g.arboreum_cottongen_reftransV1_0012136, g.arboreum_cottongen_reftransV1_0012136 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0012136
Unique Nameg.arboreum_cottongen_reftransV1_0012136
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length578
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr8chromosomeg.arboreum_cottongen_reftransV1_0012136:16..578 .
Chr8:94953844..94954982 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FF75_THECC (Pre-mRNA-processing protein 40A isoform 6 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 4.808e-67
Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578
            MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ  ASQG PS +GVA QAPVA AVS+AE P  AIPVSSNT Q SSPVSVTP   VANPSPT V+G T  PV+QSAA +A+ VQ P V+VTP+PAV S GST P  SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA
Sbjct:  255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FMH1_THECC (Pre-mRNA-processing protein 40A isoform 4 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.780e-67
Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578
            MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ  ASQG PS +GVA QAPVA AVS+AE P  AIPVSSNT Q SSPVSVTP   VANPSPT V+G T  PV+QSAA +A+ VQ P V+VTP+PAV S GST P  SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA
Sbjct:  255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FEF2_THECC (Pre-mRNA-processing protein 40A isoform 5 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.626e-67
Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578
            MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ  ASQG PS +GVA QAPVA AVS+AE P  AIPVSSNT Q SSPVSVTP   VANPSPT V+G T  PV+QSAA +A+ VQ P V+VTP+PAV S GST P  SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA
Sbjct:  255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FG70_THECC (Pre-mRNA-processing protein 40A isoform 1 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.126e-66
Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578
            MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ  ASQG PS +GVA QAPVA AVS+AE P  AIPVSSNT Q SSPVSVTP   VANPSPT V+G T  PV+QSAA +A+ VQ P V+VTP+PAV S GST P  SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA
Sbjct:  255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FFL7_THECC (Pre-mRNA-processing protein 40A isoform 3 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.331e-66
Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578
            MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ  ASQG PS +GVA QAPVA AVS+AE P  AIPVSSNT Q SSPVSVTP   VANPSPT V+G T  PV+QSAA +A+ VQ P V+VTP+PAV S GST P  SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA
Sbjct:  255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: W9SF57_9ROSA (Pre-mRNA-processing factor 40-A-like protein OS=Morus notabilis GN=L484_000729 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.680e-40
Identity = 104/200 (52.00%), Postives = 130/200 (65.00%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSN-----TLQDSSPVSVTPVANXXXXXXXXXXXXXX--AQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVG-ANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578
            MTPIERADASTVWKE+++P+GRKYY+NKVTK+SKWTIPEELKLAREQAQ  +SQG  S +G+A   PV  AV ++E P+   PV+S      T   SSPV+VTPVA+   +S+T   +     +QSA  SA  VQ P +           GST  +P++G ANT   R+ +   +QD     DGAS  DIEEAKKGMA A
Sbjct:  216 MTPIERADASTVWKEYSSPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKESSQGMQSETGLASHGPV--AVGSSEMPSAGTPVASGAPLVATGVASSPVAVTPVASLPNSSMTISGSSATPGSQSAVASAVAVQ-PPMVTVTPLNPAISGSTGVSPALGNANTTPVRTYDNRVSQDIASSVDGASILDIEEAKKGMAVA 412          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0A0L0K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G644700 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.052e-34
Identity = 95/201 (47.26%), Postives = 122/201 (60.70%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSG-SGVAPQAPVATAVSAAETP------TTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGV--QLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578
            MTP+ERADASTVWKEFT P+GRKYY+NKVTKESKWT+PEELKLAREQAQ  A+QGT +  S +APQ  +A  +S AETP      ++  P  S     +SPV VTP  + S +     T      S+A++ T +     V       +V + G T P   V AN +     E+ ++QD  +  DG S +DIEEA+KGMA A
Sbjct:  214 MTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTMPEELKLAREQAQKEATQGTQTDISVMAPQPTLAAGLSHAETPAISSVNSSISPTVSGVA--TSPVPVTPFVSVSNSPSVMVTG-----SSAITGTPIASTTSVSGTVSSQSVAASGGTGPPAVVHANASSVTPFESLASQDVKNTVDGTSTEDIEEARKGMAVA 407          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: M5XQP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000697mg PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.712e-33
Identity = 104/205 (50.73%), Postives = 130/205 (63.41%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETP----------TTAIPVSSNTLQDSSPVSVTPV---ANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578
            MTP+ERADASTVWKE+T+ +G+KYY+NKVT+ESKWTIPEELKLAREQAQ   +QGT S   +   AP   AV++AETP          ++A+P        SSPV+V PV   +NPSP + TG +    AQS+     G+Q PVV+VTP PA  S  + VP   V A T    + E  ++QD     DGA  QDIEEAK+GMA A
