g.arboreum_cottongen_reftransV1_0005590, g.arboreum_cottongen_reftransV1_0005590 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: A0A0D2RDH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110900 PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.201e-36 Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = 2 Query: 1229 DLNGEKADMDHPCVEQICEDEDEIFNISLKKNLFLSSQHMASQDPVQNADWTEQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGL 1615 D+N + PC++Q+ E+EDE NI++K++LFLSSQ S+DPV A T+QN CVKCN +G++L+C SS +AVH SCL AR+DDKG+FLCPFCACS+S S YLE K++IILARK +VA + L Sbjct: 151 DVNVATRTFERPCMDQLRENEDERLNIAMKRSLFLSSQSRPSKDPVGKAGPTKQNLCVKCNLSGKVLICGSSDSAVAVHRSCLGSSARYDDKGNFLCPFCACSLSNSKYLEGKDRIILARKNVVALVEL 279 HSP 2 Score: 115.931 bits (289), Expect = 6.788e-25 Identity = 64/139 (46.04%), Postives = 76/139 (54.68%), Query Frame = 2 Query: 98 GPMFRPYSYGPRAAWLWIIEYVSSFPQLDISIISGLIETAPILPEDLEENTSERVALRCLEELFGPQNSHGSVAPVSRAVLNPSASCDDVLDHILYHILQKVPLSDLKNAGPELLRWDGHSFIEHKRATLPKCALEQLK 514 GP+F S GP WLW IEY+SSFP LD+SI+ AP+ P++ ENT+ERVALRCLEE P+N V S LK AGPEL+RWD FI HK+A LPKC+LEQLK Sbjct: 5 GPIFSFRSDGPCLTWLWSIEYLSSFPHLDLSIV-----PAPVSPDESGENTTERVALRCLEEPIVPENG--------------------------------VSFSSLKKAGPELVRWDVQPFIMHKKALLPKCSLEQLK 106
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: K7KHF0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 2.694e-32 Identity = 109/327 (33.33%), Postives = 159/327 (48.62%), Query Frame = 2 Query: 1385 EQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGLMGKLIQ---------EQGRSWN---------HSKLNGNENLAGIQ------------ESGHLGREHEHKQEE---------LPAKLKTSDDNPTTENTETFPINQVEVEGDDILKEVVGPQITDASQKLVNSDG------------EESSTSADDKYIISSHSTRSKKSETR------QSFSPTRRLRRKKAPWTNDEEEMLRKGVQELANEDGTVPWKRILEFGTNVF---LMDRTATDLKNKWRSMCK 2185 EQN C+KC++ G+LL C ++ C L VH++CL A+ D KG+F CPFCA S +IS YLE+K LARK+L F+ GKLIQ Q ++ H K N ++ LAG + E+ L E +Q E +P + + T++ + ++ E +I E ++ K N DG E+ S +K+ +S R +K ET+ Q F +LRRKK PWT +EEE +++GVQ+ E WK+IL+FG++VF RT DLK+KWR+MCK Sbjct: 392 EQNLCMKCHEGGQLLACKTTTCPLMVHKNCLGASAQLDAKGNFFCPFCAYSHAISEYLESKENASLARKELAIFIS-KGKLIQAAEFVHEFHRQEHCFSRKNSKCEHIHVKNNEDDQLAGCEDNREDHVGEHANEANDLQFERSKQQAEVLREEEIGKMPTVGRVEESEVPTDHVDGHVGDKFASEKTNIAPESNAEEVPQEMTKQHNIDGTIEPVCAQDTGKEKISEDESEKHSNPLYSLRFRKHETQCKPQAGQVFL-GNQLRRKKIPWTAEEEEKIKEGVQKFGKE-----WKKILQFGSHVFDKVGKRRTPHDLKDKWRNMCK 711 HSP 2 Score: 101.679 bits (252), Expect = 7.048e-19 Identity = 59/134 (44.03%), Postives = 76/134 (56.72%), Query Frame = 2 Query: 137 AWLWIIEYVSSFPQLDISIISGLIETAPILPEDLEENTSERVALRCLEEL----FGPQNSHGSVAPVSRAVLNPSASCDDVLDHILYHILQKVPLSDLKNAGPELLRWDGHSFIEHKRATLPKCALEQLKDVIL 526 AWLW+IE + + ++ + G I+ AP+ +NT E VALRCLE+L P+ S SR N SC DVL IL K+PLS+LK AG ELL+WD FI+HKRA KC LEQL++ I Sbjct: 11 AWLWVIEALLTSKEITTPTLQGFIDAAPVGHHRFSKNTKELVALRCLEKLSTLVVDPE---ASSNLDSRFGFNVLGSCQDVLKEIL----GKIPLSNLKVAGAELLKWDICPFIKHKRAVTFKCHLEQLRESIF 137
