g.arboreum_cottongen_reftransV1_0021466, g.arboreum_cottongen_reftransV1_0021466 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0021466
Unique Name	g.arboreum_cottongen_reftransV1_0021466
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	960

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr11	chromosome	g.arboreum_cottongen_reftransV1_0021466:1..960 . Chr11:80974326..80977436 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: M5W395_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010980mg PE=4 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 1.361e-113
Identity = 157/228 (68.86%), Postives = 192/228 (84.21%), Query Frame = -2

Query:  192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875
            MEG       +NGE LG CL+G VDDGS ESHRY+LSRRTVLEM+RDRGY+VP++EIDLSL +FRA+HGQ+PD +RL+ S TH+TD S R++V++ GPG+VKV+ IR +   I +K+TL GLILI QN IT+QALK ++L+ FK EIFQITDLLVNITKHVLKP+H VLTE EKQ+LL+KY+IEE QLPRL +KDAIA+YYG EKGQV+KVTY G+ITESHVTYRC+W
Sbjct:    1 MEGDAEANGDANGEILGPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSSEIDLSLQDFRALHGQNPDVERLRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIANKDTLNGLILITQNQITSQALKTMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQKLLKKYNIEENQLPRLSRKDAIAQYYGLEKGQVVKVTYTGDITESHVTYRCIW 228

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A067DXG6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026620mg PE=4 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 2.749e-112
Identity = 160/230 (69.57%), Postives = 198/230 (86.09%), Query Frame = -2

Query:  192 VKMEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 881
            ++MEG    G+G NGE    CLSG VD+GS +S RY+LSRRTVLEML+DRGYAV  +EI+LS+ +FRAI+GQ PD DRL++S++H++D SKR+LVVF GPG+VKV+ IR I   I +++TLTGLILI+QN IT+QA KA+ LF FKVE+FQITDLLVNITKHVLKP+H+VLT+ EK++LL+KYSIEEKQLPR+LKKDAIA+YYG E+GQV+KVTY GEITESHVTYRCVW
Sbjct:   11 MEMEG----GNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: V4VQR1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021999mg PE=4 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 2.749e-112
Identity = 160/230 (69.57%), Postives = 198/230 (86.09%), Query Frame = -2

Query:  192 VKMEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 881
            ++MEG    G+G NGE    CLSG VD+GS +S RY+LSRRTVLEML+DRGYAV  +EI+LS+ +FRAI+GQ PD DRL++S++H++D SKR+LVVF GPG+VKV+ IR I   I +++TLTGLILI+QN IT+QA KA+ LF FKVE+FQITDLLVNITKHVLKP+H+VLT+ EK++LL+KYSIEEKQLPR+LKKDAIA+YYG E+GQV+KVTY GEITESHVTYRCVW
Sbjct:   11 MEMEG----GNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A059A175_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01636 PE=4 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.594e-111
Identity = 152/217 (70.05%), Postives = 189/217 (87.10%), Query Frame = -2

Query:  192 NGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 842
            NG+A  +C+S  VD+GS +SHRY+L+RRT+LEMLRDRGYA+P+++ID+SL EFRA HGQSPD DRL++S + ++D SKR+LV F  PG VKV+ IR I+G I +K+ L+GLIL++Q  +TNQALKALDLF FKV++FQITDLLVNITKHVLKP+HRVLT+ EKQRLL+KYSI+EKQLPR+LK DAIARYYG EKGQV+KVTY G+IT +HVTYRCVW
Sbjct:   22 NGQARPRCMSSYVDEGSVQSHRYYLARRTLLEMLRDRGYAIPSSDIDVSLAEFRATHGQSPDIDRLRISNSLRSDPSKRVLVYFCNPGPVKVTSIRYISGQIANKDGLSGLILVLQGEMTNQALKALDLFPFKVQVFQITDLLVNITKHVLKPKHRVLTDQEKQRLLKKYSIQEKQLPRMLKNDAIARYYGLEKGQVVKVTYSGDITGTHVTYRCVW 238

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: I1JN69_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.591e-110
Identity = 155/210 (73.81%), Postives = 188/210 (89.52%), Query Frame = -2

Query:  192 CLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 821
            CLS  VD+GS ESHRY+LSRRT LEML+DRGY++P+ EIDLSL +FR +HGQ PD DRL+LS+TH T+SSKR+LV+F GPGVVKV+ IR IAG I +++TLTGLILIV+NHIT+QALKA++LFSFKVEIFQITDLLVNITKHVLKP+H+VLT+ +K  LL+KY+IEEKQLPR+L+ DAIARYYG E+GQV+KVTY GE+T+ HVTYRCVW
Sbjct:   27 CLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDMHGQFPDPDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNIAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 236

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A0B2REV0_GLYSO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Glycine soja GN=glysoja_025868 PE=4 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.591e-110
Identity = 155/210 (73.81%), Postives = 188/210 (89.52%), Query Frame = -2

Query:  192 CLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 821
            CLS  VD+GS ESHRY+LSRRT LEML+DRGY++P+ EIDLSL +FR +HGQ PD DRL+LS+TH T+SSKR+LV+F GPGVVKV+ IR IAG I +++TLTGLILIV+NHIT+QALKA++LFSFKVEIFQITDLLVNITKHVLKP+H+VLT+ +K  LL+KY+IEEKQLPR+L+ DAIARYYG E+GQV+KVTY GE+T+ HVTYRCVW
Sbjct:   27 CLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDMHGQFPDPDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNIAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 236

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: C6SXN9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 5.047e-110
Identity = 155/210 (73.81%), Postives = 187/210 (89.05%), Query Frame = -2

Query:  192 CLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 821
            CLS  VD+GS ESHRY+LSRRT LEML+DRGY++P+ EIDLSL +FR IHGQ PD DRL+LS+TH T+SSKR+LV+F GPGVVKV+ IR  AG I +++TLTGLILIV+NHIT+QALKA++LFSFKVEIFQITDLLVNITKHVLKP+H+VLT+ +K  LL+KY+IEEKQLPR+L+ DAIARYYG E+GQV+KVTY GE+T+ HVTYRCVW
Sbjct:   28 CLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A068UM26_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_39 OS=Coffea canephora GN=GSCOC_T00028911001 PE=4 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 6.633e-109
Identity = 153/217 (70.51%), Postives = 186/217 (85.71%), Query Frame = -2

Query:  192 NGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 842
            +GE+  +CLS  +D+GS ESHRY+LSRRTVLEMLRDRG+ VPN+EI LSL +FR  +GQ PD DRL++S  HK D S ++LV+F GP VVKV+ IR IA  I +K+TL+ LILIVQNHIT+QA+KA+DL  FKVEIFQITDLLVN+TKHVLKP+H++LTE EKQRLL+KY+IE+KQLPR+L+KDAIARYYG EKGQV+KVTY  EITE+HVTYRCVW
Sbjct:   12 DGESYPRCLSSYIDEGSIESHRYYLSRRTVLEMLRDRGFLVPNSEIGLSLQDFRNNYGQQPDIDRLRISALHKDDPSNKILVLFCGPNVVKVNVIRGIANQIMNKDTLSRLILIVQNHITSQAMKAVDLLPFKVEIFQITDLLVNVTKHVLKPKHQLLTEEEKQRLLEKYNIEDKQLPRMLQKDAIARYYGLEKGQVLKVTYNNEITETHVTYRCVW 228

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A0A0LCG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822200 PE=4 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 9.280e-109
Identity = 156/228 (68.42%), Postives = 184/228 (80.70%), Query Frame = -2