Sbjct:  254 MTPMERADASTVWKEYTSSDGKKYYYNKVTRESKWTIPEELKLAREQAQRELAQGTRSEMNLTSHAP--PAVASAETPMGSSSVGPSTSSALPGMV-----SSPVAVIPVSSFSNPSPIAPTGSSVASGAQSSITGGVGIQPPVVTVTPPPASVSGSTGVPPTLVNAITKSVSTFENVTSQDIGSADDGAFTQDIEEAKRGMAVA 451          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: F6H177_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08680 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.826e-29
Identity = 59/78 (75.64%), Postives = 63/78 (80.77%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETP 236
            MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQA+ + SQ T S  G     P   AVS AETP
Sbjct:   85 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAEKSVSQETQSEMGTTSNEPAVVAVSLAETP 162          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: B9IBN8_POPTR (FF domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s01360g PE=4 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.212e-29
Identity = 98/191 (51.31%), Postives = 120/191 (62.83%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQ----DSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKK 563
            MTPIERADASTVWKEFTT EG+KYY+NKVTK+SKW+IPEELK+AREQAQ    QG  S +  A   P A AV+++ET TTA+ VSS+++      SSP+SVT VANP P  V+G    PVA S   SA GVQ  V  +    +V   G+  PA +V A T    S +   +Q   +  DGAS  D  E  K
Sbjct:  230 MTPIERADASTVWKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQQTVGQGNQSETDAASNVPTAVAVTSSETSTTAVSVSSSSVMLPGVSSSPISVTAVANPPPVVVSGSPALPVAHSTTASAVGVQPSVTPLPTAVSV---GTGAPAAAVDAKTTSLSSIDNLLSQSAANSVDGASMMDTAEFNK 417          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Match: PR40A_ARATH (Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.023e-27
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVS--AAETPTTAIPVSSNTL--QDSSPV 287
            MTP+ERADASTVWKEFTTPEG+KYY+NKVTKESKWTIPE+LKLAREQAQ A+ + + S +G  P +  A + S  A  T T+ +P +S+ L    SSP+
Sbjct:  219 MTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGSTPLSHHAASSSDLAVSTVTSVVPSTSSALTGHSSSPI 317          
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Match: PR35B_ARATH (Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.082e-19
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 3
Query:    3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIP 251
            MT  ERADA T WKE ++P+GRKYY+NK+TK+S WT+PEE+K+ REQA+ A+ QG P   G+   + V T    ++T +TA P
Sbjct:  238 MTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQG-PHAEGIIDASEVLT---RSDTASTAAP 316          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061FF75_THECC4.808e-6774.87Pre-mRNA-processing protein 40A isoform 6 OS=Theob... [more]
A0A061FMH1_THECC6.780e-6774.87Pre-mRNA-processing protein 40A isoform 4 OS=Theob... [more]
A0A061FEF2_THECC7.626e-6774.87Pre-mRNA-processing protein 40A isoform 5 OS=Theob... [more]
A0A061FG70_THECC2.126e-6674.87Pre-mRNA-processing protein 40A isoform 1 OS=Theob... [more]
A0A061FFL7_THECC2.331e-6674.87Pre-mRNA-processing protein 40A isoform 3 OS=Theob... [more]
W9SF57_9ROSA2.680e-4052.00Pre-mRNA-processing factor 40-A-like protein OS=Mo... [more]
A0A0A0L0K0_CUCSA6.052e-3447.26Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
M5XQP2_PRUPE3.712e-3350.73Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
F6H177_VITVI1.826e-2975.64Putative uncharacterized protein OS=Vitis vinifera... [more]
B9IBN8_POPTR9.212e-2951.31FF domain-containing family protein OS=Populus tri... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PR40A_ARATH4.023e-2760.61Pre-mRNA-processing protein 40A OS=Arabidopsis tha... [more]
PR35B_ARATH8.082e-1951.81Pre-mRNA-processing protein 40B OS=Arabidopsis tha... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 8..40
e-value: 3.0E-7
score: 40.1
IPR001202WW domainPFAMPF00397WWcoord: 13..38
e-value: 1.7E-8
score: 34.1
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 7..40
score: 12.393
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 12..46
NoneNo IPR availableGENE3D2.20.70.10coord: 13..42
e-value: 1.2E-15
score: 56.1
NoneNo IPR availablePANTHERPTHR11864:SF21SUBFAMILY NOT NAMEDcoord: 1..50
NoneNo IPR availablePANTHERPTHR11864:SF21SUBFAMILY NOT NAMEDcoord: 129..187
NoneNo IPR availablePANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 1..50
NoneNo IPR availablePANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 129..187

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0012136 ID=g.arboreum_cottongen_reftransV1_0012136; Name=g.arboreum_cottongen_reftransV1_0012136; organism=Gossypium arboreum; type=contig; length=578bp
TGATGACACCAATAGAGAGAGCTGATGCATCCACTGTTTGGAAGGAATTT
ACAACTCCAGAGGGGAGAAAGTATTACCACAACAAGGTTACAAAGGAGTC
TAAGTGGACAATACCTGAGGAGTTGAAGTTAGCTCGTGAGCAAGCTCAAG
CAGCAGCTAGCCAAGGAACCCCATCAGGTTCAGGAGTGGCTCCTCAAGCT
CCAGTTGCTACTGCTGTCTCTGCAGCTGAGACACCTACTACAGCTATTCC
TGTGAGCTCCAACACTTTGCAGGATTCAAGCCCAGTTTCAGTTACGCCTG
TTGCTAATCCTTCACCTACTTCAGTAACTGGACCAACAACAGGTCCTGTT
GCACAATCAGCTGCTATGAGTGCAACTGGGGTTCAACTCCCTGTTGTGTC
TGTGACACCTGTACCTGCAGTCCCCTCCAGAGGTTCCACTGTCCCTGCTC
CTTCTGTTGGTGCTAACACAGCAGTCACAAGAAGCTCAGAAACTACATCA
ACTCAAGACACTATGCATTTTGCAGATGGAGCTTCTGCTCAGGACATTGA
GGAAGCTAAAAAGGGGATGGCAACGGCT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding