HS-46 x MARCABUCAG8US-1-88, F2.3 (1998)

Map Overview


Name	HS-46 x MARCABUCAG8US-1-88, F2:3 (1998)
Species	Gossypium hirsutum
Population type	F2.3
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	HS-46
Paternal parent	MARCABUCAG8US 1-88
Population size	96
Number of loci	120
Number of QTL	100
Number of linkage groups	31
Publication	[view all]
Contact	Ulloa, Mauricio

Stock

Name

Type

Details

HS-46 x MARCABUCAG8US-1-88, F2:3

population

Alias:	3
Description:	genetic mapping
Population size:	96
Secondary id:	cdbpop_000025
Pedigree:	HS-46 / MARCABUCAG8US 1-88

Contact

Name

Details

Ulloa, Mauricio

Description:	Breeding, genetics, and Genomics
First name:	Mauricio
Last name:	Ulloa
Title:	Research Geneticist
Institution:	USDA-ARS, W.I.C.S., Res. Unit
Address:	17053 N. Shafter Ave., Shafter, California 93263
Country:	United States
Email:	mauricio.ulloa@usda.gov
Phone:	661-746-8009
Fax:	746-746-1619
Keywords:	Breeding and Genomics
Last update:	27-Apr-2010

Publication


Year	Publications
1998	Shappley Z, Jenkins J, Meredith W, McCarty JJ. An RFLP linkage map of Upland cotton, Gossypium hirsutum L. Theoretical and applied genetics. 1998 Oct; 97(5/6):756-761.
1998	Quantitative trait loci associated with agronomic and fiber traits of upland cotton.
2002	Ulloa M, Meredith WJ, Shappley Z, Kahler A. RFLP genetic linkage maps from four F2.3 populations and a joinmap of Gossypium hirsutum L. Theoretical and applied genetics. 2002 Feb; 104(2/3):200-208
2005	Ulloa M, Saha S, Jenkins JN, Meredith WR, McCarty JC, Stelly DM. Chromosomal Assignment of RFLP Linkage Groups Harboring Important QTLs on an Intraspecific Cotton (Gossypium hirsutum L.) Joinmap. Journal of heredity. 2005; 96(2):132-144

Map Loci

This map contains 120 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg17	F2C11	F2C11RV	marker_locus	61.6 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg17	C86B3	C86B3RI	marker_locus	66 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg18	C18A4	C18A4RI	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg18	C18A4	C18A4RV	marker_locus	3 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg19	C56A6	C56A6RIA	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg19	C111C3	C111C3RV	marker_locus	22.3 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg19	C27B6	C27B6RI	marker_locus	27.3 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg19	F2A4	F2A4RV	marker_locus	27.8 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg19	F9D3	F9D3RV	marker_locus	29.4 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg19	C80F1	C80F1RV	marker_locus	47.6 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg19	C71E2	C71E2RI	marker_locus	73.9 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg20	C28C1	C28C1RV	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg20	F3F7	F3F7RI	marker_locus	8.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg21	C33A6	C33A6RV	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg21	C33A6	C33A6RI	marker_locus	1 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg21	F6D4	F6D4RV	marker_locus	1.9 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg22	C85B5	C85B5RV	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg22	C43F5	C43F5RI	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg22	C83E2	C83E2RI	marker_locus	2.1 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg22	C105A2	C105A2RI	marker_locus	3.7 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg23	C44D2	C44D2RI	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg23	C87E4	C87E4RI	marker_locus	8.9 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	C113C4	C113C4RI	marker_locus	0 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	C113F5	C113F5RI	marker_locus	6.8 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	C79F2	C79F2RIA	marker_locus	38.9 cM

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Map QTL

This map contains 100 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qWTFN.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qWALL.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qMIC.HM-F2:3_lg24.2	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qMIC.HM-F2:3_lg24.1	QTL	0 cM	6.8 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qFM.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qFIM.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qFEL.HM-F2:3_lg24	QTL	0 cM	6.8 cM	6.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qAREOAH.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg24	qAREOA.HM-F2:3_lg24	QTL	38.9 cM	50.6 cM	50.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	qWTFN.HM-F2:3_lg25	QTL	0 cM	16.7 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	qMIC.HM-F2:3_lg25	QTL	0 cM	16.7 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	qLP.HM-F2:3_lg25	QTL	0 cM	16.7 cM	2.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg25	qFEL.HM-F2:3_lg25	QTL	0 cM	16.7 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg27	qMIC.HM-F2:3_lg27	QTL	0 cM	5.6 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg27	qFS.HM-F2:3_lg27	QTL	0 cM	5.6 cM	4.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg27	qFEL.HM-F2:3_lg27	QTL	0 cM	5.6 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qWALL.HM-F2:3_lg28	QTL	4 cM	6.7 cM	6.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qSL2.5.HM-F2:3_lg28	QTL	0 cM	1.3 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qMIC.HM-F2:3_lg28	QTL	4 cM	6.7 cM	6.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qFM.HM-F2:3_lg28	QTL	4 cM	6.7 cM	4.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qFIM.HM-F2:3_lg28	QTL	4 cM	6.7 cM	4.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qFEL.HM-F2:3_lg28	QTL	0 cM	1.3 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg28	qAREOAH.HM-F2:3_lg28	QTL	4 cM	6.7 cM	4.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg30	qFEL.HM-F2:3_lg30	QTL	0 cM	7.4 cM	0.5 cM
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998).lg31	qSTEMNN.HM-F2:3_lg31	QTL	0 cM	7.5 cM	0.5 cM

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HS-46 x MARCABUCAG8US-1-88, F2.3 (1998)