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: A0A0B2RPD2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_013688 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 2.694e-32 Identity = 109/327 (33.33%), Postives = 159/327 (48.62%), Query Frame = 2 Query: 1385 EQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGLMGKLIQ---------EQGRSWN---------HSKLNGNENLAGIQ------------ESGHLGREHEHKQEE---------LPAKLKTSDDNPTTENTETFPINQVEVEGDDILKEVVGPQITDASQKLVNSDG------------EESSTSADDKYIISSHSTRSKKSETR------QSFSPTRRLRRKKAPWTNDEEEMLRKGVQELANEDGTVPWKRILEFGTNVF---LMDRTATDLKNKWRSMCK 2185 EQN C+KC++ G+LL C ++ C L VH++CL A+ D KG+F CPFCA S +IS YLE+K LARK+L F+ GKLIQ Q ++ H K N ++ LAG + E+ L E +Q E +P + + T++ + ++ E +I E ++ K N DG E+ S +K+ +S R +K ET+ Q F +LRRKK PWT +EEE +++GVQ+ E WK+IL+FG++VF RT DLK+KWR+MCK Sbjct: 392 EQNLCMKCHEGGQLLACKTTTCPLMVHKNCLGASAQLDAKGNFFCPFCAYSHAISEYLESKENASLARKELAIFIS-KGKLIQAAEFVHEFHRQEHCFSRKNSKCEHIHVKNNEDDQLAGCEDNREDHVGEHANEANDLQFERSKQQAEVLREEEIGKMPTVGRVEESEVPTDHVDGHVGDKFASEKTNIAPESNAEEVPQEMTKQHNIDGTIEPVCAQDTGKEKISEDESEKHSNPLYSLRFRKHETQCKPQAGQVFL-GNQLRRKKIPWTAEEEEKIKEGVQKFGKE-----WKKILQFGSHVFDKVGKRRTPHDLKDKWRNMCK 711 HSP 2 Score: 101.679 bits (252), Expect = 7.048e-19 Identity = 59/134 (44.03%), Postives = 76/134 (56.72%), Query Frame = 2 Query: 137 AWLWIIEYVSSFPQLDISIISGLIETAPILPEDLEENTSERVALRCLEEL----FGPQNSHGSVAPVSRAVLNPSASCDDVLDHILYHILQKVPLSDLKNAGPELLRWDGHSFIEHKRATLPKCALEQLKDVIL 526 AWLW+IE + + ++ + G I+ AP+ +NT E VALRCLE+L P+ S SR N SC DVL IL K+PLS+LK AG ELL+WD FI+HKRA KC LEQL++ I Sbjct: 11 AWLWVIEALLTSKEITTPTLQGFIDAAPVGHHRFSKNTKELVALRCLEKLSTLVVDPE---ASSNLDSRFGFNVLGSCQDVLKEIL----GKIPLSNLKVAGAELLKWDICPFIKHKRAVTFKCHLEQLRESIF 137
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: M1BJ48_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018039 PE=4 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 4.269e-31 Identity = 107/332 (32.23%), Postives = 154/332 (46.39%), Query Frame = 2 Query: 1235 NGEKADMDHPCVEQICEDE---------DEIFNISLKKNLFLSSQHMASQDPVQNADWTEQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGLMGKLIQEQG--RSWNHSKLNGNENLAGIQESGHLGRE--HEHKQEELPAKLKTSDDNPTTENTETFPINQVEVEGDDILKEVVGPQITDASQKLVNSDGEESSTSADDKYIISSHSTRSKKSETRQSFSPTRRLRRKKAPWTNDEEEMLRKGVQELANEDGTVPWKRILEFGTNVFLMDRTATDLKNKWRSMCKDS 2191 NGE ++ D +EQ E E +E +++ +KN FL+ Q+ +D + TE N