g.arboreum_cottongen_reftransV1_0017305, g.arboreum_cottongen_reftransV1_0017305 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017305
Unique Nameg.arboreum_cottongen_reftransV1_0017305
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length321
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0017305:1..321 .
Chr5:58153386..58153955 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: B9RSR5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678080 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-17
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = -2
Query:    3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK------YDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+  +K+      GEK EEN   + A +S+LT PLL KQDEK ++V +D+D+  +    K      +DAATNG   +SEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  319 SSHMAAVVKSKAKSKIPMTTGEKQEENK--ATAGDSELTIPLLVKQDEKLDTVILDMDRVSRLSSNKQTSSQRFDAATNGLVQSSEDIEDGEVIGIITLEDVFEELLQEEIV 428          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: B9HY74_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s03120g PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.868e-17
Identity = 68/112 (60.71%), Postives = 81/112 (72.32%), Query Frame = -2
Query:    3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDK----SFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+  G SK    T+DG K  E N+V+   ESQLTTPLL   +EK +SV VD+D+    S +P L + DA+  G ++ SEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  318 SSHMAAVVKAKGKSKALPPTIDG-KEHEGNKVT-GKESQLTTPLLSMPNEKLDSVVVDMDRVSRPSRQPSLQRNDASIKGMTLLSEDIEDGEVIGIITLEDVFEELLQEEIV 427          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A068TUG2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00025983001 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.804e-16
Identity = 66/112 (58.93%), Postives = 79/112 (70.54%), Query Frame = -2
Query:    3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP----LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+  G S++   TVD  KSE N    ++  S+LTTPLL KQDEK ESV VDI+K  +P     L   +A T+G   T +D+E+GEVIGIITLEDVFEELLQEEIV
Sbjct:  319 SSHMAAVVKAKGKSRHVPPTVDEGKSEGN--AVSSGNSRLTTPLLSKQDEKSESVIVDIEKPSRPASNHTLTYSEAVTHGLPSTVDDVEEGEVIGIITLEDVFEELLQEEIV 428          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A067KVC2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02095 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.813e-16
Identity = 68/113 (60.18%), Postives = 76/113 (67.26%), Query Frame = -2
Query:    3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFK-------PPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+   K    T  GEK EEN   + + +SQLTTPLL KQDEK +S+ VDID+  +       P  C   A TNG    SEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  319 SSHMAAVVKSKGKTKIPTSTGEKHEENK--ATSGDSQLTTPLLVKQDEKSDSLIVDIDRVSRLSKQTSSPRNC---AVTNGFPQPSEDIEDGEVIGIITLEDVFEELLQEEIV 426          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: M5XF43_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005189mg PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.877e-16
Identity = 70/114 (61.40%), Postives = 79/114 (69.30%), Query Frame = -2
Query:    3 SSHMAAVVRGNSKN-ASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+   K+ A   +D EK  E+NRVS+  +SQLTTPLL KQD KP+SV VDI +  + P           D ATNG    SEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  319 SSHMAAVVKSKGKSKALPPIDAEK--EDNRVSDT-DSQLTTPLLSKQDGKPDSVIVDIPRVPRSPHSNRETFASHGDGATNGFPQLSEDIEDGEVIGIITLEDVFEELLQEEIV 429          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Match: Y4423_ARATH (DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-13
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = -2
Query:    3 SSHMAAV--VRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAV  V+G SK   +T+  E S E+N  SN   S+LT PLL K++   +SV V IDK+        +A   G S TSE+IEDG+VIGIITLEDVFEELLQEEIV
Sbjct:  320 SSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSN--NSELTAPLLLKREGNHDSVIVRIDKANGQSFIS-EAGRQGFSHTSEEIEDGDVIGIITLEDVFEELLQEEIV 424          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9RSR5_RICCO6.094e-1758.04Putative uncharacterized protein OS=Ricinus commun... [more]
B9HY74_POPTR9.868e-1760.71Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A068TUG2_COFCA1.804e-1658.93Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A067KVC2_JATCU1.813e-1660.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5XF43_PRUPE3.877e-1661.40Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4423_ARATH3.996e-1356.48DUF21 domain-containing protein At4g14230 OS=Arabi... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12064:SF32SUBFAMILY NOT NAMEDcoord: 1..10
NoneNo IPR availablePANTHERPTHR12064ANCIENT CONSERVED DOMAIN PROTEIN-RELATEDcoord: 1..10
NoneNo IPR availablePANTHERPTHR12064ANCIENT CONSERVED DOMAIN PROTEIN-RELATEDcoord: 75..103
NoneNo IPR availablePANTHERPTHR12064:SF32SUBFAMILY NOT NAMEDcoord: 75..103

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017305 ID=g.arboreum_cottongen_reftransV1_0017305; Name=g.arboreum_cottongen_reftransV1_0017305; organism=Gossypium arboreum; type=contig; length=321bp
TCCACTATCTCCTCCTGTAGAAGTTCTTCAAAAACATCTTCTAGGGTGAT
AATACCAATAACTTCACCATCTTCAATATCCTCTGATGTCATAGACGGTC
CATTTGTTGCAGCATCATACTTGCATAAAGGAGGCTTGAAAGACTTGTCA
ATGTCAACAGTTACGGACTCTGGCTTCTCGTCTTGTTTGGGAAGCAAAGG
AGTAGTCAGTTGGGATTCTGCTGCATTGGAGACTCTATTGTTTTCTTCAC
TTTTTTCTCCATCAACTGTAGCAGAAGCATTCTTAGAGTTGCCTCTAACA
ACAGCTGCCATATGACTGCTG
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