HS-46 x MARCABUCAG8US-1-88, F2.3 (1998)

Map Overview


Name	HS-46 x MARCABUCAG8US-1-88, F2:3 (1998)
Species	Gossypium hirsutum
Population type	F2.3
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	HS-46
Paternal parent	MARCABUCAG8US 1-88
Population size	96
Number of loci	120
Number of QTL	100
Number of linkage groups	31
Publication	[view all]
Contact	Ulloa, Mauricio

Stock

Name

Type

Details

HS-46 x MARCABUCAG8US-1-88, F2:3

population

Alias:	3
Description:	genetic mapping
Population size:	96
Secondary id:	cdbpop_000025
Pedigree:	HS-46 / MARCABUCAG8US 1-88

Contact

Name

Details

Ulloa, Mauricio

Description:	Breeding, genetics, and Genomics
First name:	Mauricio
Last name:	Ulloa
Title:	Research Geneticist
Institution:	USDA-ARS, W.I.C.S., Res. Unit
Address:	17053 N. Shafter Ave., Shafter, California 93263
Country:	United States
Email:	mauricio.ulloa@usda.gov
Phone:	661-746-8009
Fax:	746-746-1619
Keywords:	Breeding and Genomics
Last update:	27-Apr-2010

Publication


Year	Publications
1998	Shappley Z, Jenkins J, Meredith W, McCarty JJ. An RFLP linkage map of Upland cotton, Gossypium hirsutum L. Theoretical and applied genetics. 1998 Oct; 97(5/6):756-761.
1998	Quantitative trait loci associated with agronomic and fiber traits of upland cotton.
2002	Ulloa M, Meredith WJ, Shappley Z, Kahler A. RFLP genetic linkage maps from four F2.3 populations and a joinmap of Gossypium hirsutum L. Theoretical and applied genetics. 2002 Feb; 104(2/3):200-208
2005	Ulloa M, Saha S, Jenkins JN, Meredith WR, McCarty JC, Stelly DM. Chromosomal Assignment of RFLP Linkage Groups Harboring Important QTLs on an Intraspecific Cotton (Gossypium hirsutum L.) Joinmap. Journal of heredity. 2005; 96(2):132-144

Map Loci

This map contains 120 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	C114B1	C114B1RI	marker_locus	50.6 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	C101D1	C101D1RV	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	C106D2	C106D2RV	marker_locus	16.7 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg26	C103B1	C103B1RV	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg26	C13B1	C13B1RV	marker_locus	6.9 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg27	C116E4	C116E4RI	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg27	C116E4	C116E4RV	marker_locus	5.6 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	C88C2	C88C2RI	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	C101B1	C101B1RI	marker_locus	1.3 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	C118C3	C118C3RI	marker_locus	4 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	C117B3	C117B3RI	marker_locus	6.7 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg29	C68C4	C68C4RI	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg29	C41E4	C41E4RI	marker_locus	2.2 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg29	C119F6	C119F6RI	marker_locus	3.3 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg30	C61A6	C61A6RV	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg30	C117F1	C117F1RI	marker_locus	7.4 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg30	C115A6	C115A6RI	marker_locus	9.6 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg31	F7C6	F7C6RI	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg31	C118C4	C118C4RVB	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg31	C118C4	C118C4RVA	marker_locus	7.5 cM

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Map QTL

This map contains 100 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qWTFN.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qWALL.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qMIC.HM-F2:3_lg24.2	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qMIC.HM-F2:3_lg24.1	QTL	0 cM	6.8 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qFM.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qFIM.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qFEL.HM-F2:3_lg24	QTL	0 cM	6.8 cM	6.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qAREOAH.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qAREOA.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	qWTFN.HM-F2:3_lg25	QTL	0 cM	16.7 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	qMIC.HM-F2:3_lg25	QTL	0 cM	16.7 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	qLP.HM-F2:3_lg25	QTL	0 cM	16.7 cM	2.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	qFEL.HM-F2:3_lg25	QTL	0 cM	16.7 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg27	qMIC.HM-F2:3_lg27	QTL	0 cM	5.6 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg27	qFS.HM-F2:3_lg27	QTL	0 cM	5.6 cM	4.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg27	qFEL.HM-F2:3_lg27	QTL	0 cM	5.6 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qWALL.HM-F2:3_lg28	QTL	4 cM	6.7 cM	6.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qSL2.5.HM-F2:3_lg28	QTL	0 cM	1.3 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qMIC.HM-F2:3_lg28	QTL	4 cM	6.7 cM	6.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qFM.HM-F2:3_lg28	QTL	4 cM	6.7 cM	4.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qFIM.HM-F2:3_lg28	QTL	4 cM	6.7 cM	4.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qFEL.HM-F2:3_lg28	QTL	0 cM	1.3 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qAREOAH.HM-F2:3_lg28	QTL	4 cM	6.7 cM	4.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg30	qFEL.HM-F2:3_lg30	QTL	0 cM	7.4 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg31	qSTEMNN.HM-F2:3_lg31	QTL	0 cM	7.5 cM	0.5 cM

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HS-46 x MARCABUCAG8US-1-88, F2.3 (1998)