g.arboreum_cottongen_reftransV1_0012136, g.arboreum_cottongen_reftransV1_0012136 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FF75_THECC (Pre-mRNA-processing protein 40A isoform 6 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 4.808e-67 Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ ASQG PS +GVA QAPVA AVS+AE P AIPVSSNT Q SSPVSVTP VANPSPT V+G T PV+QSAA +A+ VQ P V+VTP+PAV S GST P SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FMH1_THECC (Pre-mRNA-processing protein 40A isoform 4 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 6.780e-67 Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ ASQG PS +GVA QAPVA AVS+AE P AIPVSSNT Q SSPVSVTP VANPSPT V+G T PV+QSAA +A+ VQ P V+VTP+PAV S GST P SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FEF2_THECC (Pre-mRNA-processing protein 40A isoform 5 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 7.626e-67 Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ ASQG PS +GVA QAPVA AVS+AE P AIPVSSNT Q SSPVSVTP VANPSPT V+G T PV+QSAA +A+ VQ P V+VTP+PAV S GST P SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FG70_THECC (Pre-mRNA-processing protein 40A isoform 1 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.126e-66 Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ ASQG PS +GVA QAPVA AVS+AE P AIPVSSNT Q SSPVSVTP VANPSPT V+G T PV+QSAA +A+ VQ P V+VTP+PAV S GST P SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FFL7_THECC (Pre-mRNA-processing protein 40A isoform 3 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 2.331e-66 Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ ASQG PS +GVA QAPVA AVS+AE P AIPVSSNT Q SSPVSVTP VANPSPT V+G T PV+QSAA +A+ VQ P V+VTP+PAV S GST P SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: W9SF57_9ROSA (Pre-mRNA-processing factor 40-A-like protein OS=Morus notabilis GN=L484_000729 PE=4 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.680e-40 Identity = 104/200 (52.00%), Postives = 130/200 (65.00%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSN-----TLQDSSPVSVTPVANXXXXXXXXXXXXXX--AQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVG-ANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKE+++P+GRKYY+NKVTK+SKWTIPEELKLAREQAQ +SQG S +G+A PV AV ++E P+ PV+S T SSPV+VTPVA+ +S+T + +QSA SA VQ P + GST +P++G ANT R+ + +QD DGAS DIEEAKKGMA A Sbjct: 216 MTPIERADASTVWKEYSSPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKESSQGMQSETGLASHGPV--AVGSSEMPSAGTPVASGAPLVATGVASSPVAVTPVASLPNSSMTISGSSATPGSQSAVASAVAVQ-PPMVTVTPLNPAISGSTGVSPALGNANTTPVRTYDNRVSQDIASSVDGASILDIEEAKKGMAVA 412
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0A0L0K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G644700 PE=4 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 6.052e-34 Identity = 95/201 (47.26%), Postives = 122/201 (60.70%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSG-SGVAPQAPVATAVSAAETP------TTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGV--QLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTP+ERADASTVWKEFT P+GRKYY+NKVTKESKWT+PEELKLAREQAQ A+QGT + S +APQ +A +S AETP ++ P S +SPV VTP + S + T S+A++ T + V +V + G T P V AN + E+ ++QD + DG S +DIEEA+KGMA A Sbjct: 214 MTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTMPEELKLAREQAQKEATQGTQTDISVMAPQPTLAAGLSHAETPAISSVNSSISPTVSGVA--TSPVPVTPFVSVSNSPSVMVTG-----SSAITGTPIASTTSVSGTVSSQSVAASGGTGPPAVVHANASSVTPFESLASQDVKNTVDGTSTEDIEEARKGMAVA 407
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: M5XQP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000697mg PE=4 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 3.712e-33 Identity = 104/205 (50.73%), Postives = 130/205 (63.41%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETP----------TTAIPVSSNTLQDSSPVSVTPV---ANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTP+ERADASTVWKE+T+ +G+KYY+NKVT+ESKWTIPEELKLAREQAQ +QGT S + AP AV++AETP ++A+P SSPV+V PV +NPSP + TG + AQS+ G+Q PVV+VTP PA S + VP V A T + E ++QD DGA QDIEEAK+GMA A Sbjct: 254 MTPMERADASTVWKEYTSSDGKKYYYNKVTRESKWTIPEELKLAREQAQRELAQGTRSEMNLTSHAP--PAVASAETPMGSSSVGPSTSSALPGMV-----SSPVAVIPVSSFSNPSPIAPTGSSVASGAQSSITGGVGIQPPVVTVTPPPASVSGSTGVPPTLVNAITKSVSTFENVTSQDIGSADDGAFTQDIEEAKRGMAVA 451
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: F6H177_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08680 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.826e-29 Identity = 59/78 (75.64%), Postives = 63/78 (80.77%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETP 236 MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQA+ + SQ T S G P AVS AETP Sbjct: 85 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAEKSVSQETQSEMGTTSNEPAVVAVSLAETP 162
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: B9IBN8_POPTR (FF domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s01360g PE=4 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 9.212e-29 Identity = 98/191 (51.31%), Postives = 120/191 (62.83%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQ----DSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKK 563 MTPIERADASTVWKEFTT EG+KYY+NKVTK+SKW+IPEELK+AREQAQ QG S + A P A AV+++ET TTA+ VSS+++ SSP+SVT VANP P V+G PVA S SA GVQ V + +V G+ PA +V A T S + +Q + DGAS D E K Sbjct: 230 MTPIERADASTVWKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQQTVGQGNQSETDAASNVPTAVAVTSSETSTTAVSVSSSSVMLPGVSSSPISVTAVANPPPVVVSGSPALPVAHSTTASAVGVQPSVTPLPTAVSV---GTGAPAAAVDAKTTSLSSIDNLLSQSAANSVDGASMMDTAEFNK 417
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Match: PR40A_ARATH (Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.023e-27 Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVS--AAETPTTAIPVSSNTL--QDSSPV 287 MTP+ERADASTVWKEFTTPEG+KYY+NKVTKESKWTIPE+LKLAREQAQ A+ + + S +G P + A + S A T T+ +P +S+ L SSP+ Sbjct: 219 MTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGSTPLSHHAASSSDLAVSTVTSVVPSTSSALTGHSSSPI 317
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Match: PR35B_ARATH (Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.082e-19 Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIP 251 MT ERADA T WKE ++P+GRKYY+NK+TK+S WT+PEE+K+ REQA+ A+ QG P G+ + V T ++T +TA P Sbjct: 238 MTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQG-PHAEGIIDASEVLT---RSDTASTAAP 316 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012136 ID=g.arboreum_cottongen_reftransV1_0012136; Name=g.arboreum_cottongen_reftransV1_0012136; organism=Gossypium arboreum; type=contig; length=578bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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