CVKC++ G LLVC+S C L VHESCL F KG F CPFC S IS LE K K LA+ L AF+GL ++ RS K E+ G+ +E++ + K + P T N+ + Q+ PQ + + + EE +Y + S +++ +LRRK PWT EE+ L++G L D WKRIL FG +VFL RT+ DLK+KWR++ + S Sbjct: 391 NGEPSNADKENIEQSRESEFSGDTDKYHNESTDLASQKNDFLNLQYAQGEDSLATVGCTELNICVKCHEGGNLLVCSSETCSLVVHESCLGSVFNFYYKGSFYCPFCTYSRVISENLEGKKKASLAKNDLTAFIGLGAGQQSKKSLPRSQGMKKHQYQEDTIVQLCRNVKGKNSLNENRNKNSLEKDGEARSRPVTTNSMRAKVTQIHP-----------PQPHVPHEHVCQENSEEEQDEIGSRYHVQS------RNQVNNPCPWIPKLRRKNLPWTKMEEKTLKEGF--LRFSDCGDRWKRILAFGGDVFLKARTSGDLKDKWRNISRAS 703 HSP 2 Score: 106.301 bits (264), Expect = 2.595e-20 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 2 Query: 140 WLWIIEYVSSFPQLDISIISGLIETAPILPEDLEENTSERVALRCLEELFGPQNSHG-SVA--PVSRAVLNPSASCDDVLDHILYHILQKVPLSDLKNAGPELLRWDGHSFIEHKRATLPKCALEQLKDVIL 526 W+W+IE +++ ++D S++ L++ P + +DL N E V+LR LE LF +NS SVA P + L+PS C+DVL IL +V S+LK A P++L+WD SFI KR+ LPKC L+Q KD I+ Sbjct: 23 WIWVIEALATSSEIDTSLLINLLKRTPEISDDLGRNAREMVSLRVLESLFVQKNSDANSVASVPGEKVELDPSRDCEDVLRCILL----EVSASNLKTATPDMLKWDVLSFIMKKRSILPKCHLQQFKDAIV 150
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: A0A022Q7H1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a003817mg PE=4 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 7.597e-31 Identity = 106/355 (29.86%), Postives = 168/355 (47.32%), Query Frame = 2 Query: 1289 EDEIFNISLKKNLFLSSQHMASQDPVQNADWTEQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGLMGKLIQEQGRSWNHSKLNGNENLAGIQESGHLGREHEHKQEELPAKLKTSDDNP-TTENTETFPINQVEVEGDDILKEVVGPQITDASQKLV------------------NSDGEESSTSADDKYIISSHST----RSKKSE-------------------TRQSFSPTRRLRRK------------KAPWTNDEEEMLRKGVQELAN--EDGTVPWKRILEFGTNVFLMDRTATDLKNKWRSMCK 2185 +DE+ +I +K FLSSQ SQD + D TE N C KC ++G+LL C+S C + +HESCL +D KG F CPFC S +IS Y+E K K ARK L F + + +++ + + G EN H +++ LP++L +S P +N ++ N+V VE + + ++ D ++V S+ T +++ ++ + RS++S+ T + F R+ RK + PWT +EE L+K ++EL + ED ++P+K+ILE G VF RT TDLK+KWR++CK Sbjct: 222 DDEMTDIDTQKKTFLSSQCTHSQDSLATPDSTELNHCEKCKKDGKLLSCSS--CSVMIHESCLGSDQIYDPKGIFYCPFCTSSRAISVYVEVKKKASSARKDLGNF---ICSITRQESNTQSRGLGKGKEN-------------HLEQEDGLPSELPSSHSPPFGGKNVDS--TNKVAVELNVVTRQNSKSPRVDGHNQIVALAVRKSRISCHISETAGRSERHGGGTRSENGGVLRAQEKDLPGRSRRSQISLSADMDEISEESDENSGTSKYFIRVRKPNRKSSYPAIPRVRRKRLPWTKEEENALKKWMRELYDPEEDKSLPYKKILEAGAGVFDPSRTTTDLKDKWRNICK 556 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005590 ID=g.arboreum_cottongen_reftransV1_0005590; Name=g.arboreum_cottongen_reftransV1_0005590; organism=Gossypium arboreum; type=contig; length=2426bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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