g.arboreum_cottongen_reftransV1_0005590, g.arboreum_cottongen_reftransV1_0005590 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005590
Unique Nameg.arboreum_cottongen_reftransV1_0005590
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2426
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0005590:1..2426 .
Chr11:73446004..73450133 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: A0A0D2RDH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110900 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.201e-36
Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = 2
Query: 1229 DLNGEKADMDHPCVEQICEDEDEIFNISLKKNLFLSSQHMASQDPVQNADWTEQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGL 1615
            D+N      + PC++Q+ E+EDE  NI++K++LFLSSQ   S+DPV  A  T+QN CVKCN +G++L+C SS   +AVH SCL   AR+DDKG+FLCPFCACS+S S YLE K++IILARK +VA + L
Sbjct:  151 DVNVATRTFERPCMDQLRENEDERLNIAMKRSLFLSSQSRPSKDPVGKAGPTKQNLCVKCNLSGKVLICGSSDSAVAVHRSCLGSSARYDDKGNFLCPFCACSLSNSKYLEGKDRIILARKNVVALVEL 279          

HSP 2 Score: 115.931 bits (289), Expect = 6.788e-25
Identity = 64/139 (46.04%), Postives = 76/139 (54.68%), Query Frame = 2
Query:   98 GPMFRPYSYGPRAAWLWIIEYVSSFPQLDISIISGLIETAPILPEDLEENTSERVALRCLEELFGPQNSHGSVAPVSRAVLNPSASCDDVLDHILYHILQKVPLSDLKNAGPELLRWDGHSFIEHKRATLPKCALEQLK 514
            GP+F   S GP   WLW IEY+SSFP LD+SI+      AP+ P++  ENT+ERVALRCLEE   P+N                                 V  S LK AGPEL+RWD   FI HK+A LPKC+LEQLK
Sbjct:    5 GPIFSFRSDGPCLTWLWSIEYLSSFPHLDLSIV-----PAPVSPDESGENTTERVALRCLEEPIVPENG--------------------------------VSFSSLKKAGPELVRWDVQPFIMHKKALLPKCSLEQLK 106          
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: K7KHF0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.694e-32
Identity = 109/327 (33.33%), Postives = 159/327 (48.62%), Query Frame = 2
Query: 1385 EQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGLMGKLIQ---------EQGRSWN---------HSKLNGNENLAGIQ------------ESGHLGREHEHKQEE---------LPAKLKTSDDNPTTENTETFPINQVEVEGDDILKEVVGPQITDASQKLVNSDG------------EESSTSADDKYIISSHSTRSKKSETR------QSFSPTRRLRRKKAPWTNDEEEMLRKGVQELANEDGTVPWKRILEFGTNVF---LMDRTATDLKNKWRSMCK 2185
            EQN C+KC++ G+LL C ++ C L VH++CL   A+ D KG+F CPFCA S +IS YLE+K    LARK+L  F+   GKLIQ          Q   ++         H K N ++ LAG +            E+  L  E   +Q E         +P   +  +    T++ +    ++   E  +I  E    ++     K  N DG            E+ S    +K+    +S R +K ET+      Q F    +LRRKK PWT +EEE +++GVQ+   E     WK+IL+FG++VF      RT  DLK+KWR+MCK