Query:  192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875
            ME  G E +  N    G CLS  +DDG+TESHRYFLSRRTV+EML+DRGY + +  ID SL +FR   GQ PD DRLKLS  H +D SKR+LVVF G G VKV+ IR IAG I +K++L GLILIVQN ITNQA+KA++LFSFKVEIFQITDLLVNITKH LKP H+VLTE EKQ+LL++YSIEEKQLPR+L+ DAIARYYG EKGQV+KVTY G++T +H+TYRCVW
Sbjct:    1 MEEDGFEAE-PNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: V7CXU1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G125200g PE=4 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 1.839e-108
Identity = 150/210 (71.43%), Postives = 186/210 (88.57%), Query Frame = -2

Query:  192 CLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 821
            CLS  +DDG+ ESHRY+LSRRT LEML+DRGY++P+ EIDLSL +FR +HG SPD DRL+LS+ H T+ SKR+LV+F GPGVVKV+ IR IAG I +++TL+GLILIV+NH+T+QALKA+ LFSFKVEIFQITDLLVNITKHVLKP+H+VLT+ +K+ LL+K++IEEKQLPR+L+ DAIARYYG E+GQV+KVTY GEIT+ HVTYRCVW
Sbjct:   33 CLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLSLSQFRHMHGHSPDPDRLRLSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLSGLILIVENHVTSQALKAVGLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW 242

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPE5A_ARATH (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana GN=NRPE5A PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 5.800e-101
Identity = 138/210 (65.71%), Postives = 175/210 (83.33%), Query Frame = -2

Query:  192 CLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 821
            CLS  VD  S ESHRY+L+RR  L+MLRDRGY V + +I+LSLH+FR ++G+ PD DRL++S  H++DS+K++ +VF+G  +VKV+ IR +   I S+ET+TGLIL++QNH+TNQALKA++LFSFKVEIFQITDLLVNITKH LKPQH+VL + EK  LL+K+SIEEKQLPR+ KKDAI RYYG EKGQV+KV Y GE+TESHV +RCVW
Sbjct:   13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPD5B_ARATH (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana GN=NRPD5B PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.673e-91
Identity = 126/204 (61.76%), Postives = 169/204 (82.84%), Query Frame = -2

Query:  195 VDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 806
            +   S E H+Y+L+RRT +EMLRDRGY V + +I+LSL +FRA++G+ PD D L++S  H+ DSSK++ VVF G G+VKV+ +R+IA  + S+E +TGLIL++Q+HITNQALKA++LFSFKVE+F+ITDLLVN++KHVL+P+H+VL + EK+ LL+K+SIEEKQLPRL  KD I RYYG E GQV+KVTY  E++ESHVTYRCV
Sbjct:   14 ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPE5C_ARATH (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana GN=NRPE5C PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.305e-60
Identity = 97/219 (44.29%), Postives = 144/219 (65.75%), Query Frame = -2

Query:  195 DGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 851
            DG+N      C+S   D G  ES R++L+R T  EMLRDRGY V   E+ L+L EFR++ G+ P+ +RL++ V  ++D  K++LVVF G   + V  +R +   I++   L  +IL++Q+ + + A KAL  F F VE F I DLLVNITKH+ +P+  +L + EK++LL+K+++E+KQLP L +KD+  RYYG +K QV+K+TY  E     VTYRC+
Sbjct:   20 DGTN------CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.643e-34
Identity = 71/200 (35.50%), Postives = 120/200 (60.00%), Query Frame = -2

