g.arboreum_cottongen_reftransV1_0017305, g.arboreum_cottongen_reftransV1_0017305 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017305
Unique Nameg.arboreum_cottongen_reftransV1_0017305
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length321
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0017305:1..321 .
Chr5:58153386..58153955 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2RNQ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G170300 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.411e-22
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = -2
Query:    3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+  G +KN   TVDG KSEEN +VS+A ++QLTTPLL K DEKPES+ VD+ K  +P    + DA T G S+TSEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  321 SSHMAAVVKAKGKNKNLPLTVDGLKSEEN-KVSSA-DTQLTTPLLSKLDEKPESIVVDVGKLSRPTNTSRLDAVTYGLSVTSEDIEDGEVIGIITLEDVFEELLQEEIV 427          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: F6HDL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02610 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.637e-21
Identity = 72/113 (63.72%), Postives = 83/113 (73.45%), Query Frame = -2
Query:    3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKY-----DAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+  G +KNA   +DG+ +EEN      A+SQLTTPLL KQDEK ES+ VDI+K+ +P +        DAATNG    SEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  394 SSHMAAVVKPKGRNKNAPQVMDGKITEENK--ITGADSQLTTPLLSKQDEKLESIVVDIEKASRPTIINRQSQHSDAATNGLPRLSEDIEDGEVIGIITLEDVFEELLQEEIV 504          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2T997_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G170300 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.274e-20
Identity = 71/105 (67.62%), Postives = 82/105 (78.10%), Query Frame = -2
Query:   15 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQ 320
            SSHMAAVV+  G +KN   TVDG KSEEN +VS+A ++QLTTPLL K DEKPES+ VD+ K  +P    + DA T G S+TSEDIEDGEVIGIITLEDVFEELLQ
Sbjct:  321 SSHMAAVVKAKGKNKNLPLTVDGLKSEEN-KVSSA-DTQLTTPLLSKLDEKPESIVVDVGKLSRPTNTSRLDAVTYGLSVTSEDIEDGEVIGIITLEDVFEELLQ 423          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: W9RL56_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010034 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.214e-19
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = -2
Query:    3 SSHMAAVVRGNSKN-ASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKY-------DAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+   K+ A   ++GEK+E+ N+ + + ESQLTTPLL KQDEK +SV VDID++ KP   K        DA+ NG    SEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  312 SSHMAAVVKTKGKSKALPAIEGEKAEDENK-ATSGESQLTTPLLTKQDEKADSVVVDIDRASKPSSLKREPSFPRNDASANGLPRLSEDIEDGEVIGIITLEDVFEELLQEEIV 424          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: I1MR96_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.804e-18
Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = -2
Query:    3 SSHMAAVV--RGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV  RG  K     +D EK+EEN  +    +SQLTTPLL KQD K  SV VDI K  KP        L + D  TNGPS  SE+IEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  320 SSHMAAVVKARGKGKETPQIIDEEKNEENESI--GGDSQLTTPLLQKQDAKSGSVVVDIAKPSKPSSINKLSGLQRSDGTTNGPS--SENIEDGEVIGIITLEDVFEELLQEEIV 430          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0B2P6Y2_GLYSO (DUF21 domain-containing protein OS=Glycine soja GN=glysoja_004464 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.804e-18
Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = -2
Query:    3 SSHMAAVV--RGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV  RG  K     +D EK+EEN  +    +SQLTTPLL KQD K  SV VDI K  KP        L + D  TNGPS  SE+IEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  320 SSHMAAVVKARGKGKETPQIIDEEKNEENESI--GGDSQLTTPLLQKQDAKSGSVVVDIAKPSKPSSINKLSGLQRSDGTTNGPS--SENIEDGEVIGIITLEDVFEELLQEEIV 430          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: I1KN82_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.608e-18
Identity = 71/115 (61.74%), Postives = 78/115 (67.83%), Query Frame = -2
Query:    3 SSHMAAVV--RGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV  RG  K     +D EK+EEN  +    +SQLTTPLL KQD K  SV VDI K  KP        L + D+ TNGPS  SE+IEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  320 SSHMAAVVKARGKGKETPQIIDEEKNEENKSI--GGDSQLTTPLLQKQDAKSGSVVVDIVKPSKPSSINKLSVLQRSDSTTNGPS--SENIEDGEVIGIITLEDVFEELLQEEIV 430          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0B2P5X7_GLYSO (DUF21 domain-containing protein OS=Glycine soja GN=glysoja_009908 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.040e-17