Sbjct:  392 EQNLCMKCHEGGQLLACKTTTCPLMVHKNCLGASAQLDAKGNFFCPFCAYSHAISEYLESKENASLARKELAIFIS-KGKLIQAAEFVHEFHRQEHCFSRKNSKCEHIHVKNNEDDQLAGCEDNREDHVGEHANEANDLQFERSKQQAEVLREEEIGKMPTVGRVEESEVPTDHVDGHVGDKFASEKTNIAPESNAEEVPQEMTKQHNIDGTIEPVCAQDTGKEKISEDESEKHSNPLYSLRFRKHETQCKPQAGQVFL-GNQLRRKKIPWTAEEEEKIKEGVQKFGKE-----WKKILQFGSHVFDKVGKRRTPHDLKDKWRNMCK 711          

HSP 2 Score: 101.679 bits (252), Expect = 7.048e-19
Identity = 59/134 (44.03%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  137 AWLWIIEYVSSFPQLDISIISGLIETAPILPEDLEENTSERVALRCLEEL----FGPQNSHGSVAPVSRAVLNPSASCDDVLDHILYHILQKVPLSDLKNAGPELLRWDGHSFIEHKRATLPKCALEQLKDVIL 526
            AWLW+IE + +  ++    + G I+ AP+      +NT E VALRCLE+L      P+    S    SR   N   SC DVL  IL     K+PLS+LK AG ELL+WD   FI+HKRA   KC LEQL++ I 
Sbjct:   11 AWLWVIEALLTSKEITTPTLQGFIDAAPVGHHRFSKNTKELVALRCLEKLSTLVVDPE---ASSNLDSRFGFNVLGSCQDVLKEIL----GKIPLSNLKVAGAELLKWDICPFIKHKRAVTFKCHLEQLRESIF 137          
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: A0A0B2RPD2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_013688 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.694e-32
Identity = 109/327 (33.33%), Postives = 159/327 (48.62%), Query Frame = 2
Query: 1385 EQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGLMGKLIQ---------EQGRSWN---------HSKLNGNENLAGIQ------------ESGHLGREHEHKQEE---------LPAKLKTSDDNPTTENTETFPINQVEVEGDDILKEVVGPQITDASQKLVNSDG------------EESSTSADDKYIISSHSTRSKKSETR------QSFSPTRRLRRKKAPWTNDEEEMLRKGVQELANEDGTVPWKRILEFGTNVF---LMDRTATDLKNKWRSMCK 2185
            EQN C+KC++ G+LL C ++ C L VH++CL   A+ D KG+F CPFCA S +IS YLE+K    LARK+L  F+   GKLIQ          Q   ++         H K N ++ LAG +            E+  L  E   +Q E         +P   +  +    T++ +    ++   E  +I  E    ++     K  N DG            E+ S    +K+    +S R +K ET+      Q F    +LRRKK PWT +EEE +++GVQ+   E     WK+IL+FG++VF      RT  DLK+KWR+MCK
Sbjct:  392 EQNLCMKCHEGGQLLACKTTTCPLMVHKNCLGASAQLDAKGNFFCPFCAYSHAISEYLESKENASLARKELAIFIS-KGKLIQAAEFVHEFHRQEHCFSRKNSKCEHIHVKNNEDDQLAGCEDNREDHVGEHANEANDLQFERSKQQAEVLREEEIGKMPTVGRVEESEVPTDHVDGHVGDKFASEKTNIAPESNAEEVPQEMTKQHNIDGTIEPVCAQDTGKEKISEDESEKHSNPLYSLRFRKHETQCKPQAGQVFL-GNQLRRKKIPWTAEEEEKIKEGVQKFGKE-----WKKILQFGSHVFDKVGKRRTPHDLKDKWRNMCK 711          

HSP 2 Score: 101.679 bits (252), Expect = 7.048e-19
Identity = 59/134 (44.03%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  137 AWLWIIEYVSSFPQLDISIISGLIETAPILPEDLEENTSERVALRCLEEL----FGPQNSHGSVAPVSRAVLNPSASCDDVLDHILYHILQKVPLSDLKNAGPELLRWDGHSFIEHKRATLPKCALEQLKDVIL 526
            AWLW+IE + +  ++    + G I+ AP+      +NT E VALRCLE+L      P+    S    SR   N   SC DVL  IL     K+PLS+LK AG ELL+WD   FI+HKRA   KC LEQL++ I 
Sbjct:   11 AWLWVIEALLTSKEITTPTLQGFIDAAPVGHHRFSKNTKELVALRCLEKLSTLVVDPE---ASSNLDSRFGFNVLGSCQDVLKEIL----GKIPLSNLKVAGAELLKWDICPFIKHKRAVTFKCHLEQLRESIF 137          
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: M1BJ48_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018039 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.269e-31
Identity = 107/332 (32.23%), Postives = 154/332 (46.39%), Query Frame = 2
Query: 1235 NGEKADMDHPCVEQICEDE---------DEIFNISLKKNLFLSSQHMASQDPVQNADWTEQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGLMGKLIQEQG--RSWNHSKLNGNENLAGIQESGHLGRE--HEHKQEELPAKLKTSDDNPTTENTETFPINQVEVEGDDILKEVVGPQITDASQKLVNSDGEESSTSADDKYIISSHSTRSKKSETRQSFSPTRRLRRKKAPWTNDEEEMLRKGVQELANEDGTVPWKRILEFGTNVFLMDRTATDLKNKWRSMCKDS 2191
            NGE ++ D   +EQ  E E         +E  +++ +KN FL+ Q+   +D +     TE N CVKC++ G LLVC+S  C L VHESCL     F  KG F CPFC  S  IS  LE K K  LA+  L AF+GL      ++   RS    K    E+          G+   +E++ +    K   +   P T N+    + Q+             PQ     + +   + EE       +Y + S      +++         +LRRK  PWT  EE+ L++G   L   D    WKRIL FG +VFL  RT+ DLK+KWR++ + S
Sbjct:  391 NGEPSNADKENIEQSRESEFSGDTDKYHNESTDLASQKNDFLNLQYAQGEDSLATVGCTELNICVKCHEGGNLLVCSSETCSLVVHESCLGSVFNFYYKGSFYCPFCTYSRVISENLEGKKKASLAKNDLTAFIGLGAGQQSKKSLPRSQGMKKHQYQEDTIVQLCRNVKGKNSLNENRNKNSLEKDGEARSRPVTTNSMRAKVTQIHP-----------PQPHVPHEHVCQENSEEEQDEIGSRYHVQS------RNQVNNPCPWIPKLRRKNLPWTKMEEKTLKEGF--LRFSDCGDRWKRILAFGGDVFLKARTSGDLKDKWRNISRAS 703          

HSP 2 Score: 106.301 bits (264), Expect = 2.595e-20
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  140 WLWIIEYVSSFPQLDISIISGLIETAPILPEDLEENTSERVALRCLEELFGPQNSHG-SVA--PVSRAVLNPSASCDDVLDHILYHILQKVPLSDLKNAGPELLRWDGHSFIEHKRATLPKCALEQLKDVIL 526
            W+W+IE +++  ++D S++  L++  P + +DL  N  E V+LR LE LF  +NS   SVA  P  +  L+PS  C+DVL  IL     +V  S+LK A P++L+WD  SFI  KR+ LPKC L+Q KD I+
Sbjct:   23 WIWVIEALATSSEIDTSLLINLLKRTPEISDDLGRNAREMVSLRVLESLFVQKNSDANSVASVPGEKVELDPSRDCEDVLRCILL----EVSASNLKTATPDMLKWDVLSFIMKKRSILPKCHLQQFKDAIV 150          
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Match: A0A022Q7H1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a003817mg PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.597e-31
Identity = 106/355 (29.86%), Postives = 168/355 (47.32%), Query Frame = 2
Query: 1289 EDEIFNISLKKNLFLSSQHMASQDPVQNADWTEQNSCVKCNQNGRLLVCTSSGCLLAVHESCLNCPARFDDKGHFLCPFCACSVSISNYLEAKNKIILARKKLVAFMGLMGKLIQEQGRSWNHSKLNGNENLAGIQESGHLGREHEHKQEELPAKLKTSDDNP-TTENTETFPINQVEVEGDDILKEVVGPQITDASQKLV------------------NSDGEESSTSADDKYIISSHST----RSKKSE-------------------TRQSFSPTRRLRRK------------KAPWTNDEEEMLRKGVQELAN--EDGTVPWKRILEFGTNVFLMDRTATDLKNKWRSMCK 2185
            +DE+ +I  +K  FLSSQ   SQD +   D TE N C KC ++G+LL C+S  C + +HESCL     +D KG F CPFC  S +IS Y+E K K   ARK L  F   +  + +++  + +     G EN             H  +++ LP++L +S   P   +N ++   N+V VE + + ++       D   ++V                   S+     T +++  ++ +       RS++S+                   T + F   R+  RK            + PWT +EE  L+K ++EL +  ED ++P+K+ILE G  VF   RT TDLK+KWR++CK
Sbjct:  222 DDEMTDIDTQKKTFLSSQCTHSQDSLATPDSTELNHCEKCKKDGKLLSCSS--CSVMIHESCLGSDQIYDPKGIFYCPFCTSSRAISVYVEVKKKASSARKDLGNF---ICSITRQESNTQSRGLGKGKEN-------------HLEQEDGLPSELPSSHSPPFGGKNVDS--TNKVAVELNVVTRQNSKSPRVDGHNQIVALAVRKSRISCHISETAGRSERHGGGTRSENGGVLRAQEKDLPGRSRRSQISLSADMDEISEESDENSGTSKYFIRVRKPNRKSSYPAIPRVRRKRLPWTKEEENALKKWMRELYDPEEDKSLPYKKILEAGAGVFDPSRTTTDLKDKWRNICK 556          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2RDH5_GOSRA1.201e-3655.81Uncharacterized protein OS=Gossypium raimondii GN=... [more]
K7KHF0_SOYBN2.694e-3233.33Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2RPD2_GLYSO2.694e-3233.33Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
M1BJ48_SOLTU4.269e-3132.23Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A022Q7H1_ERYGU7.597e-3129.86Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005590 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 298..318
NoneNo IPR availablePANTHERPTHR21717:SF18HOMEODOMAIN-LIKE PROTEIN WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAINcoord: 421..694
NoneNo IPR availablePANTHERPTHR21717TELOMERIC REPEAT BINDING PROTEINcoord: 421..694
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 431..476
e-value: 3.8E-4
score: 29.8
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 637..694
e-value: 7.0E-12
score: 44.6
IPR009057Homeodomain-likeSUPERFAMILY46689Homeodomain-likecoord: 635..694
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 414..480
e-value: 3.9E-8
score: 32.2
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 432..475
IPR017877Myb-like domainPROSITEPS50090MYB_LIKEcoord: 633..693
score: 7.956
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 419..480

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005590 ID=g.arboreum_cottongen_reftransV1_0005590; Name=g.arboreum_cottongen_reftransV1_0005590; organism=Gossypium arboreum; type=contig; length=2426bp
AGAAAGAACACATTGTTTCCCGGCACTCAAGTGATACTCTTCTCTTTGAA
ATATTTCAATGGATTCTTAAGGTAAATCAAGTGCTTGCTCTTGACTTGGT
CCGATGTTTCGCCCTTACTCTTATGGTCCAAGAGCTGCATGGCTTTGGAT
CATTGAGTACGTATCAAGCTTTCCCCAGCTAGATATTTCCATTATATCCG
GTCTGATTGAAACAGCTCCAATTTTACCAGAGGACCTAGAAGAAAATACA
AGTGAAAGGGTTGCTTTAAGATGCTTGGAGGAGTTATTTGGTCCTCAAAA
CAGTCATGGAAGTGTTGCTCCCGTTTCAAGAGCTGTTTTGAATCCTTCTG
CAAGCTGCGATGATGTTCTTGATCACATACTGTATCACATACTGCAAAAG
GTCCCATTATCTGATCTGAAAAATGCTGGACCAGAGCTTTTGAGATGGGA
TGGTCACTCCTTTATTGAGCATAAAAGAGCCACCCTACCTAAATGTGCAT
TAGAACAGTTGAAAGATGTTATTTTGCTGGACGACCCTTATCTTGATGGC
AATGAAAATGGGCCTCCATCACGGTCTGATGACAGCAATGATGAAAATGG
TAATCAAGAGGGTAACTTGATTCCACAAATTAAAAAAAATGAAGAGTTGC
TTGGAAGAAATCCAATTCCGTCGAAGAGGTCTAGAGATGAGTTGGTTGCT
GGAAATTCGAAGGGAATAGTCAGTGTTAACCATGGTAGTATGCAATGTGA
TCTTCATTTGAATGCAAAGAAGTCAAAGCTAGTTGCGAAGCCCGCTTGTA
CTATTCAGGCTGTTGCGGAGCTTCCAATTCACCTGCATGATGATGATGAG
CGGTTGGAAGATGAATCTCAAAGGATTATGAAGGTTACTGAAATAGGGAC
TAATAACTTGGGAAAGGTTTCTCAGATAGGTGAGGGTAATCGAGATTTAT
GTGTTGCCTCAAGGACCCCTGGGCTGATTGATGCTGTTGGTCGTGTGGAA
TTGCTGGACAATCAGATGGAAAATGTTCAAAATGATAATACTGACATGAT
GGTCGAGCAAAAGCATGGAGATATAATTTGCCCAAATGTTGTGATTAACG
AATCCAGTCCTGTTGAAAATGGTGCACCGGTAAAGGAATCTAGTGGTGAT
GTGGGTGGAAATATTGATCACGATTTTACATCAAGTTCCCAAAATTCTAT
CTCCGCTGATGGGTTACAAGAAAATGTTGATCTGAATGGGGAAAAAGCTG
ACATGGATCATCCTTGTGTGGAACAGATATGCGAAGATGAAGATGAGATC
TTTAACATTTCCTTAAAGAAGAACCTTTTCTTGAGTTCACAGCACATGGC
TAGTCAAGATCCTGTTCAAAATGCTGACTGGACAGAACAAAATTCTTGTG
TCAAGTGTAATCAAAATGGTCGGTTGTTGGTCTGTACTTCTAGTGGTTGC
CTGCTTGCGGTTCATGAGAGCTGCTTGAATTGCCCTGCAAGATTTGATGA
TAAGGGCCACTTTCTTTGCCCTTTCTGTGCATGCTCTGTTTCCATCTCAA
ATTATCTAGAAGCTAAGAACAAGATCATCTTGGCAAGGAAGAAACTAGTT
GCATTTATGGGGCTTATGGGAAAACTTATTCAGGAGCAGGGGAGGTCTTG
GAATCATTCAAAATTAAATGGCAATGAAAACCTTGCTGGAATTCAGGAGA
GTGGGCATCTAGGGAGAGAGCATGAACACAAACAGGAAGAACTACCAGCC
AAGCTTAAAACCTCTGATGATAATCCAACCACTGAAAACACTGAAACTTT
CCCCATAAATCAGGTAGAAGTTGAAGGAGATGACATACTAAAGGAAGTTG
TAGGGCCTCAGATTACTGATGCAAGTCAGAAACTTGTCAATAGTGATGGA
GAGGAATCATCTACCAGTGCAGATGATAAGTATATAATATCTAGTCATTC
TACAAGGTCCAAAAAAAGTGAAACAAGGCAATCATTCTCGCCAACTCGAC
GATTGAGAAGAAAGAAAGCTCCATGGACGAATGACGAAGAAGAGATGCTC
AGGAAGGGAGTGCAGGAGCTTGCAAATGAGGATGGGACAGTTCCATGGAA
GAGAATTTTGGAGTTTGGTACCAATGTGTTTCTTATGGATAGGACTGCAA
CAGACCTCAAGAATAAGTGGAGAAGTATGTGCAAGGATAGCCCGGGATGC
AAATGATATGATGTCACAGCCTTGTGATTTTGCATATAAGATGATGTGAT
TTATATATCTCGGTTAAGTCATCTCTTTTTGTTTTAAAGGAAGTAGGTGA
GTTCAATAGCTCTGTTATGATTTACTGTATTCAGGGCTACAGCATAAGTA
ATAGGAAGTTGGAAATGGGTTTTCCCCCTGTTTTTGTCTTTTGTGAAATG
AAATACTTGTTTGGCTTTGATGGAAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR009057Homeobox-like_sf
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR017877Myb-like_dom
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0003677DNA binding