Query:  195 ESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFS--FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 788
            E  R +  ++T+++MLRDRGY + ++E+ ++  +F   HG +   + L      + D+S ++ + F     V V  +++    + S E +   IL+VQ ++T  A   +   S  F +E+FQ  ++LVNI +HVL P+H+VLT  EK+ LL++Y+++E QLPR+   D IARY+G ++GQV+K+    E    +VTYR V
Sbjct:    6 ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKS-ENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.428e-33
Identity = 73/209 (34.93%), Postives = 117/209 (55.98%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+T++++  DRGY V   E+D +L EFRA  G  P   R     L + V H  D + +M V F     V +  I++    +  +E +T  +++VQ  +T  A ++L   + K  +E F   +LL+NIT+H L P+H V+T+ E   LL +Y + E QLPR+   D +ARY+G ++GQV+K+    E    ++TYR V
Sbjct:    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 1.084e-32
Identity = 72/209 (34.45%), Postives = 117/209 (55.98%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+T++++  DRGY V   E+D +L EF+A  G  P   R     L + V H  D + +M V F     V +  I++    +  +E +T  +++VQ  +T  A ++L   + K  +E F   +LL+NIT+H L P+H V+T+ E   LL +Y + E QLPR+   D +ARY+G ++GQV+K+    E    ++TYR V
Sbjct:    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.201e-32
Identity = 72/209 (34.45%), Postives = 118/209 (56.46%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFS-FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+T++++  DRGY V   E+D +L EF+A  G  P   R     L + V H  D + +M V F     V +  I++    +  +E +T  +++VQ  +T  A ++L D+   + +E F   +LL+NIT+H L P+H V+T+ E   LL +Y + E QLPR+   D +ARY+G ++GQV+K+    E    ++TYR V
Sbjct:    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.201e-32
Identity = 72/209 (34.45%), Postives = 118/209 (56.46%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFS-FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+T++++  DRGY V   E+D +L EF+A  G  P   R     L + V H  D + +M V F     V +  I++    +  +E +T  +++VQ  +T  A ++L D+   + +E F   +LL+NIT+H L P+H V+T+ E   LL +Y + E QLPR+   D +ARY+G ++GQV+K+    E    ++TYR V
Sbjct:    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.218e-32
Identity = 70/209 (33.49%), Postives = 117/209 (55.98%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+TVL+M+ DRGY V   E+D  L  F+  +G  P   +     L + V H  D + +M V F     + +  I+ I   +  ++ ++  I++VQ  +T  A +++   + K  +E F   +L+VNIT+H L P+H V+T  EK  LL +Y +++ QLPR+ + D +ARY+G  +GQV+K+    E    ++TYR V
Sbjct:    3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.473e-32
Identity = 73/211 (34.60%), Postives = 118/211 (55.92%), Query Frame = -2

Query:  195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLI--TSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800
            D   E++R +  R+TVL+M+ DRGY V   E+D  L  F+   G  P   +     L + V H  D + +M V F  P   K+ GI+ I  +     ++ ++  I++VQ  +T  A +++   + K  +E F   +L+VNIT+H L P+H V+T  EK  LL +Y +++ QLPR+ + D +ARY+G  +GQV+K+    E    ++TYR V
Sbjct:    3 DDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHNDDPADQMFVFF--PEDTKI-GIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
M5W395_PRUPE	1.361e-113	68.86	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A067DXG6_CITSI	2.749e-112	69.57	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4VQR1_9ROSI	2.749e-112	69.57	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A059A175_EUCGR	3.594e-111	70.05	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
I1JN69_SOYBN	1.591e-110	73.81	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2REV0_GLYSO	1.591e-110	73.81	DNA-directed RNA polymerases I, II, and III subuni...	[more]
C6SXN9_SOYBN	5.047e-110	73.81	Putative uncharacterized protein OS=Glycine max PE...	[more]
A0A068UM26_COFCA	6.633e-109	70.51	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
A0A0A0LCG9_CUCSA	9.280e-109	68.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
V7CXU1_PHAVU	1.839e-108	71.43	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RPE5A_ARATH	5.800e-101	65.71	DNA-directed RNA polymerase V subunit 5A OS=Arabid...	[more]
RPD5B_ARATH	6.673e-91	61.76	DNA-directed RNA polymerases IV and V subunit 5B O...	[more]
RPE5C_ARATH	2.305e-60	44.29	DNA-directed RNA polymerase V subunit 5C OS=Arabid...	[more]
RPB5A_ARATH	4.643e-34	35.50	DNA-directed RNA polymerases II and IV subunit 5A ...	[more]
RPAB1_PONAB	3.428e-33	34.93	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB1_HUMAN	1.084e-32	34.45	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB1_RAT	1.201e-32	34.45	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB1_MOUSE	1.201e-32	34.45	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB1_CAEEL	1.218e-32	33.49	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB1_CAEBR	2.473e-32	34.60	DNA-directed RNA polymerases I, II, and III subuni...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005571	RNA polymerase, Rpb5, N-terminal	GENE3D	3.40.1340.10		coord: 32..162 e-value: 9.7E-30 score: 102.9
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 36..117 e-value: 2.1E-19 score: 69.7
IPR005571	RNA polymerase, Rpb5, N-terminal	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 36..163
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 30..235 e-value: 4.5E-75 score: 249.3
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 162..234 e-value: 3.3E-28 score: 97.2
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	GENE3D	3.90.940.20		coord: 163..235 e-value: 4.9E-28 score: 96.1
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PRODOM	PD005155		coord: 169..234 e-value: 1.0E-20 score: 245.0
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 160..235
None	No IPR available	PANTHER	PTHR10535:SF2	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED	coord: 33..235
None	No IPR available	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 33..235

