g.arboreum_cottongen_reftransV1_0017305, g.arboreum_cottongen_reftransV1_0017305 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2RNQ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G170300 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.411e-22 Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = -2 Query: 3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ G +KN TVDG KSEEN +VS+A ++QLTTPLL K DEKPES+ VD+ K +P + DA T G S+TSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 321 SSHMAAVVKAKGKNKNLPLTVDGLKSEEN-KVSSA-DTQLTTPLLSKLDEKPESIVVDVGKLSRPTNTSRLDAVTYGLSVTSEDIEDGEVIGIITLEDVFEELLQEEIV 427
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: F6HDL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02610 PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 7.637e-21 Identity = 72/113 (63.72%), Postives = 83/113 (73.45%), Query Frame = -2 Query: 3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKY-----DAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ G +KNA +DG+ +EEN A+SQLTTPLL KQDEK ES+ VDI+K+ +P + DAATNG SEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 394 SSHMAAVVKPKGRNKNAPQVMDGKITEENK--ITGADSQLTTPLLSKQDEKLESIVVDIEKASRPTIINRQSQHSDAATNGLPRLSEDIEDGEVIGIITLEDVFEELLQEEIV 504
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2T997_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G170300 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.274e-20 Identity = 71/105 (67.62%), Postives = 82/105 (78.10%), Query Frame = -2 Query: 15 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQ 320 SSHMAAVV+ G +KN TVDG KSEEN +VS+A ++QLTTPLL K DEKPES+ VD+ K +P + DA T G S+TSEDIEDGEVIGIITLEDVFEELLQ Sbjct: 321 SSHMAAVVKAKGKNKNLPLTVDGLKSEEN-KVSSA-DTQLTTPLLSKLDEKPESIVVDVGKLSRPTNTSRLDAVTYGLSVTSEDIEDGEVIGIITLEDVFEELLQ 423
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: W9RL56_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010034 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.214e-19 Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKN-ASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKY-------DAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ K+ A ++GEK+E+ N+ + + ESQLTTPLL KQDEK +SV VDID++ KP K DA+ NG SEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 312 SSHMAAVVKTKGKSKALPAIEGEKAEDENK-ATSGESQLTTPLLTKQDEKADSVVVDIDRASKPSSLKREPSFPRNDASANGLPRLSEDIEDGEVIGIITLEDVFEELLQEEIV 424
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: I1MR96_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.804e-18 Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = -2 Query: 3 SSHMAAVV--RGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV RG K +D EK+EEN + +SQLTTPLL KQD K SV VDI K KP L + D TNGPS SE+IEDGEVIGIITLEDVFEELLQEEIV Sbjct: 320 SSHMAAVVKARGKGKETPQIIDEEKNEENESI--GGDSQLTTPLLQKQDAKSGSVVVDIAKPSKPSSINKLSGLQRSDGTTNGPS--SENIEDGEVIGIITLEDVFEELLQEEIV 430
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0B2P6Y2_GLYSO (DUF21 domain-containing protein OS=Glycine soja GN=glysoja_004464 PE=4 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.804e-18 Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = -2 Query: 3 SSHMAAVV--RGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV RG K +D EK+EEN + +SQLTTPLL KQD K SV VDI K KP L + D TNGPS SE+IEDGEVIGIITLEDVFEELLQEEIV Sbjct: 320 SSHMAAVVKARGKGKETPQIIDEEKNEENESI--GGDSQLTTPLLQKQDAKSGSVVVDIAKPSKPSSINKLSGLQRSDGTTNGPS--SENIEDGEVIGIITLEDVFEELLQEEIV 430
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: I1KN82_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.608e-18 Identity = 71/115 (61.74%), Postives = 78/115 (67.83%), Query Frame = -2 Query: 3 SSHMAAVV--RGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV RG K +D EK+EEN + +SQLTTPLL KQD K SV VDI K KP L + D+ TNGPS SE+IEDGEVIGIITLEDVFEELLQEEIV Sbjct: 320 SSHMAAVVKARGKGKETPQIIDEEKNEENKSI--GGDSQLTTPLLQKQDAKSGSVVVDIVKPSKPSSINKLSVLQRSDSTTNGPS--SENIEDGEVIGIITLEDVFEELLQEEIV 430
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0B2P5X7_GLYSO (DUF21 domain-containing protein OS=Glycine soja GN=glysoja_009908 PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.040e-17 Identity = 71/115 (61.74%), Postives = 78/115 (67.83%), Query Frame = -2 Query: 3 SSHMAAVV--RGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV RG K +D EK+EEN + +SQLTTPLL KQD K SV VDI K KP L + D+ TNGPS SE+IEDGEVIGIITLEDVFEELLQEEIV Sbjct: 320 SSHMAAVVKARGKGKETPQIIDEEKNEENKSI--GGDSQLTTPLLQKQDAKSGSVVVDIVKPSKPSSINKLSVLQRSDSTTNGPS--SENIEDGEVIGIITLEDVFEELLQEEIV 430
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: B9HMC7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s20640g PE=4 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.093e-17 Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = -2 Query: 3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDK----SFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ G SK+ +DGE+ +E ++V+ +SQLTTPLL KQDEK +SV VDID+ S P + D +TNG SEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 318 SSHMAAVVKAKGKSKDLPPAIDGEE-QEGSKVT-GRDSQLTTPLLSKQDEKSDSVVVDIDRVSRSSRHPSSQRNDTSTNGLPQLSEDIEDGEVIGIITLEDVFEELLQEEIV 427
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0A0KFQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G238140 PE=4 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.829e-17 Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASA--TVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFK-------PPLCKYDAAT-NGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ KN + T+DGE+ E+N ++ ESQLT PLL K DE +SV +DID++ K P + DA++ NGPS +SEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 319 SSHMAAVVKVKGKNKALPPTLDGEEFEDNK--ASGTESQLTAPLLRKHDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIEDGEVIGIITLEDVFEELLQEEIV 432
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Match: Y4423_ARATH (DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-13 Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = -2 Query: 3 SSHMAAV--VRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAV V+G SK +T+ E S E+N SN S+LT PLL K++ +SV V IDK+ +A G S TSE+IEDG+VIGIITLEDVFEELLQEEIV Sbjct: 320 SSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSN--NSELTAPLLLKREGNHDSVIVRIDKANGQSFIS-EAGRQGFSHTSEEIEDGDVIGIITLEDVFEELLQEEIV 424 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0017305 ID=g.arboreum_cottongen_reftransV1_0017305; Name=g.arboreum_cottongen_reftransV1_0017305; organism=Gossypium arboreum; type=contig; length=321bpback to top |