MD-5678ne x Prema, F2.3 (2000)

Map Overview


Name	MD-5678ne x Prema, F2:3 (2000)
Species	Gossypium hirsutum
Population type	F2.3
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Acala Prema
Paternal parent	MD5678 ne
Population size	119
Number of loci	81
Number of QTL	26
Number of linkage groups	17
Publication	[view all]
Contact	Ulloa, Mauricio

Stock

Name

Type

Details

MD-5678ne x Prema, F2:3

population

Alias:	3
Description:	genetic mapping
Population size:	119
Secondary id:	cdbpop_000028
Origin detail:	Mississippi, USA
Pedigree:	MD5678 ne / Acala Prema

Contact

Name

Details

Ulloa, Mauricio

Description:	Breeding, genetics, and Genomics
First name:	Mauricio
Last name:	Ulloa
Title:	Research Geneticist
Institution:	USDA-ARS, W.I.C.S., Res. Unit
Address:	17053 N. Shafter Ave., Shafter, California 93263
Country:	United States
Email:	mauricio.ulloa@usda.gov
Phone:	661-746-8009
Fax:	746-746-1619
Keywords:	Breeding and Genomics
Last update:	27-Apr-2010

Publication


Year	Publications
2000	Genetic linkage map and QTL analysis of agronomic and fiber quality traits in an intraspecific population.
2002	Ulloa M, Meredith WJ, Shappley Z, Kahler A. RFLP genetic linkage maps from four F2.3 populations and a joinmap of Gossypium hirsutum L. Theoretical and applied genetics. 2002 Feb; 104(2/3):200-208
2005	Ulloa M, Saha S, Jenkins JN, Meredith WR, McCarty JC, Stelly DM. Chromosomal Assignment of RFLP Linkage Groups Harboring Important QTLs on an Intraspecific Cotton (Gossypium hirsutum L.) Joinmap. Journal of heredity. 2005; 96(2):132-144

Map Loci

This map contains 81 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MD-5678ne x Prema, F2:3 (2000).group07	A42E4	A42E4b	marker_locus	0 cM
MD-5678ne x Prema, F2:3 (2000).group07	A53E2	A53E2b	marker_locus	10.4 cM
MD-5678ne x Prema, F2:3 (2000).group07	A20E2	A20E2a	marker_locus	25.4 cM
MD-5678ne x Prema, F2:3 (2000).group07	A20E2	A20E2b	marker_locus	31.8 cM
MD-5678ne x Prema, F2:3 (2000).group07	A70D2	A70D2a	marker_locus	40.3 cM
MD-5678ne x Prema, F2:3 (2000).group07	A34B1	A34B1	marker_locus	58.1 cM
MD-5678ne x Prema, F2:3 (2000).group08	A28C1	A28C1a	marker_locus	0 cM
MD-5678ne x Prema, F2:3 (2000).group08	A28C1	A28C1b	marker_locus	1 cM
MD-5678ne x Prema, F2:3 (2000).group09	A58D3	A58D3c	marker_locus	0 cM
MD-5678ne x Prema, F2:3 (2000).group09	A44D2	A44D2	marker_locus	19 cM
MD-5678ne x Prema, F2:3 (2000).group10	A85D6	A85D6a	marker_locus	0 cM
MD-5678ne x Prema, F2:3 (2000).group10	A89B5	A89B5a	marker_locus	17.7 cM
MD-5678ne x Prema, F2:3 (2000).group10	A51D5	A51D5	marker_locus	34 cM
MD-5678ne x Prema, F2:3 (2000).group10	A86A5	A86A5a	marker_locus	35.8 cM
MD-5678ne x Prema, F2:3 (2000).group10	A86A5	A86A5b	marker_locus	39.6 cM
MD-5678ne x Prema, F2:3 (2000).group10	A86A5	A86A5c	marker_locus	42.9 cM
MD-5678ne x Prema, F2:3 (2000).group10	A89E1	A89E1	marker_locus	67.7 cM
MD-5678ne x Prema, F2:3 (2000).group11	A52C6	A52C6	marker_locus	0 cM
MD-5678ne x Prema, F2:3 (2000).group11	A56E2	A56E2	marker_locus	10.1 cM
MD-5678ne x Prema, F2:3 (2000).group12	A52E2	A52E2	marker_locus	0 cM
MD-5678ne x Prema, F2:3 (2000).group12	A79E1	A79E1a	marker_locus	23.1 cM
MD-5678ne x Prema, F2:3 (2000).group13	A62A6	A62A6b	marker_locus	0 cM
MD-5678ne x Prema, F2:3 (2000).group13	A53B6	A53B6a	marker_locus	2.4 cM
MD-5678ne x Prema, F2:3 (2000).group14	A85E1	A85E1a	marker_locus	0 cM
MD-5678ne x Prema, F2:3 (2000).group14	A86F4	A86F4a	marker_locus	9.3 cM

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Map QTL

This map contains 26 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MD-5678ne x Prema, F2:3 (2000).group09	qFEL.MP-F2:3_group09	QTL	4 cM	7 cM	-

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MD-5678ne x Prema, F2.3 (2000)