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0021466 ID=g.arboreum_cottongen_reftransV1_0021466; Name=g.arboreum_cottongen_reftransV1_0021466; organism=Gossypium arboreum; type=contig; length=960bp
GCCAACAGACATTATAGATTTCAAAGTAAAATTAAATAAGAATCCACTCA
ATCAGTGTTCATAAAACAGCAAACAAAGGTCGGAAGCCCCATAGAAAGGT
TTGGGAAACCACTTCTGAAAGAAAACTACAAACGCAATTTTCCTACAGGA
AGAAACATAAAGAAAAGCGACAGCATTGATTTGTTTCATCACCAGACGCA
TCGATAAGTAACATGTGACTCAGTGATTTCACCCCCATATGTAACTTTTA
TCACCTGACCCTTTTCAAAACCGTAGTATCTTGCAATGGCATCTTTTTTT
AACAGTCGAGGGAGCTGTTTTTCTTCTATGCTGTACTTCTGCAATAGTCT
TTGTTTCTCATGTTCTGTTAGTACCCGGTGCTGGGGCTTCAGCACATGCT
TTGTGATATTAACAAGTAGGTCAGTAATCTGGAATATCTCCACCTTAAAT
GAGAAAAGGTCTAAAGCTTTCAAAGCTTGGTTTGTTATGTGGTTTTGCAC
GATTAATATCAACCCGGTCAAAGTTTCTTTGCTAGTAATTAGACCAGCAA
TGAGCCGAATCCCACTGACTTTAACTACACCAGGCCCATAGAAAACTACC
AGCATCCGCTTGGAAGAGTCAGTTTTATGAGTAACAGAGAGTTTGAGACG
ATCAAAATCAGGGCTTTGGCCATGAATGGCACGAAATTCATGGAGAGAGA
GGTCGATTTCAGTGTTGGGTACGGCATAGCCTCTGTCCCTAAGCATCTCC
AGCACAGTTCTCCGGGACAGGAAGTATCGATGACTCTCGGTGCTACCATC
GTCCACCAACCCACTCAAGCACTTCCCAAGAGCTTCCCCGTTTGACCCAT
CTCCTTCCAATCCAATCCCTTCCATTTTCACTTTTACTTCAACCAGTCTA
CGAGTTCAGTATTTACACGACTTAACTACGCTTCCGCTTCGTTTTCCTCG
ACTGTCTCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005571	RNA_pol_Rpb5_N
IPR014381	Arch_Rpo5/euc_Rpb5
IPR000783	RNA_pol_subH/Rpb5_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed 5'-3' RNA polymerase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	DNA-templated transcription

Search form

g.arboreum_cottongen_reftransV1_0021466, g.arboreum_cottongen_reftransV1_0021466 (contig) Gossypium arboreum

Pages

Pages