g.arboreum_cottongen_reftransV1_0013393, g.arboreum_cottongen_reftransV1_0013393 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013393
Unique Nameg.arboreum_cottongen_reftransV1_0013393
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0013393:1..531 .
Chr11:35214353..35214883 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: K7ZBK0_9GENT (Tetrapyrrole-binding protein (Fragment) OS=Galium verum f. pusillum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.920e-32
Identity = 57/82 (69.51%), Postives = 71/82 (86.59%), Query Frame = -2
Query:    6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFT 251
            D L+ HLS+QNF +ADEETRRLLI LAGEAA KR YVFF EV+FI E+DLKAIDELW++YS+ KFGYSVQ+++W+K N +F+
Sbjct:   78 DVLEQHLSSQNFREADEETRRLLIALAGEAAVKRGYVFFPEVKFIPESDLKAIDELWRKYSDGKFGYSVQRKVWKKLNCNFS 159          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: M0TWU2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.684e-32
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = -2
Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L  HLS+ +F QADEETRRLLI LAGEAAQKR YVFFSEVQFI  ADL+ ID+LW+++S  +FGY VQ+RLW+K+ +DFT+
Sbjct:   92 DVLASHLSSSDFRQADEETRRLLIALAGEAAQKRGYVFFSEVQFIPAADLQEIDQLWRRHSGGRFGYGVQRRLWEKSGRDFTR 174          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: W9S611_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002377 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.421e-31
Identity = 57/83 (68.67%), Postives = 71/83 (85.54%), Query Frame = -2
Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L+ HL+  +F QADEETRRLLI LAG+AAQKR YVFFSEVQ+I+E+DLKAIDELW+ +S+ KFGYSVQK+++ K N DFT+
Sbjct:   73 DLLRSHLAAGDFRQADEETRRLLIALAGDAAQKRGYVFFSEVQYITESDLKAIDELWRTFSDGKFGYSVQKKIFNKVNNDFTR 155          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: I3SZB3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.488e-31
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = -2
Query:    6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFT 251
            D L+  LS +NF +AD+ETRRLLI LAGE A KR YVFFSEVQFISE DLKAIDELW+++S+N+FGYSVQKR+++K +KDFT
Sbjct:   82 DLLRELLSARNFREADDETRRLLIALAGEPAIKRGYVFFSEVQFISETDLKAIDELWREHSDNRFGYSVQKRIFEKVDKDFT 163          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: S8DZL8_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05972 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.836e-31
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = -2
Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            + L+  LS  N+ QADEETRRLLIVLAG+AA KR YVFFSEVQFISE DL+ ID LW QYS+N+FGY  QK++W+K+N+DF+K
Sbjct:   14 ELLEELLSAGNYRQADEETRRLLIVLAGDAAVKRGYVFFSEVQFISEEDLREIDRLWAQYSDNRFGYRAQKQIWEKSNRDFSK 96          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: GUN4C_ARATH (Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.353e-29
Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = -2
Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L++HL  QNF QADEETRRLLI ++GEAA KR YVFFSEV+ IS  DL+AID LW ++S+ +FGYSVQ+++W K  KDFT+
Sbjct:   82 DVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTR 164          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YC53L_SYNY3 (Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0558 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.511e-16
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -2
Query:    3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245
            L+  L +Q+F  ADE TR  L  LAG  A +R++++F+EV+     DL  I+ LW  +SN  FG+SVQ+RLW  + K+FTK
Sbjct:   96 LQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRRLWLASGKEFTK 176          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_CYACA (Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.110e-13
Identity = 29/74 (39.19%), Postives = 54/74 (72.97%), Query Frame = -2
Query:   30 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW 251
            +TL+  LS  NFF+A++ T+++L+ LAGE +++R +++F++V  I+   +  ++ LW+ YS   FG+S+QKR+W
Sbjct:  103 ETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWELYSQGNFGFSIQKRIW 176          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PYRYE (Uncharacterized protein ycf53 OS=Pyropia yezoensis GN=ycf53 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.658e-12
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = -2
Query:    3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245
            L+  L+ ++  +AD+ T++ LI LAG  AQ R +++F++++ I   DL+ ID+LW  +S  KFG  VQ+++W    KD+ K
Sbjct:  102 LQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTIDKLWHTHSKGKFGLFVQRQIWLSVGKDWGK 182          
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PORPU (Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.110e-9
Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = -2
Query:    9 LSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDF 233
            L   N   AD+ T++ LI LAG   + R +++F++++ I   DL+ ID+LW  +S  KFG+ VQ+++W    K++
Sbjct:  107 LVQNNLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQRQIWLALEKNW 181          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K7ZBK0_9GENT3.920e-3269.51Tetrapyrrole-binding protein (Fragment) OS=Galium ... [more]
M0TWU2_MUSAM6.684e-3267.47Uncharacterized protein OS=Musa acuminata subsp. m... [more]
W9S611_9ROSA1.421e-3168.67Uncharacterized protein OS=Morus notabilis GN=L484... [more]
I3SZB3_LOTJA1.488e-3170.73Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
S8DZL8_9LAMI2.836e-3167.47Uncharacterized protein (Fragment) OS=Genlisea aur... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GUN4C_ARATH2.353e-2963.86Tetrapyrrole-binding protein, chloroplastic OS=Ara... [more]
YC53L_SYNY33.511e-1645.68Ycf53-like protein OS=Synechocystis sp. (strain PC... [more]
YCF53_CYACA1.110e-1339.19Uncharacterized protein ycf53 OS=Cyanidium caldari... [more]
YCF53_PYRYE4.658e-1238.27Uncharacterized protein ycf53 OS=Pyropia yezoensis... [more]
YCF53_PORPU1.110e-936.00Uncharacterized protein ycf53 OS=Porphyra purpurea... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008629GUN4-likePFAMPF05419GUN4coord: 70..158
e-value: 4.1E-31
score: 107.8
NoneNo IPR availablePANTHERPTHR34800FAMILY NOT NAMEDcoord: 1..158
NoneNo IPR availablePANTHERPTHR34800:SF1TETRAPYRROLE-BINDING PROTEIN, CHLOROPLASTICcoord: 1..158
NoneNo IPR availableSUPERFAMILY140869GUN4-likecoord: 71..157

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013393 ID=g.arboreum_cottongen_reftransV1_0013393; Name=g.arboreum_cottongen_reftransV1_0013393; organism=Gossypium arboreum; type=contig; length=531bp
AATTTGGTGAAGTCCTTGTTGGCTTTTTGCCACAACCTTTTCTGCACACT
GTAACCGAACTTGTTGTTGCTGTACTGTTTCCAGAGCTCGTCAATAGCTT
TGAGGTCAGCTTCGGAGATGAACTGGACCTCGGAGAAGAAGACATATCGG
CGTTTCTGAGCTGCTTCACCGGCTAGAACTATGAGCAAGCGGCGTGTCTC
TTCGTCGGCTTGGAAGAAGTTCTGAGTGGAAAGGTGGTGTTTGAGGGTGT
CAAAAGAGATAGGGTTGGAAGTGGTGGGGGTGGAGGAGGAAGTTGTAGGA
GAAAGAGAGAAAGTGGTGGTTGTGGAAGAGGTTGTGTTGGTAGTGGAGGA
GGAGGAAGAGGAGGGGTAGGGGTGGAGGAAAAGGGAGGAAGGTGGAAGGG
GGATGGATTCTGAGTTGGAGAGGCGTTTGAGGAAAGAGTATTGGTGGTGA
AGGGATGCTAGAGAGTGGGTGGTCATGGTTTGGGTTTGTGGTGGGAATAG
TGTGACAATTGGGAATGGTAAAGAGAGAAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008629GUN4-like