Identity = 71/115 (61.74%), Postives = 78/115 (67.83%), Query Frame = -2
Query:    3 SSHMAAVV--RGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-------LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV  RG  K     +D EK+EEN  +    +SQLTTPLL KQD K  SV VDI K  KP        L + D+ TNGPS  SE+IEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  320 SSHMAAVVKARGKGKETPQIIDEEKNEENKSI--GGDSQLTTPLLQKQDAKSGSVVVDIVKPSKPSSINKLSVLQRSDSTTNGPS--SENIEDGEVIGIITLEDVFEELLQEEIV 430          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: B9HMC7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s20640g PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.093e-17
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = -2
Query:    3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDK----SFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+  G SK+    +DGE+ +E ++V+   +SQLTTPLL KQDEK +SV VDID+    S  P   + D +TNG    SEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  318 SSHMAAVVKAKGKSKDLPPAIDGEE-QEGSKVT-GRDSQLTTPLLSKQDEKSDSVVVDIDRVSRSSRHPSSQRNDTSTNGLPQLSEDIEDGEVIGIITLEDVFEELLQEEIV 427          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0A0KFQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G238140 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.829e-17
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = -2
Query:    3 SSHMAAVVRGNSKNASA--TVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFK-------PPLCKYDAAT-NGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAVV+   KN +   T+DGE+ E+N   ++  ESQLT PLL K DE  +SV +DID++ K       P   + DA++ NGPS +SEDIEDGEVIGIITLEDVFEELLQEEIV
Sbjct:  319 SSHMAAVVKVKGKNKALPPTLDGEEFEDNK--ASGTESQLTAPLLRKHDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIEDGEVIGIITLEDVFEELLQEEIV 432          
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Match: Y4423_ARATH (DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-13
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = -2
Query:    3 SSHMAAV--VRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320
            SSHMAAV  V+G SK   +T+  E S E+N  SN   S+LT PLL K++   +SV V IDK+        +A   G S TSE+IEDG+VIGIITLEDVFEELLQEEIV
Sbjct:  320 SSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSN--NSELTAPLLLKREGNHDSVIVRIDKANGQSFIS-EAGRQGFSHTSEEIEDGDVIGIITLEDVFEELLQEEIV 424          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2RNQ6_GOSRA1.411e-2268.81Uncharacterized protein OS=Gossypium raimondii GN=... [more]
F6HDL1_VITVI7.637e-2163.72Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0D2T997_GOSRA3.274e-2067.62Uncharacterized protein OS=Gossypium raimondii GN=... [more]
W9RL56_9ROSA3.214e-1961.40Uncharacterized protein OS=Morus notabilis GN=L484... [more]
I1MR96_SOYBN7.804e-1861.74Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2P6Y2_GLYSO7.804e-1861.74DUF21 domain-containing protein OS=Glycine soja GN... [more]
I1KN82_SOYBN9.608e-1861.74Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2P5X7_GLYSO1.040e-1761.74DUF21 domain-containing protein OS=Glycine soja GN... [more]
B9HMC7_POPTR3.093e-1761.61Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0A0KFQ9_CUCSA4.829e-1758.62Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4423_ARATH3.996e-1356.48DUF21 domain-containing protein At4g14230 OS=Arabi... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12064:SF32SUBFAMILY NOT NAMEDcoord: 1..10
NoneNo IPR availablePANTHERPTHR12064ANCIENT CONSERVED DOMAIN PROTEIN-RELATEDcoord: 1..10
NoneNo IPR availablePANTHERPTHR12064ANCIENT CONSERVED DOMAIN PROTEIN-RELATEDcoord: 75..103
NoneNo IPR availablePANTHERPTHR12064:SF32SUBFAMILY NOT NAMEDcoord: 75..103

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017305 ID=g.arboreum_cottongen_reftransV1_0017305; Name=g.arboreum_cottongen_reftransV1_0017305; organism=Gossypium arboreum; type=contig; length=321bp
TCCACTATCTCCTCCTGTAGAAGTTCTTCAAAAACATCTTCTAGGGTGAT
AATACCAATAACTTCACCATCTTCAATATCCTCTGATGTCATAGACGGTC
CATTTGTTGCAGCATCATACTTGCATAAAGGAGGCTTGAAAGACTTGTCA
ATGTCAACAGTTACGGACTCTGGCTTCTCGTCTTGTTTGGGAAGCAAAGG
AGTAGTCAGTTGGGATTCTGCTGCATTGGAGACTCTATTGTTTTCTTCAC
TTTTTTCTCCATCAACTGTAGCAGAAGCATTCTTAGAGTTGCCTCTAACA
ACAGCTGCCATATGACTGCTG
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