g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011991
Unique Nameg.arboreum_cottongen_reftransV1_0011991
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1854
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0011991:42..1854 .
Chr3:91493873..91495900 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2TUK1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G239200 PE=4 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 7.856e-165
Identity = 247/252 (98.02%), Postives = 251/252 (99.60%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYE+LQ+T+KSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKR+S
Sbjct: 1134 FCLRLYEYLQKTLKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLGYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRDS 1385          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2USZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G239200 PE=4 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 8.206e-165
Identity = 247/252 (98.02%), Postives = 251/252 (99.60%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYE+LQ+T+KSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKR+S
Sbjct: 1133 FCLRLYEYLQKTLKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLGYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRDS 1384          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A061FFE4_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034949 PE=4 SV=1)

HSP 1 Score: 459.144 bits (1180), Expect = 1.922e-142
Identity = 220/252 (87.30%), Postives = 237/252 (94.05%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYEHLQ+T+KSLG+PKITVGIITPYKLQLKCLQREFESV+++EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQSDDWAALIADAKAR CYMDMDSLPKDF K+LL   FSGPRGL Y PSQGK SNMRGLRSAGPRHRSLDMHM+SR+GTPSEDEDKSGT+VISRNGNYRPFK P++T LDDF  SGDKSREAWQYGI KKQ+SAG +GKR+S
Sbjct: 1102 FCLRLYEHLQKTVKSLGLPKITVGIITPYKLQLKCLQREFESVIKSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALIADAKARKCYMDMDSLPKDFPKELL-SNFSGPRGLGYPPSQGKVSNMRGLRSAGPRHRSLDMHMDSRAGTPSEDEDKSGTSVISRNGNYRPFKPPMETSLDDFDQSGDKSREAWQYGIQKKQSSAGVVGKRDS 1351          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A061FG69_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_034949 PE=4 SV=1)

HSP 1 Score: 459.144 bits (1180), Expect = 3.925e-142
Identity = 220/252 (87.30%), Postives = 237/252 (94.05%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYEHLQ+T+KSLG+PKITVGIITPYKLQLKCLQREFESV+++EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQSDDWAALIADAKAR CYMDMDSLPKDF K+LL   FSGPRGL Y PSQGK SNMRGLRSAGPRHRSLDMHM+SR+GTPSEDEDKSGT+VISRNGNYRPFK P++T LDDF  SGDKSREAWQYGI KKQ+SAG +GKR+S
Sbjct: 1136 FCLRLYEHLQKTVKSLGLPKITVGIITPYKLQLKCLQREFESVIKSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALIADAKARKCYMDMDSLPKDFPKELL-SNFSGPRGLGYPPSQGKVSNMRGLRSAGPRHRSLDMHMDSRAGTPSEDEDKSGTSVISRNGNYRPFKPPMETSLDDFDQSGDKSREAWQYGIQKKQSSAGVVGKRDS 1385          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2TSW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G282100 PE=4 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 2.223e-125
Identity = 204/252 (80.95%), Postives = 222/252 (88.10%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESV+++EEG  D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRAL VMGNA ALVQSDDWAALIADAKARNCY+DMDSLPKDF KDL+ K+FSGPRGL Y PSQGKASN R  R AGPRHRS DMHM+SRSGTP ED  KS    I RNGNYRPFK P++  LD+F  +GDKSR+AWQYG  +K+NSAG + K++S
Sbjct: 1133 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVIKSEEGN-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALLVMGNAKALVQSDDWAALIADAKARNCYVDMDSLPKDFQKDLVSKDFSGPRGLGYPPSQGKASNTRSFRYAGPRHRSGDMHMDSRSGTPLEDAGKS----IYRNGNYRPFKPPMEPSLDNFDQAGDKSRDAWQYGT-QKRNSAGALWKKDS 1378          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B0MLJ7_GOSAR (SPBC29A10.10c: Uncharacterized ATP-dependent helicase C29A10.10c OS=Gossypium arboreum GN=F383_21170 PE=4 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 1.384e-121
Identity = 203/260 (78.08%), Postives = 220/260 (84.62%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALW--------VMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESV+++EEG  D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRAL         VMGNA ALVQSDDWAALIADAKARNCYMDMDSLPKDF KDL+ K+FSG RGL Y PSQGKASN R  R AGPRHRS DMHM+SRSGTP ED  KS    I RNGNYRPFK P++  LD+F  +GDKSR+AWQYG  +K+NSA  + K++S
Sbjct: 1145 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVIKSEEGN-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALLELTLMFEQVMGNAKALVQSDDWAALIADAKARNCYMDMDSLPKDFQKDLVSKDFSGSRGLGYPPSQGKASNTRSFRYAGPRHRSGDMHMDSRSGTPLEDAGKS----IYRNGNYRPFKPPMEPSLDNFDQAGDKSRDAWQYGT-QKRNSAAALWKKDS 1398          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: W9RSI0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021548 PE=4 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 2.434e-119
Identity = 193/251 (76.89%), Postives = 216/251 (86.06%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKA-SNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLR+YEHLQ+T KSLG+ KI+VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALIADAK+R+CYMDMDSLPKDF   L+PK      G Y+P  GK  SN RGLRS GPRHRS DMHMESRSGT SED++KSG   ISRNG+YRPF+ P +  LDDF  SGD+S++AWQYGI KKQNS+G + KR+
Sbjct:  721 FCLRVYEHLQKTAKSLGLGKISVGIITPYKLQLKCLQREFEDVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALIQSDDWAALIADAKSRDCYMDMDSLPKDF---LVPK------GPYTPLPGKVLSNSRGLRSGGPRHRSFDMHMESRSGTLSEDDEKSGVA-ISRNGSYRPFRPPFENSLDDFDQSGDRSKDAWQYGIQKKQNSSGVVAKRD 960          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: M5XRW4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000264mg PE=4 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.229e-117
Identity = 190/251 (75.70%), Postives = 218/251 (86.85%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FC+RLYEHL +++K+ GV KI+VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWA+LI DAKARNCYMDM++LPK+F   L+PK   GP   Y+P  GK +SNMRG RSAGPRHRSLDMH+ESRSGTPSED++K G +VISRNG YRP K P +  LDDF  SGDKSR+AWQYGI +K +SAG +G+R+
Sbjct: 1134 FCVRLYEHLHKSLKAFGVGKISVGIITPYKLQLKCLQREFEDVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWASLITDAKARNCYMDMETLPKEF---LVPK---GPS--YTPLPGKPSSNMRGFRSAGPRHRSLDMHVESRSGTPSEDDEKLGASVISRNGTYRPMKPPFENSLDDFDQSGDKSRDAWQYGIQRKHSSAGVVGRRD 1375          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A5BNC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009619 PE=4 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.872e-117
Identity = 192/252 (76.19%), Postives = 220/252 (87.30%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
             CLRLYEHLQ+T+KSLG+ KI+VGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALI+DA+AR+CY+DMDSLPK+F   L+PK   GP   Y P  GK +SNMRGLRSAGPRHR LDMH+ES+SGTPSED++KS  ++ISRNGNYRP K  ++  LDDF  S DKSR+AWQYGI KKQ+SAG + KR+S
Sbjct: 1166 ICLRLYEHLQKTLKSLGMGKISVGIITPYKLQLKCLQREFDDVLSSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWAALISDARARSCYLDMDSLPKEF---LVPK---GP--TYGPLSGKVSSNMRGLRSAGPRHRQLDMHVESKSGTPSEDDEKSNASLISRNGNYRPLKPTMENSLDDFDQSADKSRDAWQYGIQKKQSSAGVVAKRDS 1408          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A067EWL0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047960mg PE=4 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.482e-115
Identity = 185/267 (69.29%), Postives = 211/267 (79.03%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES*ALVVVYELFWLMAV 800
            F + LYEHLQ+T+KS+G+ K+TVGIITPYKLQLKCLQ EF +VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA AL QSDDWAALIAD+KARNCYMDMDSLPK+F+  L  K        Y P QGK   N RGLRSAG RHRS DM+MESRSGTPSED++K     +SRNGNYRPFK PL+  LDDF  SG+K R+AWQ+GI KKQ+S G    R    L  + + FW + +
Sbjct:   76 FGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSVALAAKAPG-----YGPLQGKIPHNARGLRSAGQRHRSFDMNMESRSGTPSEDDEK-----VSRNGNYRPFKPPLENSLDDFDQSGEKYRDAWQHGIQKKQSSGGKGSPR----LEDLVDAFWWVGL 327          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.124e-14
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGK------RDIYINTVDAFQGQERDVIIMSCVRASS-HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380
            E L   +   GV    +G+IT Y+ Q     R F       +G        ++ I +VDAFQG+E+D II++CVR++   G+GF++D RR+NVA+TRA+  L ++GNA  L + D W  LI   K++
Sbjct:  748 EKLVSKLIKAGVQPHQIGVITSYEGQ-----RSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSK 869          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SDE3_ARATH (Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.448e-12
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 3
Query:   12 RLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRAS--------SHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLP--KDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAG 518
            ++ E ++R   +  V +  +G+ITPY+ Q+  ++   + +  TE     + + +V+ FQGQE+ VII+S VR++        ++ +GF+++ RR NVA+TRA   L ++GN   + +  +W  L+      N Y     LP  ++F ++   +E S   G   P + + +N   L + G
Sbjct:  690 KVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTE-----VKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGC-GLPEQEEFVEEPFKQEGSS-NGPQYPPEAEWNNSGELNNGG 861          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MOV10_CHICK (Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.799e-12
Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 3
Query:   15 LYEHLQRTIKSLG---VPKIT---VGIITPYKLQLKCLQREFES---VLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGV--------GFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCY 389
            + ++LQ+ ++S G    P I+   +GII+PY+ Q++ ++    S   VLR       + + +V+ FQGQER VI++S VR+ S  +        GF+ + +R+NVALTRA+  L V+GNA+ L +   W   +   +    Y
Sbjct:  800 VVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYCRDEGAY 941          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: MOV10_BOVIN (Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.009e-12
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   66 TVGIITPYKLQLK----CLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGV--------GFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCY 389
            +VG+I+PY+ Q++    C+ +  +  LR  +  +D+ + +V+ FQGQER VI++S VR+S   V        GF+ + +R NVA+TRA+  L V+GN   L    DW   +   K    Y
Sbjct:  826 SVGVISPYRKQVEKIRYCITK-LDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: DNA2_XENLA (DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus laevis GN=dna2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.066e-12
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3
Query:   12 RLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHG-VG-FVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDM 398
            +L  HL +     G     +GII PY+ QLK +   F S+         + +NTVD +QG+++ VII+S VR++  G +G  + D RR+NVALTRA+  L ++G    L + D    LI + K  N   D+
Sbjct:  918 KLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSL-----SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTENQIYDL 1043          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TUK1_GOSRA7.856e-16598.02Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2USZ4_GOSRA8.206e-16598.02Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FFE4_THECC1.922e-14287.30P-loop containing nucleoside triphosphate hydrolas... [more]
A0A061FG69_THECC3.925e-14287.30P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0D2TSW3_GOSRA2.223e-12580.95Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0MLJ7_GOSAR1.384e-12178.08SPBC29A10.10c: Uncharacterized ATP-dependent helic... [more]
W9RSI0_9ROSA2.434e-11976.89Uncharacterized protein OS=Morus notabilis GN=L484... [more]
M5XRW4_PRUPE1.229e-11775.70Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A5BNC8_VITVI1.872e-11776.19Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067EWL0_CITSI5.482e-11569.29Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RENT1_CAEEL2.124e-1437.80Regulator of nonsense transcripts 1 OS=Caenorhabdi... [more]
SDE3_ARATH1.448e-1227.93Probable RNA helicase SDE3 OS=Arabidopsis thaliana... [more]
MOV10_CHICK1.799e-1233.10Putative helicase MOV-10 OS=Gallus gallus GN=MOV10... [more]
MOV10_BOVIN2.009e-1235.00Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE... [more]
DNA2_XENLA2.066e-1235.88DNA replication ATP-dependent helicase/nuclease DN... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13087AAA_12coord: 6..105
e-value: 2.8E-32
score: 111.8
NoneNo IPR availablePANTHERPTHR10887:SF359HELICASE SEN1coord: 1..249
NoneNo IPR availablePANTHERPTHR10887DNA2/NAM7 HELICASE FAMILYcoord: 1..249
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 44..108
e-value: 5.3E-6
score: 25.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..134

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bp
TATTTTGTTTGCGCTTATATGAGCATCTACAGAGAACTATAAAATCTTTG
GGTGTGCCAAAAATCACAGTTGGTATAATAACACCATACAAGCTGCAATT
AAAATGCCTACAACGTGAGTTTGAGAGTGTTCTAAGGACAGAGGAAGGGA
AGAGGGATATCTATATTAATACTGTAGATGCTTTCCAGGGCCAGGAGCGT
GATGTTATTATTATGTCTTGTGTCCGTGCCTCAAGTCATGGGGTGGGCTT
TGTTGCAGATATTCGACGAATGAATGTTGCTCTTACTCGTGCTAGAAGGG
CTTTGTGGGTTATGGGTAATGCCAGTGCTCTGGTGCAATCAGATGACTGG
GCAGCCTTAATTGCTGATGCCAAAGCTAGGAATTGTTATATGGACATGGA
TTCTCTCCCCAAGGACTTCACAAAAGACTTGCTCCCCAAAGAATTTTCAG
GGCCAAGGGGACTTTACTCTCCATCACAGGGTAAGGCTTCTAATATGAGA
GGTTTAAGGTCTGCTGGACCAAGACATAGATCACTTGATATGCACATGGA
ATCCAGGTCAGGAACACCATCAGAGGATGAAGATAAGTCAGGCACAACTG
TAATTTCTAGGAATGGGAATTATCGGCCATTTAAGTCGCCACTGGATACT
TTTTTGGATGATTTTCATCCGTCAGGTGACAAATCTAGAGAGGCCTGGCA
ATATGGTATACTGAAGAAGCAAAATTCTGCTGGTACAATGGGGAAAAGAG
AGTCCTAGGCATTGGTTGTTGTCTACGAACTGTTTTGGCTCATGGCGGTC
CGTGGAGCAGAACTTTATTTATAATCCTTGCATTGAAATTTATGGAGCTC
TTAGCTCCATGAGTATTGAAACAATTTGTTGGAAGTTGGTGCCAGACTTG
TGTCTGATAATTGCCCTAAGATGAACAAGTTGAGAGGGATTTGCATGGGT
CACCAGTGAACTTTTGCCAGTCTGCCATGTTGATTCCTGCTAGGAAGTGG
ATGATCTGGGGGGTAGGATGTATGAGATCAAACCCTAGATCCACCCAGAC
AGGCTTCGAAGGAGTTGAATGCTGGCATTAAGAGTTGTGCCGCCCTACAA
TATCCCTTTGCTTGATAATTGATTGTTGCAATCTGCTATTACTTGGATGA
AGTCTTTAATCGATACAGTTGGGCAGTCATTTCAAATTCTGGTGCTCTTT
GACTTTTGTCCTTTTCCACAATACACTGAATGCATGGCCGACTCTTCAGT
TTGGGGATGTGAATTCTTTTGGATCTGTCAAATTTGAAGTTACATTCATC
AAATTTACAAATGCTTGCAAAATGTCAGAGGACGAGTAGCGATTCTTGAG
CGGGTGTGCTTTGCAGAATCCTAAGAATCAACCTCTATCAAAGTTGCCGT
ATATATTCTTTGAACATGGAGATGCACTTCGGTGATAACTTTTTAGTTCT
GCAGGATACGGGTTGGTTAACCAAGTATTCTTTGCTTTTGTTCTTTATGT
TAATTTTCCTTGGTTCTTTAAACCAAAAGACTTGGATAGAAATAGGACAC
ACCTCCAAAATTCTGTATAGAGAAGTAAGACTCCTAAAAGGGTACAGAAT
TGTGCGAGGAACTCTCATCTAGCTGACTTTGTGTATACAGCTTCAGGTGG
AACCAAAGAATTCTTTCTCAGCTGCGAAAAACCTCAGCTGCTGTTTTTTT
TTTTTTTTAAACTTGAAAACCATCAAATAATGGCCCAAGGTTTTAAACTA
TACTATTTGTTTTATTTTCCTATAATGAGATGTACTTTTCCTCAGATTGC
CATTACTTAAAAGTAATGCGGGGGATACAATTTATGTAGCGATGAACATA
TCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase