLDCVGLDSK+CTLPGCG LYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQST+SSKVAYL+ERLKALQEVNKE+RCSMDED++AKHIDK L PSQRS+MGVPLL N SR G ES K LP+KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHS NKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM GTIEEQM+EFLQDADACRKFLKEESQR   EGSR  RTLHDFAESNYLARLSFVHRNSVS
Sbjct:  937 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPVVTPCRHLLCLDCVGLDSKVCTLPGCGRLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTTSSKVAYLVERLKALQEVNKEIRCSMDEDNDAKHIDKLLWPSQRSNMGVPLLQNCSRHGKESYKTLPQKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSSNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMSGTIEEQMLEFLQDADACRKFLKEESQRPDREGSRTRRTLHDFAESNYLARLSFVHRNSVS 1347

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A061FS07_THECC (SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein isoform 3 OS=Theobroma cacao GN=TCM_045253 PE=4 SV=1)

HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 385/411 (93.67%), Postives = 395/411 (96.11%), Query Frame = -2

Query:  377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLP+VTPCRHLLCLDCVGLDSK+CTLPGCG LYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQST+SSKVAYL+ERLKALQEVNKE+RCSMDED++AKHIDK L PSQRS+MGVPLL N SR G ES K LP+KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHS NKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM GTIEEQM+EFLQDADACRKFLKEESQR   EGSR  RTLHDFAESNYLARLSFVHRNSVS
Sbjct:  772 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPVVTPCRHLLCLDCVGLDSKVCTLPGCGRLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTTSSKVAYLVERLKALQEVNKEIRCSMDEDNDAKHIDKLLWPSQRSNMGVPLLQNCSRHGKESYKTLPQKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSSNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMSGTIEEQMLEFLQDADACRKFLKEESQRPDREGSRTRRTLHDFAESNYLARLSFVHRNSVS 1182

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D2V0N4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G017400 PE=4 SV=1)

HSP 1 Score: 793.882 bits (2049), Expect = 0.000e+0
Identity = 383/411 (93.19%), Postives = 386/411 (93.92%), Query Frame = -2

Query:  377 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNSVS 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAG IKVTEAGEDIQETMDILVE GLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYL+ERLKALQEVNKEVRCSMDEDD+AKHIDKFLCPSQRSDMGVPLLLN SRLGNESC MLPEKVLIFSQFLEHIHVIEQQ                    MKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGH+GSRPCRTLHDFAESNYLARLSF HRNSVS
Sbjct:  935 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGQIKVTEAGEDIQETMDILVETGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLVERLKALQEVNKEVRCSMDEDDKAKHIDKFLCPSQRSDMGVPLLLNLSRLGNESCNMLPEKVLIFSQFLEHIHVIEQQ--------------------MKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHDGSRPCRTLHDFAESNYLARLSFAHRNSVS 1325

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: B9RGB4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1452670 PE=4 SV=1)

HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 328/408 (80.39%), Postives = 360/408 (88.24%), Query Frame = -2

Query:  386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRS +IRNVRLSCCVAGHIKVT+AGEDIQETMD L E GLDP+SEEYA IKY L YGGNC RC EWCRLP+VTPCRHLLCLDCVGLDS+ CTLPGCG+LYEMQTP++L RPENPNPKWPVPKDLIELQPSYKQDDW+PDWQSTSSSKV+YL++R+K L E N E     D++ +AK+I + L PSQ  +    LL + SR  +ES K  PEKVLIFSQFLEHIHVIEQQLTFAGIKFAG+YSPMHS NKMKSLA FQ+D +C+ALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRP+ VETLAMRGTIEEQM+EFLQDAD CRK LKEE ++  HEG+RP R+LHDFAE NYLARLSFVH+N
Sbjct:  914 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSASIRNVRLSCCVAGHIKVTDAGEDIQETMDDLAEKGLDPISEEYALIKYYLQYGGNCLRCQEWCRLPVVTPCRHLLCLDCVGLDSEKCTLPGCGYLYEMQTPDSLTRPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRMKVLLEANSE-SGHYDKEADAKNIKEHLYPSQIGESNA-LLQDCSRQSSESYKKAPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGLYSPMHSSNKMKSLATFQHDATCLALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPVQVETLAMRGTIEEQMLEFLQDADECRKLLKEEFRKPDHEGARPRRSLHDFAERNYLARLSFVHKN 1319

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A5BGE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032626 PE=4 SV=1)

HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0
Identity = 323/409 (78.97%), Postives = 360/409 (88.02%), Query Frame = -2

Query:  383 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNS 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFR +TI+NVRLSCCVAGHIKVT+AGEDIQETMDILVENGLDP+S+EYAFIKYNLLYGG C RC EWCRLP++TPCRHLLCLDCV LDS+ CT PGCG+LYEMQ+PE L RPENPNPKWPVPKDLIELQPSYKQD W+PDWQSTSSSKV Y+++RLKALQE N++   +MDED + K ID+ +  S++++    L  +++RL +E+  + PEKVLIFSQFLEHIHVIEQQLT AGIKF+GMYSPMHS NKMKSL+ FQ+D  CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPI VETLAMRGTIEEQM+EFLQDAD CR+FLKEE  +   EG R  R+LHDFAESNYLA LSFV  NS
Sbjct:  798 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRISTIKNVRLSCCVAGHIKVTDAGEDIQETMDILVENGLDPISDEYAFIKYNLLYGGACMRCKEWCRLPVITPCRHLLCLDCVALDSEKCTFPGCGNLYEMQSPEILTRPENPNPKWPVPKDLIELQPSYKQDTWDPDWQSTSSSKVTYIVKRLKALQEANRKSGYAMDEDSDIKDIDELVSLSEQNNCNALLQQDYTRLNDETSHISPEKVLIFSQFLEHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTFQHDADCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIRVETLAMRGTIEEQMLEFLQDADECRRFLKEEFGKPYSEGVRAHRSLHDFAESNYLAHLSFVRTNS 1206

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: V4U415_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004162mg PE=4 SV=1)

HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0
Identity = 322/409 (78.73%), Postives = 356/409 (87.04%), Query Frame = -2

Query:  383 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRNS 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRN+RLSCCVAGHIKVT+AGEDIQETMD+LVENGLDPLS+EYAFIKYNLL GGNC RCNEWCRLP++TPCRH+LCLDCV +DS+ C+LPGCG LYEMQ+PE L RPENPNPKWPVPKDLIELQPSY+QDDWNPDWQSTSSSKVAYL+E+LK LQE N E+  + +ED   KHI++     Q S+    L  +  R   ES K LP+KV+IFSQFLEHIHVIEQQLT AGIKFAGMYSPMHS NK+KSL MF++D SC+ALLMDGSA+LGLDLSFVT VFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT+EEQM+EFLQD D CR+ LKEE  +   EG+R  RTLHDFAESNYL+ LSFV  NS
Sbjct:  931 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRCNEWCRLPVITPCRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPKDLIELQPSYRQDDWNPDWQSTSSSKVAYLVEKLKVLQEANWEICYAFNEDSSVKHIEELPFTPQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTNS 1339

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: M5XQS9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015535mg PE=4 SV=1)

HSP 1 Score: 674.085 bits (1738), Expect = 0.000e+0
Identity = 318/411 (77.37%), Postives = 357/411 (86.86%), Query Frame = -2

Query:  386 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYK---QDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDADACRKFLKEESQRSGHEGSRPCRTLHDFAESNYLARLSFVHRN 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTI NVRLSCCVAGHIKVT+AGEDIQETMDIL E+GLDP SEEYAFIKYNLLYGGNC RC EWCRLP++TPCRHLLCLDCVGLDS+ CT PGCGHLYEM+TP+ L RPENPNPKWPVPKDLIELQPSYK   QD+W+PDWQSTSSSKVAY++++LKALQE N  V C +D+++ A   D  +C S+ S+      ++  +   ++ +   EKVL+FSQFLEHIHVIEQQLT AGIK+AGMYSPMHS NKMKSLAMFQ+D SC  LLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQV+SRAHRMGATRPIHVETLAMRGTIEEQM+EFLQDAD CR+FLKEE  +S  +G+R  R+LHDFAESNYL+++SFV  N
Sbjct:  918 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIGNVRLSCCVAGHIKVTDAGEDIQETMDILAEDGLDPTSEEYAFIKYNLLYGGNCIRCKEWCRLPVITPCRHLLCLDCVGLDSERCTYPGCGHLYEMETPDALTRPENPNPKWPVPKDLIELQPSYKQARQDNWDPDWQSTSSSKVAYVVQKLKALQEANSNVDCPLDDNNNAMRTDNLVCLSEMSNSKGLRQVHDFKRTTKTHETNLEKVLVFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSNKMKSLAMFQHDASCTVLLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVVSRAHRMGATRPIHVETLAMRGTIEEQMLEFLQDADECRRFLKEEVGKSDPKGARTRRSLHDFAESNYLSQISFVRTN 1328

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Match: A0A0D2RW69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G017400 PE=4 SV=1)

HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0
Identity = 318/324 (98.15%), Postives = 320/324 (98.77%), Query Frame = -2

Query:  638 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTEAGEDIQETMDILVENGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDR 1609
            NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAG IKVTEAGEDIQETMDILVE GLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYL+ERLKALQEVNKEVRCSMDEDD+AKHIDKFLCPSQRSDMGVPLLLN SRLGNESC MLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDR
Sbjct:  935 NELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGQIKVTEAGEDIQETMDILVETGLDPLSEEYAFIKYNLLYGGNCQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLVERLKALQEVNKEVRCSMDEDDKAKHIDKFLCPSQRSDMGVPLLLNLSRLGNESCNMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDR 1258

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.171e-12
Identity = 61/275 (22.18%), Postives = 108/275 (39.27%), Query Frame = -2

Query:  536 GNCQRCNEWCRLPIVTPCRHLLCLDCV-----GLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQM 1342
            G C  C E     ++TPC H LC +C+        S +C  P C +    Q  E +  P     +  V K+ +E                  SSK+  L+E L+ L+                                                    K ++FSQ+   + +++  L+     F  +   +    + K L  F  D S + LLM   +  +G++L+  ++ F+M+P W+ ++EEQ + R HR+G T+ + +    ++GT+EE+M
Sbjct:  792 GECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLC--PVCRNTVSKQ--ELITAPTESRFQVDVEKNWVE------------------SSKITALLEELEGLRSSGS------------------------------------------------KSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERM 996

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_YARLI (DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RAD5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.179e-12
Identity = 39/130 (30.00%), Postives = 67/130 (51.54%), Query Frame = -2

Query:  521 KMLPE--KVLIFSQFLEHIHVIEQQL---TFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQ 895
            K LP+  K ++FSQF  ++ +I+ +L        +F G  S     + +K+   F      + L+   +  +GL+L    H F+M+P W  + E Q I R HRMG T+ +HV    +  ++EE+M++  Q
Sbjct:  869 KQLPKDAKSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTDVLKA---FGLSKGSVLLISLKTGGVGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQQ 995

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_CANGA (DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.332e-12
Identity = 41/129 (31.78%), Postives = 68/129 (52.71%), Query Frame = -2

Query:  518 EKVLIFSQFLEHIHVIEQQLT-------FAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQD 883
            E+V++FSQF  ++ ++E QL            KF G  S       ++   +  Y    + LL   +  +GL+L+  ++ F+M+P W  SME+Q I R HR+G T  + V    + G+IEE+M+  +QD
Sbjct:  994 EQVVVFSQFSSYLDILESQLNEVYSSNKLKVYKFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTCASYAFMMDPWWSPSMEDQAIDRIHRIGQTNSVKVIRFVIDGSIEEKMLR-IQD 1121

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.061e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -2

Query:  530 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMME 880
            K ++FSQF   + +IE  LT A IKF  +   M    +   L  F        LL+   +  +GL+L+    VF+M+P W  ++E Q I R HRMG    + V+   ++ ++EE+M++
Sbjct: 1004 KSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTILLLSLRAGGVGLNLTSAGRVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLK 1121

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.891e-12
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = -2

Query:  530 EKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMDGSAA-LGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMME 883
            EK ++FSQ+   + ++E  L   G +F      +    + K L  F        LLM   A  +GL+L+  + VFLM+P W+ ++EEQ I R HR+G  R + V    ++ T+EE+M +
Sbjct: 1128 EKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQ 1246

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SHPRH_MOUSE (E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.629e-11
Identity = 57/195 (29.23%), Postives = 92/195 (47.18%), Query Frame = -2

Query:  512 QSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDAD 1093
            Q+TS  +V+Y+    KA QE +  V+ S     EA  + + L   Q  D G                    K L+FS + + + +I + LT   ++F  +          ++L+ F+YD     LL+   + + GL +   THV L+EPI + + E Q I R HR+G T+P  V    ++ TIEE+M   L+ A+
Sbjct: 1471 QTTSHKEVSYVFTSEKANQEDDIPVKGSHSTKVEA--VVRTLMKIQLRDPGA-------------------KALVFSTWQDVLDIISKALTDNNMEFTQI---SRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAE 1641

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_HUMAN (Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.601e-11
Identity = 62/281 (22.06%), Postives = 112/281 (39.86%), Query Frame = -2

Query:  527 CQRCNEWCRLPIVTPCRHLLCLDCVGLDSKMCTLPGCGHLYEMQTPETLARPENPNPKWPVPKD------LIELQPS--YKQDDWNPDWQSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 1336
            C  C +   +P++T C H+ C  C+           C           + + E P+ K P+ ++      L+E  P    +  +   D + TSSSK+  LM  L  L++ N  +                                              K L+ SQF   + +IE  L  +G  F  +   M    +++S+  FQ  ++    + LL   +  +GL+LS  + VFLM+P W+ + E+Q   R HR+G  + + +    ++ ++EE M++ 
Sbjct:  760 CAICLDSLTVPVITHCAHVFCKPCI-----------C----------QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNI----------------------------------------------KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 973

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: SHPRH_HUMAN (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.929e-11
Identity = 56/195 (28.72%), Postives = 92/195 (47.18%), Query Frame = -2

Query:  512 QSTSSSKVAYLMERLKALQEVNKEVRCSMDEDDEAKHIDKFLCPSQRSDMGVPLLLNHSRLGNESCKMLPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDSCMALLMD-GSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEFLQDAD 1093
            Q+TS  +++Y+    KA QE +  V+ S     EA  + + L   Q  D G                    K L+FS + + + +I + LT   ++FA +          ++L+ F+ D     LL+   + + GL +   THV L+EPI + + E Q I R HR+G T+P  V    ++ TIEE+M   L+ A+
Sbjct: 1480 QTTSHKEISYVFTSEKANQEEDIPVKGSHSTKVEA--VVRTLMKIQLRDPGA-------------------KALVFSTWQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAE 1650

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.149e-10
Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = -2

Query:  527 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 880
            K L+ SQF   + +IE  L  +G  F  +   M    +++S+  FQ  ++    + LL   +  +GL+L   + VFLM+P W+ + E+Q   R HR+G  + + +    ++ ++EE M++ 
Sbjct:  847 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 967

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Match: HLTF_RABIT (Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.652e-10
Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = -2

Query:  527 KVLIFSQFLEHIHVIEQQLTFAGIKFAGMYSPMHSGNKMKSLAMFQYDDS---CMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTIEEQMMEF 880
            K L+ SQF   + +IE  L  +G  F  +   M    +++S+  FQ  ++    + LL   +  +GL+L   + VFLM+P W+ + E+Q   R HR+G  + + +    ++ ++EE M++ 
Sbjct:  850 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLKI 970

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PRQ1_GOSAR	0.000e+0	100.00	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2VUD8_GOSRA	0.000e+0	98.05	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FRB8_THECC	0.000e+0	93.67	SNF2 domain-containing protein / helicase domain-c...	[more]
A0A061FS07_THECC	0.000e+0	93.67	SNF2 domain-containing protein / helicase domain-c...	[more]
A0A0D2V0N4_GOSRA	0.000e+0	93.19	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9RGB4_RICCO	0.000e+0	80.39	Putative uncharacterized protein OS=Ricinus commun...	[more]
A5BGE7_VITVI	0.000e+0	78.97	Putative uncharacterized protein OS=Vitis vinifera...	[more]
V4U415_9ROSI	0.000e+0	78.73	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
M5XQS9_PRUPE	0.000e+0	77.37	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A0D2RW69_GOSRA	0.000e+0	98.15	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0010658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SM3L2_ARATH	1.171e-12	22.18	Putative SWI/SNF-related matrix-associated actin-d...	[more]
RAD5_YARLI	1.179e-12	30.00	DNA repair protein RAD5 OS=Yarrowia lipolytica (st...	[more]
RAD5_CANGA	2.332e-12	31.78	DNA repair protein RAD5 OS=Candida glabrata (strai...	[more]
RAD5_GIBZE	4.061e-12	32.20	DNA repair protein RAD5 OS=Gibberella zeae (strain...	[more]
SM3L3_ARATH	4.891e-12	32.77	Putative SWI/SNF-related matrix-associated actin-d...	[more]
SHPRH_MOUSE	1.629e-11	29.23	E3 ubiquitin-protein ligase SHPRH OS=Mus musculus ...	[more]
HLTF_HUMAN	2.601e-11	22.06	Helicase-like transcription factor OS=Homo sapiens...	[more]
SHPRH_HUMAN	3.929e-11	28.72	E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens ...	[more]
HLTF_MOUSE	1.149e-10	28.10	Helicase-like transcription factor OS=Mus musculus...	[more]
HLTF_RABIT	1.652e-10	28.10	Helicase-like transcription factor OS=Oryctolagus ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 254..336 e-value: 2.0E-4 score: 30.7
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 239..336 e-value: 7.3E-9 score: 35.8
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 231..374 score: 9.772
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 241..363 e-value: 7.9E-11 score: 41.1 coord: 173..192 e-value: 7.9E-11 score: 41.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 241..362 coord: 168..192
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 205..220 e-value: 3.6E-5 score: 22.8 coord: 89..114 e-value: 3.6E-5 score: 22.8
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 1..26
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 90..128 coord: 238..358
None	No IPR available	PANTHER	PTHR10799:SF573	TRANSCRIPTION TERMINATION FACTOR 2	coord: 1..26 coord: 165..189
None	No IPR available	PANTHER	PTHR10799:SF573	TRANSCRIPTION TERMINATION FACTOR 2	coord: 90..128
None	No IPR available	PANTHER	PTHR10799:SF573	TRANSCRIPTION TERMINATION FACTOR 2	coord: 238..358
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 165..189
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 105..114

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0010658 ID=g.arboreum_cottongen_reftransV1_0010658; Name=g.arboreum_cottongen_reftransV1_0010658; organism=Gossypium arboreum; type=contig; length=1610bp
CTCAAATCCAACTCTAAAATATATTTCAATTAGAATTCACCTGTTTGGAA
GATAATGCAATGAATATTCATCCAGACATGTGACATAACATATCAGTAAA
GGCACCATTATACACCAAAAAATGACCTAAAACATACAACCTACAGATAA
TAAATGTTAAATTATCCTATGTATTAGGTACCAAAAAATTAGCAACACCA
AGGTATTTTCTACAACAATGAAAGATGGTTGTGAACTGTACCATGTTCCA
CCAAAAGGTACCGAGTATCAAGAACAAGCTGCACTATATTTGTAGAACCG
TCAACTGAAGTCGGTGCTAATATTTTAAAATGGTGCCCTCCTATCCTTTT
AGAATAACAGTCCTGTAAGTCACTTAGGATACTGAATTTCTATGCACAAA
GCTAAGTCGAGCCAAATAATTACTCTCAGCAAAATCATGGAGTGTTCGAC
AAGGTCGTGAACCCTCATGGCCTGATCTCTGGGACTCTTCTTTCAAAAAT
TTCCTACATGCATCAGCATCCTGTAAGAATTCCATCATTTGTTCTTCAAT
TGTACCACGCATGGCTAAAGTTTCCACATGAATTGGACGAGTAGCACCCA
TCCGATGGGCACGACTAATGACTTGTTCCTCCATGCTTCTGTCCCAAATA
GGCTCCATTAAAAATACATGAGTAACAAAACTTAAATCAAGACCCAATGC
AGCACTCCCATCCATCAAGAGAGCCATGCAGCTATCATCATACTGGAACA
TGGCCAGTGACTTCATCTTGTTGCCAGAATGCATTGGACTATACATTCCA
GCAAACTTGATACCAGCAAAAGTAAGCTGCTGCTCAATAACATGTATATG
CTCAAGAAATTGGGAAAATATTAGAACTTTCTCTGGAAGCATCTTGCATG
ACTCATTGCCCAGTCTAGAGTGATTCAGCAGCAAAGGCACGCCCATATCA
CTCCTCTGTGAAGGACAAAGAAACTTATCTATGTGCTTGGCTTCATCATC
TTCATCCATAGAGCAACGGACCTCTTTATTTACCTCCTGCAATGCCTTCA
GCCTCTCCATAAGATAAGCAACTTTACTGCTAGAGGTTGATTGCCAATCA
GGATTCCAGTCATCCTGTTTATATGAAGGTTGTAATTCGATAAGATCTTT
TGGGACAGGCCACTTGGGATTTGGATTTTCCGGGCGCGCTAATGTTTCAG
GAGTCTGCATCTCATATAAGTGACCACAGCCAGGTAAAGTACACATTTTA
CTGTCCAAACCAACACAATCAAGGCACAAAAGATGCCTACATGGGGTAAC
AATTGGTAGACGGCACCATTCATTGCATCTCTGACAATTACCACCATAAA
GGAGGTTATATTTAATAAAAGCATATTCTTCTGAAAGAGGATCCAGGCCA
TTTTCAACTAAAATGTCCATTGTTTCTTGAATATCTTCACCAGCTTCTGT
CACTTTTATATGCCCAGCCACACAACAAGACAACCTGACATTTCTAATTG
TTGTACTCCGAAACTTCCACTGCTTTGGATTTAATAAACTTTCAACATGA
GAAGGATCATTCCAGTCAGCCATTAGAATATTACGCCGCACTGTAACTAC
CAATTCATTA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C-like
IPR027417	P-loop_NTPase
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Search form

g.arboreum_cottongen_reftransV1_0010658, g.arboreum_cottongen_reftransV1_0010658 (contig) Gossypium arboreum

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