g.arboreum_cottongen_reftransV1_0011991, g.arboreum_cottongen_reftransV1_0011991 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011991
Unique Nameg.arboreum_cottongen_reftransV1_0011991
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1854
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0011991:42..1854 .
Chr3:91493873..91495900 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2TUK1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G239200 PE=4 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 7.856e-165
Identity = 247/252 (98.02%), Postives = 251/252 (99.60%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYE+LQ+T+KSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKR+S
Sbjct: 1134 FCLRLYEYLQKTLKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLGYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRDS 1385          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2USZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G239200 PE=4 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 8.206e-165
Identity = 247/252 (98.02%), Postives = 251/252 (99.60%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYE+LQ+T+KSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKR+S
Sbjct: 1133 FCLRLYEYLQKTLKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLGYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRDS 1384          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A061FFE4_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034949 PE=4 SV=1)

HSP 1 Score: 459.144 bits (1180), Expect = 1.922e-142
Identity = 220/252 (87.30%), Postives = 237/252 (94.05%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYEHLQ+T+KSLG+PKITVGIITPYKLQLKCLQREFESV+++EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQSDDWAALIADAKAR CYMDMDSLPKDF K+LL   FSGPRGL Y PSQGK SNMRGLRSAGPRHRSLDMHM+SR+GTPSEDEDKSGT+VISRNGNYRPFK P++T LDDF  SGDKSREAWQYGI KKQ+SAG +GKR+S
Sbjct: 1102 FCLRLYEHLQKTVKSLGLPKITVGIITPYKLQLKCLQREFESVIKSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALIADAKARKCYMDMDSLPKDFPKELL-SNFSGPRGLGYPPSQGKVSNMRGLRSAGPRHRSLDMHMDSRAGTPSEDEDKSGTSVISRNGNYRPFKPPMETSLDDFDQSGDKSREAWQYGIQKKQSSAGVVGKRDS 1351          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A061FG69_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_034949 PE=4 SV=1)

HSP 1 Score: 459.144 bits (1180), Expect = 3.925e-142
Identity = 220/252 (87.30%), Postives = 237/252 (94.05%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYEHLQ+T+KSLG+PKITVGIITPYKLQLKCLQREFESV+++EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+ALVQSDDWAALIADAKAR CYMDMDSLPKDF K+LL   FSGPRGL Y PSQGK SNMRGLRSAGPRHRSLDMHM+SR+GTPSEDEDKSGT+VISRNGNYRPFK P++T LDDF  SGDKSREAWQYGI KKQ+SAG +GKR+S
Sbjct: 1136 FCLRLYEHLQKTVKSLGLPKITVGIITPYKLQLKCLQREFESVIKSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALIADAKARKCYMDMDSLPKDFPKELL-SNFSGPRGLGYPPSQGKVSNMRGLRSAGPRHRSLDMHMDSRAGTPSEDEDKSGTSVISRNGNYRPFKPPMETSLDDFDQSGDKSREAWQYGIQKKQSSAGVVGKRDS 1385          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0D2TSW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G282100 PE=4 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 2.223e-125
Identity = 204/252 (80.95%), Postives = 222/252 (88.10%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESV+++EEG  D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRAL VMGNA ALVQSDDWAALIADAKARNCY+DMDSLPKDF KDL+ K+FSGPRGL Y PSQGKASN R  R AGPRHRS DMHM+SRSGTP ED  KS    I RNGNYRPFK P++  LD+F  +GDKSR+AWQYG  +K+NSAG + K++S
Sbjct: 1133 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVIKSEEGN-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALLVMGNAKALVQSDDWAALIADAKARNCYVDMDSLPKDFQKDLVSKDFSGPRGLGYPPSQGKASNTRSFRYAGPRHRSGDMHMDSRSGTPLEDAGKS----IYRNGNYRPFKPPMEPSLDNFDQAGDKSRDAWQYGT-QKRNSAGALWKKDS 1378          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A0B0MLJ7_GOSAR (SPBC29A10.10c: Uncharacterized ATP-dependent helicase C29A10.10c OS=Gossypium arboreum GN=F383_21170 PE=4 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 1.384e-121
Identity = 203/260 (78.08%), Postives = 220/260 (84.62%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALW--------VMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGL-YSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
            FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESV+++EEG  D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRAL         VMGNA ALVQSDDWAALIADAKARNCYMDMDSLPKDF KDL+ K+FSG RGL Y PSQGKASN R  R AGPRHRS DMHM+SRSGTP ED  KS    I RNGNYRPFK P++  LD+F  +GDKSR+AWQYG  +K+NSA  + K++S
Sbjct: 1145 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVIKSEEGN-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALLELTLMFEQVMGNAKALVQSDDWAALIADAKARNCYMDMDSLPKDFQKDLVSKDFSGSRGLGYPPSQGKASNTRSFRYAGPRHRSGDMHMDSRSGTPLEDAGKS----IYRNGNYRPFKPPMEPSLDNFDQAGDKSRDAWQYGT-QKRNSAAALWKKDS 1398          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: W9RSI0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021548 PE=4 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 2.434e-119
Identity = 193/251 (76.89%), Postives = 216/251 (86.06%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGKA-SNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FCLR+YEHLQ+T KSLG+ KI+VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALIADAK+R+CYMDMDSLPKDF   L+PK      G Y+P  GK  SN RGLRS GPRHRS DMHMESRSGT SED++KSG   ISRNG+YRPF+ P +  LDDF  SGD+S++AWQYGI KKQNS+G + KR+
Sbjct:  721 FCLRVYEHLQKTAKSLGLGKISVGIITPYKLQLKCLQREFEDVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALIQSDDWAALIADAKSRDCYMDMDSLPKDF---LVPK------GPYTPLPGKVLSNSRGLRSGGPRHRSFDMHMESRSGTLSEDDEKSGVA-ISRNGSYRPFRPPFENSLDDFDQSGDRSKDAWQYGIQKKQNSSGVVAKRD 960          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: M5XRW4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000264mg PE=4 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.229e-117
Identity = 190/251 (75.70%), Postives = 218/251 (86.85%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRE 752
            FC+RLYEHL +++K+ GV KI+VGIITPYKLQLKCLQREFE VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWA+LI DAKARNCYMDM++LPK+F   L+PK   GP   Y+P  GK +SNMRG RSAGPRHRSLDMH+ESRSGTPSED++K G +VISRNG YRP K P +  LDDF  SGDKSR+AWQYGI +K +SAG +G+R+
Sbjct: 1134 FCVRLYEHLHKSLKAFGVGKISVGIITPYKLQLKCLQREFEDVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWASLITDAKARNCYMDMETLPKEF---LVPK---GPS--YTPLPGKPSSNMRGFRSAGPRHRSLDMHVESRSGTPSEDDEKLGASVISRNGTYRPMKPPFENSLDDFDQSGDKSRDAWQYGIQRKHSSAGVVGRRD 1375          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A5BNC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009619 PE=4 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.872e-117
Identity = 192/252 (76.19%), Postives = 220/252 (87.30%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES 755
             CLRLYEHLQ+T+KSLG+ KI+VGIITPYKLQLKCLQREF+ VL +EEGK D+YINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNA+AL+QSDDWAALI+DA+AR+CY+DMDSLPK+F   L+PK   GP   Y P  GK +SNMRGLRSAGPRHR LDMH+ES+SGTPSED++KS  ++ISRNGNYRP K  ++  LDDF  S DKSR+AWQYGI KKQ+SAG + KR+S
Sbjct: 1166 ICLRLYEHLQKTLKSLGMGKISVGIITPYKLQLKCLQREFDDVLSSEEGK-DLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWAALISDARARSCYLDMDSLPKEF---LVPK---GP--TYGPLSGKVSSNMRGLRSAGPRHRQLDMHVESKSGTPSEDDEKSNASLISRNGNYRPLKPTMENSLDDFDQSADKSRDAWQYGIQKKQSSAGVVAKRDS 1408          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Match: A0A067EWL0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047960mg PE=4 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.482e-115
Identity = 185/267 (69.29%), Postives = 211/267 (79.03%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMDMDSLPKDFTKDLLPKEFSGPRGLYSPSQGK-ASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILKKQNSAGTMGKRES*ALVVVYELFWLMAV 800
            F + LYEHLQ+T+KS+G+ K+TVGIITPYKLQLKCLQ EF +VL +EEGK D+YINTVDAFQGQERDVIIMSCVRAS+HGVGFVADIRRMNVALTRARRALWVMGNA AL QSDDWAALIAD+KARNCYMDMDSLPK+F+  L  K        Y P QGK   N RGLRSAG RHRS DM+MESRSGTPSED++K     +SRNGNYRPFK PL+  LDDF  SG+K R+AWQ+GI KKQ+S G    R    L  + + FW + +
Sbjct:   76 FGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGK-DLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSVALAAKAPG-----YGPLQGKIPHNARGLRSAGQRHRSFDMNMESRSGTPSEDDEK-----VSRNGNYRPFKPPLENSLDDFDQSGEKYRDAWQHGIQKKQSSGGKGSPR----LEDLVDAFWWVGL 327          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.862e-17
Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 3
Query:   21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREF--ESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKEFSGPRGLYS 470
            E L       GV    +G+ITPY+ Q   +         LR ++  ++I + +VD+FQG+E+D II+SCVR++ H G+GF+ D RR+NVALTRAR  + ++GN   L +   W  L+   K   C ++  +++L +         +F  PR +Y+
Sbjct:  794 EKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLR-QQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMV------QFQKPRKIYN 941          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SETX_MOUSE (Probable helicase senataxin OS=Mus musculus GN=Setx PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.586e-17
Identity = 43/106 (40.57%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS--HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380
            +GIIT YK Q   +Q++ E      + K    ++TVDAFQG+++D II++CVRAS+    +GF+A ++R+NV +TRA+ +L+++G+   L+++  W  LI DA+ R
Sbjct: 2318 IGIITHYKAQKTMIQKDLEKEF---DKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKR 2420          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.847e-17
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKA 377
            E +   +K L   KI   +ITPY  Q++ L+R FE      E   DI +NTVD FQG+E + I++S VR  +   GF+ D+RR+NVA+TRA+R L ++GN + L Q   +  +I  AK+
Sbjct:  541 EKVLEIVKKLVKYKIPTNVITPYDAQVRYLRRLFE------EHNIDIEVNTVDGFQGRENEAIVISFVR--TKNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKS 651          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: SETX_HUMAN (Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 1.189e-16
Identity = 41/106 (38.68%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS--HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380
            +GIIT YK Q   +Q++ +      + K    ++TVDAFQG+++D +I++CVRA+S    +GF+A ++R+NV +TRA+ +L+++G+   L+++  W  LI DA+ R
Sbjct: 2342 IGIITHYKAQKTMIQKDLDKEF---DRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKR 2444          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.378e-16
Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 3
Query:   21 EHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASAL 332
            EH++  ++S  VP+ ++G+I+PY  Q+  L++    ++  E    DI I+TVD FQG+E+DVII+S VR++    VGF+ + RR+NVA+TR RR L V+GN   L
Sbjct:  554 EHIE-NLRSFNVPENSIGVISPYNAQVSHLKK----LIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVL 653          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_SCHPO (ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=upf1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.861e-16
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 3
Query:   69 VGIITPYKLQLKCLQREFESVLRTEEGKRDIY----INTVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKE 443
            +GI+TPY  Q   + +  ++       ++D+Y    + +VDAFQG+E+D II+SCVR+S H G+GFV D RR+NVALTRA+  + V+GN   L +   W   +   K +   ++  ++SL K F+  L P +
Sbjct:  718 IGIVTPYDGQRSYIVQYMQN---NGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQK-FSLTLTPPQ 845          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: RENT1_DROME (Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 3.639e-16
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 3
Query:   51 GVPKITVGIITPYKLQLKCLQR--EFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASS-HGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD 395
            G+    +GIITPY+ Q   L +  +++  L +    ++I I +VDAFQG+E+D+IIMSCVR++   G+GF+ D RR+NVALTRA+  + ++GN   L +   W  L+   K R   ++
Sbjct:  764 GIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRL-YQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVE 880          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: ZGRF1_MOUSE (Protein ZGRF1 OS=Mus musculus GN=Zgrf1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.835e-16
Identity = 51/147 (34.69%), Postives = 79/147 (53.74%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR--------NCYMDMDSLPKDF 419
            F L+L + L  +    GV    +G+IT YK Q+  +     +V       + + ++TVDAFQG E+++ I+SCVR  +  VGF+   +RMNVALTR RR L ++G+ S L ++  W  +I   + R         C   +D L KD+
Sbjct: 1701 FTLKLIQSLMAS----GVESCMIGVITLYKSQMYKICNLLSAVDVGHPDVKAVQVSTVDAFQGAEKEITILSCVR--TRQVGFIDSEKRMNVALTRGRRHLLIVGSLSCLRKNRLWGRVIQHCEGREDGLQHASQCEPQLDHLLKDY 1841          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: ZGRF1_HUMAN (Protein ZGRF1 OS=Homo sapiens GN=ZGRF1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.407e-15
Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 3
Query:    3 FCLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKAR 380
            F L+L   +Q  I S G+    +G+IT YK Q+  L     +V       + + ++TVDAFQG E+++II+SCVR  +  VGF+   +RMNVALTR +R L ++GN + L ++  W  +I   + R
Sbjct: 1940 FTLKL---IQSLIAS-GIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVR--TRQVGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCEGR 2059          
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.428e-15
Identity = 67/244 (27.46%), Postives = 114/244 (46.72%), Query Frame = 3
Query:    6 CLRLYEHLQRTIKSLGVPKITVGIITPYKLQLKCLQREFESVLRTEEGKRDIYIN----TVDAFQGQERDVIIMSCVRASSH-GVGFVADIRRMNVALTRARRALWVMGNASALVQSDDWAALIADAKARNCYMD--MDSLPKDFTKDLLPKEFSGPRGLYSPSQGKASNMRGLRSAGPRHRSLDMHMESRSGTPSEDEDKSGTTVISRNGNYRPFKSPLDTFLDDFHPSGDKSREAWQYGILK 716
            C R+   L R     GV    +G+ITPY+ Q   +    + +       +D+YI     +VDAFQG+E+D II+SCVRA+    +GF+ D RR+NV LTRA+  L ++GN  +L ++  W  L+   + + C ++  +D+L     + + P+    PR    P   +                   ++ES  G   + +D    +++S +G    F    + F+D+   S   + E W +   K
Sbjct:  709 CERIITKLFRD----GVKPEQIGVITPYEGQRAYI---LQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTVQLVRPQ----PRKTERPMNAQ------------------FNVESEMGDFPKFQDFDAQSMVSFSGQIGDFG---NAFVDNTELSSYINNEYWNFENFK 920          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TUK1_GOSRA7.856e-16598.02Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2USZ4_GOSRA8.206e-16598.02Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FFE4_THECC1.922e-14287.30P-loop containing nucleoside triphosphate hydrolas... [more]
A0A061FG69_THECC3.925e-14287.30P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0D2TSW3_GOSRA2.223e-12580.95Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0MLJ7_GOSAR1.384e-12178.08SPBC29A10.10c: Uncharacterized ATP-dependent helic... [more]
W9RSI0_9ROSA2.434e-11976.89Uncharacterized protein OS=Morus notabilis GN=L484... [more]
M5XRW4_PRUPE1.229e-11775.70Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A5BNC8_VITVI1.872e-11776.19Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067EWL0_CITSI5.482e-11569.29Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011991 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RENT1_ARATH1.862e-1734.19Regulator of nonsense transcripts 1 homolog OS=Ara... [more]
SETX_MOUSE2.586e-1740.57Probable helicase senataxin OS=Mus musculus GN=Set... [more]
Y104_METJA7.847e-1741.18Uncharacterized ATP-dependent helicase MJ0104 OS=M... [more]
SETX_HUMAN1.189e-1638.68Probable helicase senataxin OS=Homo sapiens GN=SET... [more]
HCS1_YEAST1.378e-1643.81DNA polymerase alpha-associated DNA helicase A OS=... [more]
RENT1_SCHPO2.861e-1637.88ATP-dependent helicase upf1 OS=Schizosaccharomyces... [more]
RENT1_DROME3.639e-1639.83Regulator of nonsense transcripts 1 homolog OS=Dro... [more]
ZGRF1_MOUSE6.835e-1634.69Protein ZGRF1 OS=Mus musculus GN=Zgrf1 PE=2 SV=2[more]
ZGRF1_HUMAN1.407e-1538.10Protein ZGRF1 OS=Homo sapiens GN=ZGRF1 PE=2 SV=3[more]
NAM7_YEAST3.428e-1527.46ATP-dependent helicase NAM7 OS=Saccharomyces cerev... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13087AAA_12coord: 6..105
e-value: 2.8E-32
score: 111.8
NoneNo IPR availablePANTHERPTHR10887:SF359HELICASE SEN1coord: 1..249
NoneNo IPR availablePANTHERPTHR10887DNA2/NAM7 HELICASE FAMILYcoord: 1..249
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 44..108
e-value: 5.3E-6
score: 25.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..134

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011991 ID=g.arboreum_cottongen_reftransV1_0011991; Name=g.arboreum_cottongen_reftransV1_0011991; organism=Gossypium arboreum; type=contig; length=1854bp
TATTTTGTTTGCGCTTATATGAGCATCTACAGAGAACTATAAAATCTTTG
GGTGTGCCAAAAATCACAGTTGGTATAATAACACCATACAAGCTGCAATT
AAAATGCCTACAACGTGAGTTTGAGAGTGTTCTAAGGACAGAGGAAGGGA
AGAGGGATATCTATATTAATACTGTAGATGCTTTCCAGGGCCAGGAGCGT
GATGTTATTATTATGTCTTGTGTCCGTGCCTCAAGTCATGGGGTGGGCTT
TGTTGCAGATATTCGACGAATGAATGTTGCTCTTACTCGTGCTAGAAGGG
CTTTGTGGGTTATGGGTAATGCCAGTGCTCTGGTGCAATCAGATGACTGG
GCAGCCTTAATTGCTGATGCCAAAGCTAGGAATTGTTATATGGACATGGA
TTCTCTCCCCAAGGACTTCACAAAAGACTTGCTCCCCAAAGAATTTTCAG
GGCCAAGGGGACTTTACTCTCCATCACAGGGTAAGGCTTCTAATATGAGA
GGTTTAAGGTCTGCTGGACCAAGACATAGATCACTTGATATGCACATGGA
ATCCAGGTCAGGAACACCATCAGAGGATGAAGATAAGTCAGGCACAACTG
TAATTTCTAGGAATGGGAATTATCGGCCATTTAAGTCGCCACTGGATACT
TTTTTGGATGATTTTCATCCGTCAGGTGACAAATCTAGAGAGGCCTGGCA
ATATGGTATACTGAAGAAGCAAAATTCTGCTGGTACAATGGGGAAAAGAG
AGTCCTAGGCATTGGTTGTTGTCTACGAACTGTTTTGGCTCATGGCGGTC
CGTGGAGCAGAACTTTATTTATAATCCTTGCATTGAAATTTATGGAGCTC
TTAGCTCCATGAGTATTGAAACAATTTGTTGGAAGTTGGTGCCAGACTTG
TGTCTGATAATTGCCCTAAGATGAACAAGTTGAGAGGGATTTGCATGGGT
CACCAGTGAACTTTTGCCAGTCTGCCATGTTGATTCCTGCTAGGAAGTGG
ATGATCTGGGGGGTAGGATGTATGAGATCAAACCCTAGATCCACCCAGAC
AGGCTTCGAAGGAGTTGAATGCTGGCATTAAGAGTTGTGCCGCCCTACAA
TATCCCTTTGCTTGATAATTGATTGTTGCAATCTGCTATTACTTGGATGA
AGTCTTTAATCGATACAGTTGGGCAGTCATTTCAAATTCTGGTGCTCTTT
GACTTTTGTCCTTTTCCACAATACACTGAATGCATGGCCGACTCTTCAGT
TTGGGGATGTGAATTCTTTTGGATCTGTCAAATTTGAAGTTACATTCATC
AAATTTACAAATGCTTGCAAAATGTCAGAGGACGAGTAGCGATTCTTGAG
CGGGTGTGCTTTGCAGAATCCTAAGAATCAACCTCTATCAAAGTTGCCGT
ATATATTCTTTGAACATGGAGATGCACTTCGGTGATAACTTTTTAGTTCT
GCAGGATACGGGTTGGTTAACCAAGTATTCTTTGCTTTTGTTCTTTATGT
TAATTTTCCTTGGTTCTTTAAACCAAAAGACTTGGATAGAAATAGGACAC
ACCTCCAAAATTCTGTATAGAGAAGTAAGACTCCTAAAAGGGTACAGAAT
TGTGCGAGGAACTCTCATCTAGCTGACTTTGTGTATACAGCTTCAGGTGG
AACCAAAGAATTCTTTCTCAGCTGCGAAAAACCTCAGCTGCTGTTTTTTT
TTTTTTTTAAACTTGAAAACCATCAAATAATGGCCCAAGGTTTTAAACTA
TACTATTTGTTTTATTTTCCTATAATGAGATGTACTTTTCCTCAGATTGC
CATTACTTAAAAGTAATGCGGGGGATACAATTTATGTAGCGATGAACATA
TCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase