g.arboreum_cottongen_reftransV1_0013393, g.arboreum_cottongen_reftransV1_0013393 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0013393
Unique Name	g.arboreum_cottongen_reftransV1_0013393
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	531

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr11	chromosome	g.arboreum_cottongen_reftransV1_0013393:1..531 . Chr11:35214353..35214883 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A067E0D7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023340mg PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.588e-37
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = -2

Query:    6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFT 251
            D L  HL  QNF QADEETRRLLI LAGEA++KR YVFFSEVQFI+EADLKAIDELW+QYS+NKFGYSVQK++W+K NKDFT
Sbjct:   95 DLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFT 176

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: M5Y2H3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024953mg PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.652e-36
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = -2

Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L+ HLSTQNF +ADEETRRLLIVLAGE AQKR YVFFSE QFISEADLKAID+LW+Q+SNNKFGYSVQ++++ K + DFTK
Sbjct:   54 DLLQQHLSTQNFREADEETRRLLIVLAGEQAQKRGYVFFSEAQFISEADLKAIDDLWRQHSNNKFGYSVQRKIYGKVSNDFTK 136

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: I1LJQ0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.216e-34
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = -2

Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L+HHLS +NF  ADEETRRLLIVLAGEAAQKR YVFFSEV+FISE  L+AID LW++YS  KFGYSVQK+L +KAN DFTK
Sbjct:   82 DLLRHHLSNKNFELADEETRRLLIVLAGEAAQKRGYVFFSEVKFISEGGLRAIDSLWREYSGGKFGYSVQKKLLEKANGDFTK 164

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: K7LT63_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.865e-34
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = -2

Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L+HHLST NF  ADEETRRLLIVLAGEAAQKR YVFFSEV+FISE+ L+AID LW+++S  KFGYSVQK+L +KAN DFTK
Sbjct:  141 DLLRHHLSTNNFQLADEETRRLLIVLAGEAAQKRGYVFFSEVKFISESALRAIDSLWREHSGGKFGYSVQKKLLEKANGDFTK 223

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A072ULR7_MEDTR (Tetrapyrrole-binding protein OS=Medicago truncatula GN=MTR_4g067150 PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.306e-34
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = -2

Query:    3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245
            L+ HLS +NF +ADEETRRLLIVLAGEAAQKR YVFFSEVQFISE DLK ID+LW+ +S+NKFGYSVQK+L+ KA KDFTK
Sbjct:   82 LQQHLSAKNFREADEETRRLLIVLAGEAAQKRGYVFFSEVQFISEEDLKTIDQLWRDHSDNKFGYSVQKKLFGKAKKDFTK 162

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A0B2QZ96_GLYSO (Tetrapyrrole-binding protein, chloroplastic OS=Glycine soja GN=glysoja_010206 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.007e-34
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = -2

Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L+HHLS +NF  ADEETRRLLIVLAGEAAQKR YVFFSEV+FISE+ L+AID LW+++S  KFGYSVQK+L +KAN DFTK
Sbjct:   82 DLLRHHLSNKNFELADEETRRLLIVLAGEAAQKRGYVFFSEVKFISESALRAIDSLWREHSGGKFGYSVQKKLLEKANGDFTK 164

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: K4C948_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g073290.1 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.343e-34
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = -2

Query:    6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW-QKANKDFT 251
            DTL+ HL +QNF +ADEETRRLLIVLAGEAA KR YVFFSEVQFISE+DLK ID LW++YS+ KFGYSVQK++W  KAN+DFT
Sbjct:   73 DTLEQHLISQNFREADEETRRLLIVLAGEAAVKRGYVFFSEVQFISESDLKEIDSLWRKYSDGKFGYSVQKKIWNNKANRDFT 155

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A068UNL3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_42 OS=Coffea canephora GN=GSCOC_T00030601001 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.031e-33
Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = -2

Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L+ HLS ++F QADEETRRLLI+LAGEAAQKR YVFFSEVQFISE DL+ IDELW++ SN+K+GYSVQK++W K ++DFTK
Sbjct:   81 DLLQQHLSLKDFRQADEETRRLLIILAGEAAQKRGYVFFSEVQFISEDDLRTIDELWRKSSNDKYGYSVQKKIWNKVSRDFTK 163

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: V7AIL6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G054500g PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.048e-33
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = -2

Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L+HHLS++NF QADEETRRLLIVLAGEAAQKR YVFFSEVQFIS +DL  ID LW+++S NKFGYSVQKR+ +K + DFTK
Sbjct:  130 DLLRHHLSSKNFQQADEETRRLLIVLAGEAAQKRGYVFFSEVQFISGSDLITIDTLWREHSGNKFGYSVQKRILEKVDGDFTK 212

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: M1CKI7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027013 PE=4 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.279e-33
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = -2

Query:    6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQ-KANKDFT 251
            DTL+ HL +QNF +ADEETRRLLIVLAGEAA KR YVFFSEVQFISE+DLK ID LW++YS+ KFGYSVQK++W  K N+DFT
Sbjct:   72 DTLEQHLISQNFREADEETRRLLIVLAGEAAVKRGYVFFSEVQFISESDLKEIDSLWRKYSDGKFGYSVQKKIWNTKVNRDFT 154

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: GUN4C_ARATH (Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.353e-29
Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = -2

Query:    3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251
            D L++HL  QNF QADEETRRLLI ++GEAA KR YVFFSEV+ IS  DL+AID LW ++S+ +FGYSVQ+++W K  KDFT+
Sbjct:   82 DVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTR 164

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YC53L_SYNY3 (Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0558 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.511e-16
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -2

Query:    3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245
            L+  L +Q+F  ADE TR  L  LAG  A +R++++F+EV+     DL  I+ LW  +SN  FG+SVQ+RLW  + K+FTK
Sbjct:   96 LQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRRLWLASGKEFTK 176

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_CYACA (Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.110e-13
Identity = 29/74 (39.19%), Postives = 54/74 (72.97%), Query Frame = -2

Query:   30 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW 251
            +TL+  LS  NFF+A++ T+++L+ LAGE +++R +++F++V  I+   +  ++ LW+ YS   FG+S+QKR+W
Sbjct:  103 ETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWELYSQGNFGFSIQKRIW 176

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PYRYE (Uncharacterized protein ycf53 OS=Pyropia yezoensis GN=ycf53 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.658e-12
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = -2

Query:    3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245
            L+  L+ ++  +AD+ T++ LI LAG  AQ R +++F++++ I   DL+ ID+LW  +S  KFG  VQ+++W    KD+ K
Sbjct:  102 LQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTIDKLWHTHSKGKFGLFVQRQIWLSVGKDWGK 182

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PORPU (Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.110e-9
Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = -2

Query:    9 LSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDF 233
            L   N   AD+ T++ LI LAG   + R +++F++++ I   DL+ ID+LW  +S  KFG+ VQ+++W    K++
Sbjct:  107 LVQNNLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQRQIWLALEKNW 181

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067E0D7_CITSI	3.588e-37	79.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
M5Y2H3_PRUPE	5.652e-36	77.11	Uncharacterized protein (Fragment) OS=Prunus persi...	[more]
I1LJQ0_SOYBN	1.216e-34	75.90	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
K7LT63_SOYBN	4.865e-34	75.90	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A072ULR7_MEDTR	5.306e-34	77.78	Tetrapyrrole-binding protein OS=Medicago truncatul...	[more]
A0A0B2QZ96_GLYSO	8.007e-34	74.70	Tetrapyrrole-binding protein, chloroplastic OS=Gly...	[more]
K4C948_SOLLC	8.343e-34	75.90	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
A0A068UNL3_COFCA	1.031e-33	72.29	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
V7AIL6_PHAVU	1.048e-33	74.70	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
M1CKI7_SOLTU	3.279e-33	74.70	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
GUN4C_ARATH	2.353e-29	63.86	Tetrapyrrole-binding protein, chloroplastic OS=Ara...	[more]
YC53L_SYNY3	3.511e-16	45.68	Ycf53-like protein OS=Synechocystis sp. (strain PC...	[more]
YCF53_CYACA	1.110e-13	39.19	Uncharacterized protein ycf53 OS=Cyanidium caldari...	[more]
YCF53_PYRYE	4.658e-12	38.27	Uncharacterized protein ycf53 OS=Pyropia yezoensis...	[more]
YCF53_PORPU	1.110e-9	36.00	Uncharacterized protein ycf53 OS=Porphyra purpurea...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008629	GUN4-like	PFAM	PF05419	GUN4	coord: 70..158 e-value: 4.1E-31 score: 107.8
None	No IPR available	PANTHER	PTHR34800	FAMILY NOT NAMED	coord: 1..158
None	No IPR available	PANTHER	PTHR34800:SF1	TETRAPYRROLE-BINDING PROTEIN, CHLOROPLASTIC	coord: 1..158
None	No IPR available	SUPERFAMILY	140869	GUN4-like	coord: 71..157

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0013393 ID=g.arboreum_cottongen_reftransV1_0013393; Name=g.arboreum_cottongen_reftransV1_0013393; organism=Gossypium arboreum; type=contig; length=531bp
AATTTGGTGAAGTCCTTGTTGGCTTTTTGCCACAACCTTTTCTGCACACT
GTAACCGAACTTGTTGTTGCTGTACTGTTTCCAGAGCTCGTCAATAGCTT
TGAGGTCAGCTTCGGAGATGAACTGGACCTCGGAGAAGAAGACATATCGG
CGTTTCTGAGCTGCTTCACCGGCTAGAACTATGAGCAAGCGGCGTGTCTC
TTCGTCGGCTTGGAAGAAGTTCTGAGTGGAAAGGTGGTGTTTGAGGGTGT
CAAAAGAGATAGGGTTGGAAGTGGTGGGGGTGGAGGAGGAAGTTGTAGGA
GAAAGAGAGAAAGTGGTGGTTGTGGAAGAGGTTGTGTTGGTAGTGGAGGA
GGAGGAAGAGGAGGGGTAGGGGTGGAGGAAAAGGGAGGAAGGTGGAAGGG
GGATGGATTCTGAGTTGGAGAGGCGTTTGAGGAAAGAGTATTGGTGGTGA
AGGGATGCTAGAGAGTGGGTGGTCATGGTTTGGGTTTGTGGTGGGAATAG
TGTGACAATTGGGAATGGTAAAGAGAGAAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR008629	GUN4-like

Search form

g.arboreum_cottongen_reftransV1_0013393, g.arboreum_cottongen_reftransV1_0013393 (contig) Gossypium arboreum

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